Rmu_co8207186.1_g000001

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8207186.1
OG0011387
Physical Location & Seq
Forward (+)
1 .. 720
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8207186.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
gttcgactatgaagtagcagagctgacatgggaaaatggccaggtggccatgcacggcttgggtctaccgcgcttgccttccaaacctgcatcctgggacaagccacgcgctactggtactctggagtccatagtcaaccaagccacctgtactttgcctcggttttccaagcctccctttgataacaccatcacttctgccactggcggtggtgctaacaaagtagttacctggttcgatcatcactgtcgtgttgccacctccggtgctccctccaacaccatgaccatggacgcgttggtcccttgcaggaacaaccaacctgatgaaccaaacagtagccttatgatagactctgtagataccgtgccaggagtgcccggcagttctggcacgggcgtgatcaatgggcgccccactcgagtggggtcgtgcagcgctaccgcgacccacaacgaggacacccgccgactgggaaaacacaaggcgggcgttgcacgtgtacctgctacacccgagtgcagatcccccagcgtgagcggtagtgccacgtttgggatggatagccagcaagccacacttgatactaagggaagcgaccgtgactcagtttgtcacagcagaccacaggcaagctctcaggctttactccataaattaat

Protein Analysis

220

Amino Acids

23.21

Weight (kDa)

7.82

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00050 AT4G00050 AT4G00050
fragaria_vesca FvH4_7g10840
malus_domestica MD07G1113200.v1.1
prunus_persica Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1
pyrus_communis pycom07g09800
rosa_chinensis RchiOBHm_Chr1g0348781
rosa_laevigata RLG00000028624
rosa_multiflora Rmu_co8207186.1_g000001 Rmu_sc0002970.1_g000013
rosa_roxburghii Rroxscaffold_4G00306600
rosa_rugosa Rorug01G0197900
rosa_samantha Rh1AG215200 Rh1BG181500 Rh1CG199600 Rh1DG211400
rosa_wichuraiana Rw1G018230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 300
Acc36I ACCTGC 2 cut(s) 95, 515
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 65
AccII CGCG 4 cut(s) 71, 109, 297, 447
AciI CCGC 6 cut(s) 69, 208, 445, 467, 489, 541
AclWI GGATC 1 cut(s) 520
AcoI YGGCCR 2 cut(s) 38, 46
AcvI CACGTG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 3 cut(s) 119, 152, 505
AfeI AGCGCT 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 458, 473, 556
AflIII ACRYGT 2 cut(s) 295, 500
AjnI CCWGG 4 cut(s) 40, 93, 231, 371
AleI CACNNNNGTG 4 cut(s) 250, 399, 423, 518
AluBI AGCT 2 cut(s) 23, 637
AluI AGCT 2 cut(s) 23, 637
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 2 cut(s) 421, 516
Aor51HI AGCGCT 1 cut(s) 440
AoxI GGCC 2 cut(s) 38, 46
ApeKI GCWGC 1 cut(s) 436
AseI ATTAAT 1 cut(s) 660
AspLEI GCGC 4 cut(s) 73, 111, 415, 441
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 421, 516
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 2 cut(s) 40, 48
BanI GGYRCC 1 cut(s) 412
BbrPI CACGTG 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 198, 554
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 4 cut(s) 42, 95, 233, 373
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 358
BfoI RGCGCY 2 cut(s) 416, 442
BfuAI ACCTGC 2 cut(s) 95, 515
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 5 cut(s) 42, 95, 233, 373, 382
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 2 cut(s) 421, 516
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 304, 414
BmrFI CCNGG 5 cut(s) 42, 95, 233, 373, 382
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 382
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 94, 159, 289
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 473, 556
Bse1I ACTGG 3 cut(s) 119, 209, 478
BseBI CCWGG 4 cut(s) 42, 95, 233, 373
BseDI CCNNGG 3 cut(s) 94, 159, 289
BseGI GGATG 2 cut(s) 90, 565
BseLI CCNNNNNNNGG 3 cut(s) 458, 473, 556
BseMII CTCAG 2 cut(s) 622, 654
BseNI ACTGG 3 cut(s) 119, 209, 478
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 448
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 2 cut(s) 455, 542
Bsh1236I CGCG 4 cut(s) 71, 109, 297, 447
Bsh1285I CGRYCG 1 cut(s) 602
BshFI GGCC 2 cut(s) 40, 48
BshNI GGYRCC 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 421, 516
BsiSI CCGG 2 cut(s) 265, 382
BslFI GGGAC 2 cut(s) 111, 288
BslI CCNNNNNNNGG 3 cut(s) 458, 473, 556
BsmFI GGGAC 2 cut(s) 111, 288
BsnI GGCC 2 cut(s) 40, 48
BsoBI CYCGRG 2 cut(s) 421, 516
Bsp1286I GDGCHC 2 cut(s) 272, 382
Bsp143I GATC 3 cut(s) 239, 403, 525
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 6 cut(s) 69, 208, 445, 467, 489, 541
BspANI GGCC 2 cut(s) 40, 48
BspCNI CTCAG 2 cut(s) 621, 653
BspFNI CGCG 4 cut(s) 71, 109, 297, 447
BspLI GGNNCC 2 cut(s) 304, 414
BspMI ACCTGC 2 cut(s) 95, 515
BspPI GGATC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 541
BsrI ACTGG 3 cut(s) 119, 209, 478
BssECI CCNNGG 3 cut(s) 94, 159, 289
BssMI GATC 3 cut(s) 239, 403, 525
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 4 cut(s) 42, 95, 233, 373
Bst4CI ACNGT 4 cut(s) 249, 339, 368, 603
BstACI GRCGYC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 501
BstC8I GCNNGC 5 cut(s) 75, 491, 570, 574, 635
BstDEI CTNAG 3 cut(s) 589, 608, 640
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 90, 565
BstFNI CGCG 4 cut(s) 71, 109, 297, 447
BstH2I RGCGCY 2 cut(s) 416, 442
BstHHI GCGC 4 cut(s) 73, 111, 415, 441
BstKTI GATC 3 cut(s) 242, 406, 528
BstMBI GATC 3 cut(s) 239, 403, 525
BstMCI CGRYCG 1 cut(s) 602
BstMWI GCNNNNNNNGC 3 cut(s) 377, 391, 495
BstNI CCWGG 4 cut(s) 42, 95, 233, 373
BstSCI CCNGG 5 cut(s) 40, 93, 231, 371, 380
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 4 cut(s) 71, 109, 297, 447
BstV1I GCAGC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 525
BstXI CCANNNNNNTGG 2 cut(s) 290, 425
BstYI RGATCY 1 cut(s) 525
BsuRI GGCC 2 cut(s) 40, 48
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 90, 565
BtsIMutI CAGTG 2 cut(s) 202, 245
BveI ACCTGC 2 cut(s) 95, 515
Cac8I GCNNGC 5 cut(s) 75, 491, 570, 574, 635
CfoI GCGC 4 cut(s) 73, 111, 415, 441
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 303
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 3 cut(s) 118, 151, 504
CviAII CATG 4 cut(s) 28, 50, 284, 290
CviQI GTAC 3 cut(s) 118, 151, 504
DdeI CTNAG 3 cut(s) 589, 608, 640
DinI GGCGCC 1 cut(s) 414
DpnI GATC 3 cut(s) 241, 405, 527
DpnII GATC 3 cut(s) 239, 403, 525
DrdI GACNNNNNNGTC 1 cut(s) 300
DseDI GACNNNNNNGTC 1 cut(s) 300
EaeI YGGCCR 2 cut(s) 38, 46
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 302
Eco47III AGCGCT 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 501
Eco88I CYCGRG 2 cut(s) 421, 516
EcoRII CCWGG 4 cut(s) 40, 93, 231, 371
EcoT14I CCWWGG 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 31, 53, 287, 293
FaiI YATR 8 cut(s) 10, 29, 51, 132, 285, 291, 348, 655
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 565, 597
FaqI GGGAC 2 cut(s) 111, 288
FatI CATG 4 cut(s) 27, 49, 283, 289
FauI CCCGC 2 cut(s) 474, 482
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 2 cut(s) 77, 572
Fsp4HI GCNGC 1 cut(s) 437
GlaI GCGC 4 cut(s) 72, 110, 414, 440
GluI GCNGC 1 cut(s) 437
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 2 cut(s) 416, 442
HaeIII GGCC 2 cut(s) 40, 48
HapII CCGG 2 cut(s) 265, 382
HgaI GACGC 1 cut(s) 303
HhaI GCGC 4 cut(s) 73, 111, 415, 441
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 4 cut(s) 31, 53, 287, 293
Hin6I GCGC 4 cut(s) 71, 109, 413, 439
HinP1I GCGC 4 cut(s) 71, 109, 413, 439
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HinfI GANTC 3 cut(s) 126, 354, 606
HpaII CCGG 2 cut(s) 265, 382
Hpy166II GTNNAC 3 cut(s) 66, 137, 504
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 3 cut(s) 66, 137, 504
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 249, 339, 368, 603
HpyCH4IV ACGT 2 cut(s) 500, 552
HpyCH4V TGCA 6 cut(s) 53, 90, 310, 436, 498, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 391, 495
HpyF3I CTNAG 3 cut(s) 589, 608, 640
HpySE526I ACGT 2 cut(s) 500, 552
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 4 cut(s) 31, 53, 287, 293
HspAI GCGC 4 cut(s) 71, 109, 413, 439
KasI GGCGCC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 239, 403, 525
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 99
MabI ACCWGGT 1 cut(s) 231
MaeII ACGT 2 cut(s) 500, 552
MaeIII GTNAC 3 cut(s) 227, 603, 615
MalI GATC 3 cut(s) 241, 405, 527
MbiI CCGCTC 1 cut(s) 541
MboI GATC 3 cut(s) 239, 403, 525
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 2 cut(s) 272, 382
MlsI TGGCCA 2 cut(s) 40, 48
MluCI AATT 1 cut(s) 657
MluI ACGCGT 1 cut(s) 295
MluNI TGGCCA 2 cut(s) 40, 48
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 3 cut(s) 135, 348, 600
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 5 cut(s) 169, 184, 272, 284, 452
Mox20I TGGCCA 2 cut(s) 40, 48
MscI TGGCCA 2 cut(s) 40, 48
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 5 cut(s) 250, 288, 399, 423, 518
Msp20I TGGCCA 2 cut(s) 40, 48
MspI CCGG 2 cut(s) 265, 382
MspR9I CCNGG 5 cut(s) 42, 95, 233, 373, 382
MvaI CCWGG 4 cut(s) 42, 95, 233, 373
MvnI CGCG 4 cut(s) 71, 109, 297, 447
MwoI GCNNNNNNNGC 3 cut(s) 377, 391, 495
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 382
NcoI CCATGG 1 cut(s) 289
NdeII GATC 3 cut(s) 239, 403, 525
NlaIII CATG 4 cut(s) 31, 53, 287, 293
NlaIV GGNNCC 2 cut(s) 304, 414
NmuCI GTSAC 2 cut(s) 603, 615
OliI CACNNNNGTG 4 cut(s) 250, 399, 423, 518
PaeR7I CTCGAG 1 cut(s) 421
PkrI GCNGC 1 cut(s) 438
PleI GAGTC 3 cut(s) 134, 348, 600
PluTI GGCGCC 1 cut(s) 416
PmaCI CACGTG 1 cut(s) 501
PmlI CACGTG 1 cut(s) 501
PpsI GAGTC 3 cut(s) 134, 348, 600
Ppu21I YACGTR 1 cut(s) 501
PshBI ATTAAT 1 cut(s) 660
Psp6I CCWGG 4 cut(s) 40, 93, 231, 371
PspCI CACGTG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 4 cut(s) 40, 93, 231, 371
PspN4I GGNNCC 2 cut(s) 304, 414
PspPI GGNCC 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 421
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 3 cut(s) 119, 152, 505
RsaNI GTAC 3 cut(s) 118, 151, 504
RseI CAYNNNNRTG 5 cut(s) 250, 288, 399, 423, 518
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 239, 403, 525
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 3 cut(s) 135, 348, 600
ScrFI CCNGG 5 cut(s) 42, 95, 233, 373, 382
SduI GDGCHC 2 cut(s) 272, 382
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 421
SmiMI CAYNNNNRTG 5 cut(s) 250, 288, 399, 423, 518
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 1 cut(s) 657
SsiI CCGC 6 cut(s) 69, 208, 445, 467, 489, 541
SspDI GGCGCC 1 cut(s) 412
StyD4I CCNGG 5 cut(s) 40, 93, 231, 371, 380
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 249, 339, 368, 603
TaiI ACGT 2 cut(s) 503, 555
TaqI TCGA 3 cut(s) 4, 238, 422
TasI AATT 1 cut(s) 657
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 209, 252
TseFI GTSAC 2 cut(s) 603, 615
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 603, 615
TspDTI ATGAA 2 cut(s) 25, 343
TspRI CASTG 2 cut(s) 209, 252
VpaK11BI GGWCC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 3 cut(s) 56, 296, 557
XhoI CTCGAG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.