Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Reverse (-)

5432077 .. 5436299

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTACAAGTACGAGACCCTCCTCTTCTCTGATGCTGACGTACGCCTCCTCCTCCTCCGTATTCCCACAAGACCTGACTCCCTCACTCGTCTCCTTCAAGCCCAAAAAGCCTCTCTGCCCACTTGTTTTGAGGCCTAGACAGAGAAGGGTCAGTCTCAGTTTCTTAAAGGAACCCAAAAAGTCAGAGCCTTTCCATGTCGTCGCGGCTGCTGTGACTACCGAGGCAGAGGTGGACGAGGCTGTGGAAGAAGAAGCAGCACTCAAAGAAGGTGATGGGTCTGCTCCTCCTGTTCCTGTTTCAAAGCCCAAGAAAGGGAAAGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAAAAGTTGAGGGAAACTAAAAAAGAGTATGAGGTGAAGCCAGCTATAGCTTTACTGAATGAAATGGCGAGTGCAAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAATACAATGACCAACAGCTAAGGGCAACTGTTAATCTGCCCAAGGGAACTGGACAAACTGTTAAGGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGAGGAGGCCAAAAACGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAGCAGATAAAAGAAGGATTCATGGAATTTGACAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGCCTTGGAAAGATTCTAGGACCAAGAGGGCTCATGCCAAATCCAAAAGCTGGTACTGTGACTCCTAATATACCCCAGGTATGTTTTGGTTTTCCCTATTTTCTTTTTCTTTCTGCGCTTGCGATTTTCTTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

284

Amino Acids

31.12

Weight (kDa)

9.42

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	144 - 264	1.2e-38	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	206, 481
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	3 cut(s)	372, 452, 671
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	3 cut(s)	13, 44, 772
AfiI	CCNNNNNNNGG	3 cut(s)	314, 315, 767
AgsI	TTSAA	4 cut(s)	100, 303, 337, 377
AjnI	CCWGG	1 cut(s)	792
AluBI	AGCT	5 cut(s)	323, 419, 425, 517, 767
AluI	AGCT	5 cut(s)	323, 419, 425, 517, 767
Alw26I	GTCTC	4 cut(s)	10, 97, 161, 336
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	2 cut(s)	134, 600
ApeKI	GCWGC	3 cut(s)	209, 257, 323
ApoI	RAATTY	3 cut(s)	372, 452, 671
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	354, 737
AsuHPI	GGTGA	4 cut(s)	284, 421, 596, 684
AsuNHI	GCTAGC	1 cut(s)	716
AvaII	GGWCC	2 cut(s)	354, 737
BanII	GRGCYC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	196, 269, 310
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	794
BcoDI	GTCTC	4 cut(s)	10, 97, 161, 336
BfaI	CTAG	3 cut(s)	138, 717, 734
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	4 cut(s)	207, 210, 258, 324
BlsI	GCNGC	4 cut(s)	208, 211, 259, 325
Bme1390I	CCNGG	1 cut(s)	794
Bme18I	GGWCC	2 cut(s)	354, 737
BmgT120I	GGNCC	2 cut(s)	354, 737
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	794
BmsI	GCATC	2 cut(s)	24, 693
BmtI	GCTAGC	1 cut(s)	720
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	5 cut(s)	222, 540, 708, 721, 792
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 763, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 315, 767
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	5 cut(s)	222, 540, 708, 721, 792
BseLI	CCNNNNNNNGG	3 cut(s)	314, 315, 767
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	6 cut(s)	13, 40, 43, 46, 276, 611
BseXI	GCAGC	3 cut(s)	196, 269, 310
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	136, 602
BsiWI	CGTACG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	314, 315, 767
BsmAI	GTCTC	4 cut(s)	10, 97, 161, 336
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	136, 602
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	2 cut(s)	206, 481
BspANI	GGCC	2 cut(s)	136, 602
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	174
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	5 cut(s)	222, 540, 708, 721, 792
BssMI	GATC	1 cut(s)	493
BssT1I	CCWWGG	3 cut(s)	540, 708, 721
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	3 cut(s)	529, 559, 775
Bst6I	CTCTTC	2 cut(s)	31, 332
BstC8I	GCNNGC	3 cut(s)	417, 718, 837
BstDEI	CTNAG	2 cut(s)	158, 518
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	4 cut(s)	10, 97, 161, 336
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 608
BstNI	CCWGG	1 cut(s)	794
BstSCI	CCNGG	1 cut(s)	792
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	196, 269, 310
BsuRI	GGCC	2 cut(s)	136, 602
Cac8I	GCNNGC	3 cut(s)	417, 718, 837
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	2 cut(s)	354, 737
Csp6I	GTAC	3 cut(s)	12, 43, 771
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	3 cut(s)	197, 667, 751
CviQI	GTAC	3 cut(s)	12, 43, 771
DdeI	CTNAG	2 cut(s)	158, 518
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	31, 332
EarI	CTCTTC	2 cut(s)	31, 332
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	3 cut(s)	540, 708, 721
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	354, 737
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	792
EcoT14I	CCWWGG	3 cut(s)	540, 708, 721
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	3 cut(s)	540, 708, 721
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	200, 670, 754
FaiI	YATR	8 cut(s)	198, 405, 422, 668, 701, 752, 788, 799
FatI	CATG	3 cut(s)	196, 666, 750
Fnu4HI	GCNGC	4 cut(s)	207, 210, 258, 324
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	4 cut(s)	207, 210, 258, 324
FspBI	CTAG	3 cut(s)	138, 717, 734
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	4 cut(s)	207, 210, 258, 324
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	136, 602
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	3 cut(s)	200, 670, 754
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HinfI	GANTC	5 cut(s)	79, 363, 663, 730, 778
HphI	GGTGA	4 cut(s)	284, 421, 596, 684
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	33, 187
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	4 cut(s)	106, 141, 263, 653
HpyCH4III	ACNGT	3 cut(s)	529, 559, 775
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	326, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 608
HpyF3I	CTNAG	2 cut(s)	158, 518
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	200, 670, 754
HspAI	GCGC	1 cut(s)	833
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	2 cut(s)	289, 614
Lsp1109I	GCAGC	3 cut(s)	196, 269, 310
LweI	GCATC	2 cut(s)	24, 693
MaeI	CTAG	3 cut(s)	138, 717, 734
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	214, 775
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	4 cut(s)	18, 260, 263, 349
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	4 cut(s)	372, 452, 671, 684
MlyI	GAGTC	2 cut(s)	73, 772
MseI	TTAA	4 cut(s)	167, 531, 561, 683
MspR9I	CCNGG	1 cut(s)	794
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	109, 608
NdeII	GATC	1 cut(s)	493
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	3 cut(s)	200, 670, 754
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	214, 775
PceI	AGGCCT	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	363, 663, 730
Pfl23II	CGTACG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	208, 211, 259, 325
PleI	GAGTC	2 cut(s)	73, 772
PpsI	GAGTC	2 cut(s)	73, 772
Psp6I	CCWGG	1 cut(s)	792
PspGI	CCWGG	1 cut(s)	792
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	354, 737
RsaI	GTAC	3 cut(s)	13, 44, 772
RsaNI	GTAC	3 cut(s)	12, 43, 771
SaqAI	TTAA	4 cut(s)	167, 531, 561, 683
SatI	GCNGC	4 cut(s)	207, 210, 258, 324
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	2 cut(s)	354, 737
SchI	GAGTC	2 cut(s)	73, 772
ScrFI	CCNGG	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	24, 693
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	354, 737
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	4 cut(s)	372, 452, 671, 684
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	206, 481
SspMI	CTAG	3 cut(s)	138, 717, 734
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	792
StyI	CCWWGG	3 cut(s)	540, 708, 721
TaaI	ACNGT	3 cut(s)	529, 559, 775
TaiI	ACGT	1 cut(s)	44
TasI	AATT	4 cut(s)	372, 452, 671, 684
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	363, 663, 730
Tru1I	TTAA	4 cut(s)	167, 531, 561, 683
Tru9I	TTAA	4 cut(s)	167, 531, 561, 683
TseFI	GTSAC	2 cut(s)	214, 775
TseI	GCWGC	3 cut(s)	209, 257, 323
Tsp45I	GTSAC	2 cut(s)	214, 775
TspDTI	ATGAA	2 cut(s)	450, 655
TspGWI	ACGGA	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	354, 737
XapI	RAATTY	3 cut(s)	372, 452, 671
XcmI	CCANNNNNNNNNTGG	2 cut(s)	364, 800
XspI	CTAG	3 cut(s)	138, 717, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.