AT4G00050

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17639 .. 20183
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00050.2

Sequence Viewer

Length: 1200 bp
ATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACTCCGGCAGCAGCCACCACCACCGTCCGCTCCACCACAGCCGCAGACATCCCCATATTAGACTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTAGGCTTGCACGGCTTAGGTCCACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTCGATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTGGTTCCATCATCGCTCCTCCAGGGCCGCGATGGCAATGGACGCGCTTGTCCCTTGCTCCAACCTAGTACACGAGCAGCAGAGCAAGCCTGGTGGCGTTGGCTCCACCCGGGTGGGGTCATGTAGCGATGGTCGTACCATGGGCGGTGGAAAACGAGCAAGAGTGGCACCGGAGTGGAGCGGCGGCGGGAGTCAGCGGCTGACCATGGACACTTACGACGTAGGTTTCACCTCAACATCAATGGGCTCGCACGATAACACAATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGATGGAGGACGAAGAAGAGAAGAAAGCCGGAGGAAAATCATCAGTTTCAACCAAGAGAAGCAGAGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAAATCAATCAAAGGATGAAGACTTTGCAAAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGATGAAGTGATAGAGTATTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAATATGCCTTCTATGATGCTTCCTATGGCCATGCAGCAACAACAACAACTACAAATGTCTCTCATGTCCAATCCCATGGGTTTAGGGATGGGCATGGGGATGCCCGGTCTCGGTCTCCTCGACCTTAATTCTATGAACCGAGCTGCTGCAAGCGCTCCTAATATCCATGCCAACATGATGCCAAACCCATTTTTGCCCATGAATTGTCCATCGTGGGATGCTTCTTCCAATGACTCTCGATTTCAGTCTCCTCTCATCCCCGATCCTATGTCTGCCTTTCTTGCATGCTCTACTCAGCCAACGACGATGGAAGCGTATAGCAGGATGGCTACATTATATCAGCAAATGCAACAACAACTTCCTCCTCCTTCGAATCCAAAATGA

Protein Analysis

399

Amino Acids

43.36

Weight (kDa)

7.14

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 116 - 161 1.9e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 119 - 164 1.4e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011387)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 175, 323
AccB1I GGYRCC 2 cut(s) 197, 442
AccBSI CCGCTC 2 cut(s) 66, 456
AccI GTMKAC 1 cut(s) 179
AccII CGCG 3 cut(s) 163, 305, 320
AclI AACGTT 1 cut(s) 209
AclWI GGATC 1 cut(s) 1073
AcoI YGGCCR 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 3 cut(s) 188, 345, 412
AfeI AGCGCT 1 cut(s) 970
AfiI CCNNNNNNNGG 3 cut(s) 390, 577, 926
AgsI TTSAA 3 cut(s) 624, 778, 788
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 296, 364
AleI CACNNNNGTG 2 cut(s) 386, 448
AluBI AGCT 5 cut(s) 115, 233, 268, 641, 959
AluI AGCT 5 cut(s) 115, 233, 268, 641, 959
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 4 cut(s) 879, 929, 935, 1068
AlwI GGATC 1 cut(s) 1073
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 384
Aor51HI AGCGCT 1 cut(s) 970
AoxI GGCC 2 cut(s) 300, 843
ApeKI GCWGC 8 cut(s) 44, 47, 352, 641, 644, 850, 959, 962
AspLEI GCGC 3 cut(s) 200, 322, 971
AspS9I GGNCC 3 cut(s) 155, 226, 300
AsuC2I CCSGG 3 cut(s) 385, 386, 921
AsuHPI GGTGA 1 cut(s) 496
AsuII TTCGAA 1 cut(s) 1187
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 2 cut(s) 155, 226
BalI TGGCCA 1 cut(s) 845
BanI GGYRCC 2 cut(s) 197, 442
BanII GRGCYC 2 cut(s) 270, 524
BauI CACGAG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 8 cut(s) 56, 59, 364, 628, 631, 862, 946, 949
BccI CCATC 8 cut(s) 291, 301, 398, 571, 898, 1033, 1117, 1135
BceAI ACGGC 2 cut(s) 163, 186
BciT130I CCWGG 2 cut(s) 298, 366
BcnI CCSGG 3 cut(s) 385, 386, 921
BcoDI GTCTC 4 cut(s) 879, 929, 935, 1068
BfaI CTAG 2 cut(s) 137, 341
BfoI RGCGCY 2 cut(s) 201, 972
BglI GCCNNNNNGGC 1 cut(s) 308
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 5 cut(s) 298, 366, 385, 386, 921
Bme18I GGWCC 2 cut(s) 155, 226
BmeT110I CYCGRG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 155, 226, 300
BmiI GGNNCC 5 cut(s) 199, 281, 379, 444, 720
BmrFI CCNGG 5 cut(s) 298, 366, 385, 386, 921
BmsI GCATC 5 cut(s) 755, 822, 906, 984, 1024
BpiI GAAGAC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 280
Bpu10I CCTNAGC 2 cut(s) 151, 252
Bpu14I TTCGAA 1 cut(s) 1187
BpuMI CCSGG 3 cut(s) 385, 386, 921
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 929, 935
BsaJI CCNNGG 7 cut(s) 258, 275, 297, 384, 414, 480, 891
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 577, 926
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 720
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 298, 366
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 7 cut(s) 258, 275, 297, 384, 414, 480, 891
BseGI GGATG 9 cut(s) 84, 268, 702, 763, 909, 921, 1039, 1071, 1146
BseLI CCNNNNNNNGG 3 cut(s) 390, 577, 926
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 1124
BseNI ACTGG 1 cut(s) 720
BseRI GAGGAG 5 cut(s) 283, 688, 923, 1056, 1170
BseXI GCAGC 8 cut(s) 56, 59, 364, 628, 631, 862, 946, 949
Bsh1236I CGCG 3 cut(s) 163, 305, 320
BshFI GGCC 2 cut(s) 302, 845
BshNI GGYRCC 2 cut(s) 197, 442
BshVI ATCGAT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 6 cut(s) 41, 201, 385, 446, 603, 921
BslFI GGGAC 2 cut(s) 257, 311
BslI CCNNNNNNNGG 3 cut(s) 390, 577, 926
BsmAI GTCTC 4 cut(s) 879, 929, 935, 1068
BsmFI GGGAC 2 cut(s) 257, 311
BsnI GGCC 2 cut(s) 302, 845
Bso31I GGTCTC 2 cut(s) 929, 935
BsoBI CYCGRG 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 1187
Bsp1286I GDGCHC 2 cut(s) 270, 524
Bsp143I GATC 2 cut(s) 544, 1078
Bsp19I CCATGG 3 cut(s) 414, 480, 891
BspANI GGCC 2 cut(s) 302, 845
BspCNI CTCAG 1 cut(s) 1123
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 3 cut(s) 163, 305, 320
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 199, 281, 379, 444, 720
BspPI GGATC 1 cut(s) 1073
BspT104I TTCGAA 1 cut(s) 1187
BspT107I GGYRCC 2 cut(s) 197, 442
BspTNI GGTCTC 2 cut(s) 929, 935
BsrBI CCGCTC 2 cut(s) 66, 456
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 720
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 258, 275, 297, 384, 414, 480, 891
BssMI GATC 2 cut(s) 544, 1078
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 3 cut(s) 414, 480, 891
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 298, 366
Bst4CI ACNGT 2 cut(s) 23, 61
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 1187
BstC8I GCNNGC 5 cut(s) 143, 362, 524, 967, 1102
BstDEI CTNAG 3 cut(s) 151, 252, 1110
BstDSI CCRYGG 5 cut(s) 258, 275, 414, 480, 891
BstF5I GGATG 9 cut(s) 84, 268, 702, 763, 909, 921, 1039, 1071, 1146
BstFNI CGCG 3 cut(s) 163, 305, 320
BstH2I RGCGCY 2 cut(s) 201, 972
BstHHI GCGC 3 cut(s) 200, 322, 971
BstKTI GATC 2 cut(s) 547, 1081
BstMAI GTCTC 4 cut(s) 879, 929, 935, 1068
BstMBI GATC 2 cut(s) 544, 1078
BstMWI GCNNNNNNNGC 9 cut(s) 147, 308, 317, 361, 440, 567, 807, 968, 1097
BstNI CCWGG 2 cut(s) 298, 366
BstNSI RCATGY 1 cut(s) 1104
BstSCI CCNGG 5 cut(s) 296, 364, 383, 384, 919
BstUI CGCG 3 cut(s) 163, 305, 320
BstV1I GCAGC 8 cut(s) 56, 59, 364, 628, 631, 862, 946, 949
BstV2I GAAGAC 1 cut(s) 707
BstXI CCANNNNNNTGG 2 cut(s) 388, 892
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 2 cut(s) 302, 845
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 5 cut(s) 258, 275, 414, 480, 891
BtgZI GCGATG 3 cut(s) 272, 320, 417
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 9 cut(s) 84, 268, 702, 763, 909, 921, 1039, 1071, 1146
Cac8I GCNNGC 5 cut(s) 143, 362, 524, 967, 1102
CaiI CAGNNNCTG 1 cut(s) 475
CciI TCATGA 1 cut(s) 547
CfoI GCGC 3 cut(s) 200, 322, 971
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 155, 226, 300
Cfr9I CCCGGG 1 cut(s) 384
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 1 cut(s) 326
Csp6I GTAC 3 cut(s) 187, 344, 411
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviQI GTAC 3 cut(s) 187, 344, 411
DdeI CTNAG 3 cut(s) 151, 252, 1110
DinI GGCGCC 1 cut(s) 199
DpnI GATC 2 cut(s) 546, 1080
DpnII GATC 2 cut(s) 544, 1078
DrdI GACNNNNNNGTC 2 cut(s) 175, 323
DseDI GACNNNNNNGTC 2 cut(s) 175, 323
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 3 cut(s) 414, 480, 891
Eco24I GRGCYC 2 cut(s) 270, 524
Eco31I GGTCTC 2 cut(s) 929, 935
Eco47I GGWCC 2 cut(s) 155, 226
Eco47III AGCGCT 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 296, 364
EcoT14I CCWWGG 3 cut(s) 414, 480, 891
EcoT38I GRGCYC 2 cut(s) 270, 524
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 3 cut(s) 414, 480, 891
FaqI GGGAC 2 cut(s) 257, 311
FauI CCCGC 1 cut(s) 455
FblI GTMKAC 1 cut(s) 179
FokI GGATG 9 cut(s) 71, 275, 709, 770, 916, 928, 1046, 1058, 1153
FriOI GRGCYC 2 cut(s) 270, 524
FspBI CTAG 2 cut(s) 137, 341
GlaI GCGC 3 cut(s) 199, 321, 970
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 2 cut(s) 201, 972
HaeIII GGCC 2 cut(s) 302, 845
HapII CCGG 6 cut(s) 41, 201, 385, 446, 603, 921
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 200, 322, 971
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 3 cut(s) 198, 320, 969
HinP1I GCGC 3 cut(s) 198, 320, 969
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 5 cut(s) 215, 466, 551, 1049, 1189
HpaII CCGG 6 cut(s) 41, 201, 385, 446, 603, 921
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 4 cut(s) 158, 180, 226, 346
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 2 cut(s) 548, 1053
Hpy8I GTNNAC 4 cut(s) 158, 180, 226, 346
Hpy99I CGWCG 4 cut(s) 181, 497, 545, 1123
HpyAV CCTTC 2 cut(s) 834, 1194
HpyCH4III ACNGT 2 cut(s) 23, 61
HpyCH4IV ACGT 4 cut(s) 119, 209, 495, 667
HpyCH4V TGCA 6 cut(s) 145, 709, 850, 965, 1100, 1165
HpyF10VI GCNNNNNNNGC 9 cut(s) 147, 308, 317, 361, 440, 567, 807, 968, 1097
HpyF3I CTNAG 3 cut(s) 151, 252, 1110
HpySE526I ACGT 4 cut(s) 119, 209, 495, 667
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 3 cut(s) 198, 320, 969
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 544, 1078
LmnI GCTCC 6 cut(s) 71, 296, 338, 383, 453, 976
Lsp1109I GCAGC 8 cut(s) 56, 59, 364, 628, 631, 862, 946, 949
LweI GCATC 5 cut(s) 755, 822, 906, 984, 1024
MaeI CTAG 2 cut(s) 137, 341
MaeII ACGT 4 cut(s) 119, 209, 495, 667
MaeIII GTNAC 2 cut(s) 23, 166
MalI GATC 2 cut(s) 546, 1080
MbiI CCGCTC 2 cut(s) 66, 456
MboI GATC 2 cut(s) 544, 1078
MboII GAAGA 5 cut(s) 599, 602, 607, 712, 1032
MhlI GDGCHC 2 cut(s) 270, 524
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 3 cut(s) 724, 943, 1018
MluNI TGGCCA 1 cut(s) 845
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 4 cut(s) 224, 475, 545, 1043
MmeI TCCRAC 3 cut(s) 192, 360, 735
Mox20I TGGCCA 1 cut(s) 845
MscI TGGCCA 1 cut(s) 845
MseI TTAA 1 cut(s) 942
MslI CAYNNNNRTG 4 cut(s) 30, 386, 448, 914
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 6 cut(s) 41, 201, 385, 446, 603, 921
MspR9I CCNGG 5 cut(s) 298, 366, 385, 386, 921
MvaI CCWGG 2 cut(s) 298, 366
MvnI CGCG 3 cut(s) 163, 305, 320
MwoI GCNNNNNNNGC 9 cut(s) 147, 308, 317, 361, 440, 567, 807, 968, 1097
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 3 cut(s) 385, 386, 921
NcoI CCATGG 3 cut(s) 414, 480, 891
NdeII GATC 2 cut(s) 544, 1078
NlaIV GGNNCC 5 cut(s) 199, 281, 379, 444, 720
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 23, 166
NspI RCATGY 1 cut(s) 1104
NspV TTCGAA 1 cut(s) 1187
OliI CACNNNNGTG 2 cut(s) 386, 448
PaeI GCATGC 1 cut(s) 1104
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 5 cut(s) 108, 176, 215, 933, 1127
PfeI GAWTC 1 cut(s) 1189
PflFI GACNNNGTC 1 cut(s) 554
PleI GAGTC 4 cut(s) 223, 474, 545, 1043
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 4 cut(s) 223, 474, 545, 1043
Psp124BI GAGCTC 1 cut(s) 270
Psp1406I AACGTT 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 296, 364
PspGI CCWGG 2 cut(s) 296, 364
PspN4I GGNNCC 5 cut(s) 199, 281, 379, 444, 720
PspPI GGNCC 3 cut(s) 155, 226, 300
PstNI CAGNNNCTG 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 3 cut(s) 188, 345, 412
RsaNI GTAC 3 cut(s) 187, 344, 411
RseI CAYNNNNRTG 4 cut(s) 30, 386, 448, 914
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 942
Sau3AI GATC 2 cut(s) 544, 1078
Sau96I GGNCC 3 cut(s) 155, 226, 300
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 4 cut(s) 224, 475, 545, 1043
ScrFI CCNGG 5 cut(s) 298, 366, 385, 386, 921
SduI GDGCHC 2 cut(s) 270, 524
SfaNI GCATC 5 cut(s) 755, 822, 906, 984, 1024
SfoI GGCGCC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 1187
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 2 cut(s) 155, 226
SmaI CCCGGG 1 cut(s) 386
SmiMI CAYNNNNRTG 4 cut(s) 30, 386, 448, 914
SphI GCATGC 1 cut(s) 1104
Sse9I AATT 3 cut(s) 724, 943, 1018
SspDI GGCGCC 1 cut(s) 197
SspMI CTAG 2 cut(s) 137, 341
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 5 cut(s) 296, 364, 383, 384, 919
StyI CCWWGG 3 cut(s) 414, 480, 891
TaaI ACNGT 2 cut(s) 23, 61
TaiI ACGT 4 cut(s) 122, 212, 498, 670
TaqI TCGA 7 cut(s) 30, 179, 218, 540, 936, 1054, 1187
TaqII GACCGA 1 cut(s) 917
TasI AATT 3 cut(s) 724, 943, 1018
TatI WGTACW 2 cut(s) 186, 343
TauI GCSGC 6 cut(s) 80, 305, 459, 462, 475, 570
TfiI GAWTC 1 cut(s) 1189
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TseFI GTSAC 2 cut(s) 23, 166
TseI GCWGC 8 cut(s) 44, 47, 352, 641, 644, 850, 959, 962
Tsp45I GTSAC 2 cut(s) 23, 166
TspDTI ATGAA 6 cut(s) 641, 713, 774, 830, 965, 1031
TspGWI ACGGA 3 cut(s) 275, 544, 752
TspMI CCCGGG 1 cut(s) 384
Tth111I GACNNNGTC 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 155, 226
XceI RCATGY 1 cut(s) 1104
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmaI CCCGGG 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 2 cut(s) 137, 341
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.