Rmu_sc0002970.1_g000013

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002970.1
OG0011387
Physical Location & Seq
Reverse (-)
33519 .. 36199
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002970.1_g000013.1.cds

Sequence Viewer

Length: 1191 bp
atgagccagtgtgttcccagctgggatctggatgacagtagtccaccgccgaggctggagtccatagtcaaccaagccacctgtactttgcctcggttttccaagcctccctttgataacaccatcacttctgccactggcggtggtgctaacaaagtagttacctggttcgatcatcactgtcgtgttgccacctccggtgctccctccaacaccatgaccatggacgcgttggtcccttgcaggaacaaccaacctgatgaaccaaacagtagccttatgatagactctgtagataccgtgccaggagtgcccggcagttctggcacgggcgtgatcaatgggcgccccactcgagtggggtcgtgcagcgctaccgcgacccacaacgaggacacccgccgactgggaaaacacaaggcgggcgttgcacgtgtacctgctacacccgagtgcagatcccccagcgtgagcggtagtgccacgtttgggatggatagccagcaagccacacttgatactaagggaagcgaccgtgactcagtttgtcacagcagaccacagagagaggaaagcgacgaggaggaaagaaagaagcgaagtactggaaagtcctcagtttctacaaaaaggagtagggctgctgctatacataaccaatctgaacgtaaaaggagagataagatcaaccagaggatgaagacgctgcagaagctggtcccaaattccagtaagactgataaagcttcaatgctggacgaagtgattgaatacttgaaacaattgcaagctcaagtccatgtgataagcagaatgaacatgccggccatgatgttgcctatggctatgcagcaacaacttcaaatgtctatgatggccccaagaaatatgggcatggggattgggatgggaatgggaatgggaatggacatgaacaacatcggccgccccaacatagggggagtccctccagttcttcacccaactgcattcatgcccatggcttcatgggatggctctgcctgcggcgctgagaggttacaagctgcttcaacgactgtgatgcctgatcccttgccagcatttcttgcatgccaatcgcagccgatgaccatggatgcttacagcatgatggcggccatgtatcaacaattccatcagcaaccagcagcatctagttctaagagctaa

Protein Analysis

396

Amino Acids

42.78

Weight (kDa)

8.96

Isoelectric Point (pI)

68.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00050 AT4G00050 AT4G00050
fragaria_vesca FvH4_7g10840
malus_domestica MD07G1113200.v1.1
prunus_persica Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1
pyrus_communis pycom07g09800
rosa_chinensis RchiOBHm_Chr1g0348781
rosa_laevigata RLG00000028624
rosa_multiflora Rmu_co8207186.1_g000001 Rmu_sc0002970.1_g000013
rosa_roxburghii Rroxscaffold_4G00306600
rosa_rugosa Rorug01G0197900
rosa_samantha Rh1AG215200 Rh1BG181500 Rh1CG199600 Rh1DG211400
rosa_wichuraiana Rw1G018230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 474
AccII CGCG 2 cut(s) 230, 380
AciI CCGC 9 cut(s) 47, 141, 378, 400, 422, 474, 946, 1026, 1136
AclWI GGATC 3 cut(s) 33, 453, 1064
AcoI YGGCCR 3 cut(s) 825, 943, 1137
AcsI RAATTY 1 cut(s) 724
AcvI CACGTG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 3 cut(s) 85, 438, 604
AfeI AGCGCT 1 cut(s) 373
AfiI CCNNNNNNNGG 5 cut(s) 391, 406, 489, 956, 957
AflIII ACRYGT 2 cut(s) 228, 433
AgsI TTSAA 5 cut(s) 750, 770, 778, 863, 1053
AjnI CCWGG 2 cut(s) 164, 304
AleI CACNNNNGTG 4 cut(s) 183, 332, 356, 451
AluBI AGCT 6 cut(s) 21, 715, 746, 791, 1046, 1188
AluI AGCT 6 cut(s) 21, 715, 746, 791, 1046, 1188
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 3 cut(s) 33, 453, 1064
AlwNI CAGNNNCTG 1 cut(s) 715
Ama87I CYCGRG 2 cut(s) 354, 449
Aor51HI AGCGCT 1 cut(s) 373
AoxI GGCC 4 cut(s) 825, 876, 943, 1137
ApeKI GCWGC 8 cut(s) 369, 641, 644, 706, 850, 1046, 1102, 1169
ApoI RAATTY 1 cut(s) 724
AspLEI GCGC 3 cut(s) 348, 374, 1031
AspS9I GGNCC 3 cut(s) 235, 718, 877
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 971
AvaI CYCGRG 2 cut(s) 354, 449
AvaII GGWCC 2 cut(s) 235, 718
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 8 cut(s) 381, 628, 631, 693, 862, 1033, 1114, 1181
BccI CCATC 7 cut(s) 131, 487, 868, 901, 1007, 1126, 1164
BcgI CGANNNNNNTGC 4 cut(s) 1045, 1079, 1080, 1114
BciT130I CCWGG 2 cut(s) 166, 306
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 1176
BfmI CTRYAG 2 cut(s) 291, 707
BfoI RGCGCY 3 cut(s) 349, 375, 1032
BfuAI ACCTGC 1 cut(s) 448
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 166, 306, 315
Bme18I GGWCC 2 cut(s) 235, 718
BmeT110I CYCGRG 2 cut(s) 354, 449
BmgT120I GGNCC 3 cut(s) 235, 718, 877
BmiI GGNNCC 4 cut(s) 237, 347, 720, 879
BmrFI CCNGG 3 cut(s) 166, 306, 315
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 3 cut(s) 1053, 1108, 1181
BmuI ACTGGG 1 cut(s) 416
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 707
BpmI CTGGAG 2 cut(s) 77, 954
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 346
BsaJI CCNNGG 5 cut(s) 50, 92, 222, 999, 1113
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 5 cut(s) 391, 406, 489, 956, 957
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 6 cut(s) 7, 142, 411, 610, 729, 971
BseBI CCWGG 2 cut(s) 166, 306
BseDI CCNNGG 5 cut(s) 50, 92, 222, 999, 1113
BseGI GGATG 6 cut(s) 37, 498, 702, 912, 1018, 1123
BseLI CCNNNNNNNGG 5 cut(s) 391, 406, 489, 956, 957
BseMII CTCAG 3 cut(s) 555, 630, 1023
BseNI ACTGG 6 cut(s) 7, 142, 411, 610, 729, 971
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 943
BseXI GCAGC 8 cut(s) 381, 628, 631, 693, 862, 1033, 1114, 1181
BseYI CCCAGC 3 cut(s) 17, 21, 464
BsgI GTGCAG 2 cut(s) 388, 475
Bsh1236I CGCG 2 cut(s) 230, 380
Bsh1285I CGRYCG 2 cut(s) 535, 946
BshFI GGCC 4 cut(s) 827, 878, 945, 1139
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 2 cut(s) 535, 946
BsiHKAI GWGCWC 1 cut(s) 205
BsiHKCI CYCGRG 2 cut(s) 354, 449
BsiSI CCGG 3 cut(s) 198, 315, 824
BslFI GGGAC 3 cut(s) 221, 704, 950
BslI CCNNNNNNNGG 5 cut(s) 391, 406, 489, 956, 957
BsmFI GGGAC 3 cut(s) 221, 704, 950
BsmI GAATGC 1 cut(s) 989
BsnI GGCC 4 cut(s) 827, 878, 945, 1139
BsoBI CYCGRG 2 cut(s) 354, 449
Bsp1286I GDGCHC 2 cut(s) 205, 315
Bsp143I GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
Bsp19I CCATGG 3 cut(s) 222, 999, 1113
BspACI CCGC 9 cut(s) 47, 141, 378, 400, 422, 474, 946, 1026, 1136
BspANI GGCC 4 cut(s) 827, 878, 945, 1139
BspCNI CTCAG 3 cut(s) 554, 629, 1024
BspFNI CGCG 2 cut(s) 230, 380
BspLI GGNNCC 4 cut(s) 237, 347, 720, 879
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 3 cut(s) 33, 453, 1064
BspT107I GGYRCC 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 823
BsrI ACTGG 6 cut(s) 7, 142, 411, 610, 729, 971
BssAI RCCGGY 1 cut(s) 823
BssECI CCNNGG 5 cut(s) 50, 92, 222, 999, 1113
BssMI GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
BssNI GRCGYC 1 cut(s) 346
BssT1I CCWWGG 3 cut(s) 222, 999, 1113
Bst2UI CCWGG 2 cut(s) 166, 306
Bst4CI ACNGT 6 cut(s) 38, 182, 272, 301, 536, 1060
BstACI GRCGYC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 8 cut(s) 424, 503, 507, 789, 825, 1024, 1080, 1093
BstDEI CTNAG 5 cut(s) 522, 541, 616, 1032, 1182
BstDSI CCRYGG 3 cut(s) 222, 999, 1113
BstF5I GGATG 6 cut(s) 37, 498, 702, 912, 1018, 1123
BstFNI CGCG 2 cut(s) 230, 380
BstH2I RGCGCY 3 cut(s) 349, 375, 1032
BstHHI GCGC 3 cut(s) 348, 374, 1031
BstKTI GATC 6 cut(s) 28, 175, 339, 461, 687, 1072
BstMBI GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
BstMCI CGRYCG 2 cut(s) 535, 946
BstMWI GCNNNNNNNGC 7 cut(s) 310, 324, 428, 712, 1023, 1028, 1088
BstNI CCWGG 2 cut(s) 166, 306
BstNSI RCATGY 2 cut(s) 823, 1095
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 164, 304, 313
BstSFI CTRYAG 2 cut(s) 291, 707
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 2 cut(s) 230, 380
BstV1I GCAGC 8 cut(s) 381, 628, 631, 693, 862, 1033, 1114, 1181
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 2 cut(s) 25, 458
BstXI CCANNNNNNTGG 2 cut(s) 223, 358
BstYI RGATCY 2 cut(s) 25, 458
BstZI CGGCCG 1 cut(s) 943
BsuRI GGCC 4 cut(s) 827, 878, 945, 1139
BtgI CCRYGG 3 cut(s) 222, 999, 1113
BtsCI GGATG 6 cut(s) 37, 498, 702, 912, 1018, 1123
BtsIMutI CAGTG 3 cut(s) 14, 135, 178
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 8 cut(s) 424, 503, 507, 789, 825, 1024, 1080, 1093
CaiI CAGNNNCTG 1 cut(s) 715
CfoI GCGC 3 cut(s) 348, 374, 1031
Cfr10I RCCGGY 1 cut(s) 823
Cfr13I GGNCC 3 cut(s) 235, 718, 877
CseI GACGC 2 cut(s) 236, 712
CsiI ACCWGGT 1 cut(s) 164
Csp6I GTAC 3 cut(s) 84, 437, 603
CviQI GTAC 3 cut(s) 84, 437, 603
DdeI CTNAG 5 cut(s) 522, 541, 616, 1032, 1182
DinI GGCGCC 1 cut(s) 347
DpnI GATC 6 cut(s) 27, 174, 338, 460, 686, 1071
DpnII GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 3 cut(s) 825, 943, 1137
EagI CGGCCG 1 cut(s) 943
EclXI CGGCCG 1 cut(s) 943
Eco130I CCWWGG 3 cut(s) 222, 999, 1113
Eco47I GGWCC 2 cut(s) 235, 718
Eco47III AGCGCT 1 cut(s) 373
Eco52I CGGCCG 1 cut(s) 943
Eco72I CACGTG 1 cut(s) 434
Eco88I CYCGRG 2 cut(s) 354, 449
EcoRII CCWGG 2 cut(s) 164, 304
EcoT14I CCWWGG 3 cut(s) 222, 999, 1113
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
ErhI CCWWGG 3 cut(s) 222, 999, 1113
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 498, 530
FaqI GGGAC 3 cut(s) 221, 704, 950
FauI CCCGC 2 cut(s) 407, 415
FbaI TGATCA 1 cut(s) 336
FokI GGATG 6 cut(s) 44, 505, 709, 919, 1025, 1130
FspBI CTAG 1 cut(s) 1176
GlaI GCGC 3 cut(s) 347, 373, 1030
GsaI CCCAGC 3 cut(s) 21, 25, 468
GsuI CTGGAG 2 cut(s) 77, 954
HaeII RGCGCY 3 cut(s) 349, 375, 1032
HaeIII GGCC 4 cut(s) 827, 878, 945, 1139
HapII CCGG 3 cut(s) 198, 315, 824
HgaI GACGC 2 cut(s) 236, 712
HhaI GCGC 3 cut(s) 348, 374, 1031
Hin1I GRCGYC 1 cut(s) 346
Hin6I GCGC 3 cut(s) 346, 372, 1029
HinP1I GCGC 3 cut(s) 346, 372, 1029
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 4 cut(s) 59, 287, 539, 963
HpaII CCGG 3 cut(s) 198, 315, 824
HphI GGTGA 1 cut(s) 971
Hpy166II GTNNAC 3 cut(s) 44, 70, 437
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 44, 70, 437
Hpy99I CGWCG 1 cut(s) 581
HpyCH4III ACNGT 6 cut(s) 38, 182, 272, 301, 536, 1060
HpyCH4IV ACGT 3 cut(s) 433, 485, 667
HpyCH4V TGCA 9 cut(s) 243, 369, 431, 456, 709, 787, 850, 989, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 310, 324, 428, 712, 1023, 1028, 1088
HpyF3I CTNAG 5 cut(s) 522, 541, 616, 1032, 1182
HpySE526I ACGT 3 cut(s) 433, 485, 667
Hsp92I GRCGYC 1 cut(s) 346
HspAI GCGC 3 cut(s) 346, 372, 1029
KasI GGCGCC 1 cut(s) 345
KroNI GCCGGC 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 8 cut(s) 381, 628, 631, 693, 862, 1033, 1114, 1181
LweI GCATC 3 cut(s) 1053, 1108, 1181
MabI ACCWGGT 1 cut(s) 164
MaeI CTAG 1 cut(s) 1176
MaeII ACGT 3 cut(s) 433, 485, 667
MaeIII GTNAC 4 cut(s) 160, 536, 548, 1038
MalI GATC 6 cut(s) 27, 174, 338, 460, 686, 1071
MbiI CCGCTC 1 cut(s) 474
MboI GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
MboII GAAGA 2 cut(s) 712, 968
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 2 cut(s) 25, 458
MhlI GDGCHC 2 cut(s) 205, 315
MluCI AATT 3 cut(s) 724, 782, 1151
MluI ACGCGT 1 cut(s) 228
Mly113I GGCGCC 1 cut(s) 346
MlyI GAGTC 4 cut(s) 68, 281, 533, 972
MmeI TCCRAC 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 823
MslI CAYNNNNRTG 6 cut(s) 183, 221, 332, 356, 451, 998
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 3 cut(s) 198, 315, 824
MspR9I CCNGG 3 cut(s) 166, 306, 315
MunI CAATTG 1 cut(s) 782
Mva1269I GAATGC 1 cut(s) 989
MvaI CCWGG 2 cut(s) 166, 306
MvnI CGCG 2 cut(s) 230, 380
MwoI GCNNNNNNNGC 7 cut(s) 310, 324, 428, 712, 1023, 1028, 1088
NaeI GCCGGC 1 cut(s) 825
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 3 cut(s) 222, 999, 1113
NdeII GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
NgoMIV GCCGGC 1 cut(s) 823
NlaIV GGNNCC 4 cut(s) 237, 347, 720, 879
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 536, 548
NspI RCATGY 2 cut(s) 823, 1095
OliI CACNNNNGTG 4 cut(s) 183, 332, 356, 451
PaeI GCATGC 1 cut(s) 1095
PaeR7I CTCGAG 1 cut(s) 354
PctI GAATGC 1 cut(s) 989
PdiI GCCGGC 1 cut(s) 825
PleI GAGTC 4 cut(s) 67, 281, 533, 971
PluTI GGCGCC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
PpsI GAGTC 4 cut(s) 67, 281, 533, 971
Ppu21I YACGTR 1 cut(s) 434
PshAI GACNNNNGTC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 164, 304
PspCI CACGTG 1 cut(s) 434
PspFI CCCAGC 3 cut(s) 17, 21, 464
PspGI CCWGG 2 cut(s) 164, 304
PspN4I GGNNCC 4 cut(s) 237, 347, 720, 879
PspPI GGNCC 3 cut(s) 235, 718, 877
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 711
PstNI CAGNNNCTG 1 cut(s) 715
PsuI RGATCY 2 cut(s) 25, 458
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 3 cut(s) 85, 438, 604
RsaNI GTAC 3 cut(s) 84, 437, 603
RseI CAYNNNNRTG 6 cut(s) 183, 221, 332, 356, 451, 998
Sau3AI GATC 6 cut(s) 25, 172, 336, 458, 684, 1069
Sau96I GGNCC 3 cut(s) 235, 718, 877
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 4 cut(s) 68, 281, 533, 972
ScrFI CCNGG 3 cut(s) 166, 306, 315
SduI GDGCHC 2 cut(s) 205, 315
SexAI ACCWGGT 1 cut(s) 164
SfaNI GCATC 3 cut(s) 1053, 1108, 1181
SfcI CTRYAG 2 cut(s) 291, 707
SfoI GGCGCC 1 cut(s) 347
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 235, 718
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 6 cut(s) 183, 221, 332, 356, 451, 998
SmlI CTYRAG 2 cut(s) 354, 792
SmoI CTYRAG 2 cut(s) 354, 792
SphI GCATGC 1 cut(s) 1095
Sse9I AATT 3 cut(s) 724, 782, 1151
SsiI CCGC 9 cut(s) 47, 141, 378, 400, 422, 474, 946, 1026, 1136
SspDI GGCGCC 1 cut(s) 345
SspMI CTAG 1 cut(s) 1176
StyD4I CCNGG 3 cut(s) 164, 304, 313
StyI CCWWGG 3 cut(s) 222, 999, 1113
TaaI ACNGT 6 cut(s) 38, 182, 272, 301, 536, 1060
TaiI ACGT 3 cut(s) 436, 488, 670
TaqI TCGA 2 cut(s) 171, 355
TasI AATT 3 cut(s) 724, 782, 1151
TatI WGTACW 2 cut(s) 83, 602
TauI GCSGC 3 cut(s) 948, 1029, 1139
TscAI CASTG 3 cut(s) 14, 142, 185
TseFI GTSAC 2 cut(s) 536, 548
TseI GCWGC 8 cut(s) 369, 641, 644, 706, 850, 1046, 1102, 1169
Tsp45I GTSAC 2 cut(s) 536, 548
TspDTI ATGAA 6 cut(s) 276, 713, 830, 947, 982, 996
TspRI CASTG 3 cut(s) 14, 142, 185
VpaK11BI GGWCC 2 cut(s) 235, 718
XapI RAATTY 1 cut(s) 724
XceI RCATGY 2 cut(s) 823, 1095
XcmI CCANNNNNNNNNTGG 3 cut(s) 25, 229, 490
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 1 cut(s) 1176
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.