Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011387

Physical Location & Seq

Genomic Coordinates Reverse (-)

27739954 .. 27743198

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCAAATTACAAAATGGCTCTAACAAATGGGTTGGAAATTCCTAAAGAAGTGCTGGATGCAGAAATCAAATCCTTTTTTGACTCAGCTCCTCCTTTAAAGAACAGAGATGATGTCAGTGAAAAACTTGAGGCATTTGTTAAAAAGAATTCGCAGCCTTCTGGAAATGGAGGAGCTAGGAGGGTGGTTTGTGTAACCTCTGGTGGTACCACGGTTCCTCTGGAGCAACGATGTGTTCGCTACATTGACAACTTCAGCTCAGGTTACAGAGGAGCAGCTTCCACAGAGTACTTTTTGAAGGCAGGCTGTGCTGTTATCTTTCTTTATCGGAGGGGAACTTGCCAACCATATTGCAGATCTCTTCCCGATGATCCGTTACTTGAATGTCTGGAAATTGTGGACGAGTCAAACATTCAAGTACACCAGTCCCATTCACAAGCAGTGAGGAGTGCTATCACTAAGAGTCATGCTGCAGTAGCAGACGGCCTCTTGCTGAAACTTCCCTTTACAACAATATTTGAGTATCTCCAGATGTTGCAGATGGTTGCGTTTACAATGCGAAGTATTGGACCACATGCCATGCTATATCTTGCAGCAGCAGTATCTGACTTTTACGTCCCTTGGAAGAGCATGGCAGAGCACAAAATTCAGTCAGGGTCTGGTCCATTGGATATGCGACTTGTTCAGGTGCCAAAGATGCTCTTAATGCTGAGGAAAGACTGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTAGAAACAGATTCAAAGATCCTGTTAGAGAAGGCTGATATGGCTCTTAGGAAGTACAAGATGCATATGGTTGTAGCCAATGAGCTTTTGAGCCGAAAAGAAGAGGTTGTAGTTGTCACCAGCAATGAAAAGATTCTAGTTCGCCGAAACAAGTCTCTGGGTGTTGATGATGTGGAGAGCGCCCTTATTGAGCTTCTTGTGGAGAGGCATTCAGCTTATGTTGATCAGATCAAGACTGATTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

333

Amino Acids

37.34

Weight (kDa)

8.07

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFP	PF04127	180 - 302	4.5e-11	DNA/pantothenate metabolism flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00050 AT4G00050 AT4G00050
fragaria_vesca	FvH4_7g10840
malus_domestica	MD07G1113200.v1.1
prunus_persica	Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1
pyrus_communis	pycom07g09800
rosa_chinensis	RchiOBHm_Chr1g0348781
rosa_laevigata	RLG00000028624
rosa_multiflora	Rmu_co8207186.1_g000001 Rmu_sc0002970.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306600
rosa_rugosa	Rorug01G0197900
rosa_samantha	Rh1AG215200 Rh1BG181500 Rh1CG199600 Rh1DG211400
rosa_wichuraiana	Rw1G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	206, 688
AclWI	GGATC	2 cut(s)	365, 766
AcsI	RAATTY	3 cut(s)	39, 148, 645
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	4 cut(s)	208, 290, 420, 809
AgsI	TTSAA	5 cut(s)	298, 383, 416, 751, 768
AluBI	AGCT	8 cut(s)	89, 176, 258, 278, 754, 838, 946, 968
AluI	AGCT	8 cut(s)	89, 176, 258, 278, 754, 838, 946, 968
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	365, 766
AlwNI	CAGNNNCTG	2 cut(s)	605, 659
AoxI	GGCC	3 cut(s)	484, 723, 732
ApaI	GGGCCC	1 cut(s)	727
ApeKI	GCWGC	5 cut(s)	154, 275, 470, 593, 596
ApoI	RAATTY	3 cut(s)	39, 148, 645
Asp700I	GAANNNNTTC	1 cut(s)	885
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	935
AspS9I	GGNCC	4 cut(s)	569, 662, 723, 724
AsuHPI	GGTGA	1 cut(s)	862
AvaII	GGWCC	2 cut(s)	569, 662
BaeGI	GKGCMC	1 cut(s)	727
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BanI	GGYRCC	2 cut(s)	206, 688
BanII	GRGCYC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	166, 287, 457, 605, 608
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	1 cut(s)	912
BfaI	CTAG	3 cut(s)	177, 755, 890
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	936
BglI	GCCNNNNNGGC	1 cut(s)	731
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	5 cut(s)	155, 276, 471, 594, 597
BlsI	GCNGC	5 cut(s)	156, 277, 472, 595, 598
BmcAI	AGTACT	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	569, 662
BmgT120I	GGNCC	4 cut(s)	569, 662, 723, 724
BmiI	GGNNCC	5 cut(s)	208, 216, 690, 725, 726
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	3 cut(s)	49, 687, 804
BmuI	ACTGGG	1 cut(s)	730
BpmI	CTGGAG	2 cut(s)	242, 512
Bpu10I	CCTNAGC	2 cut(s)	259, 710
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	210, 620, 729
Bse1I	ACTGG	2 cut(s)	424, 725
Bse3DI	GCAATG	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	210, 620, 729
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	3 cut(s)	99, 273, 701
BseNI	ACTGG	2 cut(s)	424, 725
BseRI	GAGGAG	4 cut(s)	81, 186, 285, 460
BseSI	GKGCMC	1 cut(s)	727
BseXI	GCAGC	5 cut(s)	166, 287, 457, 605, 608
BshFI	GGCC	3 cut(s)	486, 725, 734
BshNI	GGYRCC	2 cut(s)	206, 688
BsiHKAI	GWGCWC	1 cut(s)	642
BslFI	GGGAC	2 cut(s)	412, 602
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	412, 602
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	3 cut(s)	486, 725, 734
Bsp120I	GGGCCC	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	642, 727
Bsp143I	GATC	5 cut(s)	356, 370, 771, 976, 981
Bsp19I	CCATGG	1 cut(s)	729
BspANI	GGCC	3 cut(s)	486, 725, 734
BspCNI	CTCAG	3 cut(s)	98, 272, 702
BspLI	GGNNCC	5 cut(s)	208, 216, 690, 725, 726
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	365, 766
BspQI	GCTCTTC	1 cut(s)	620
BspT107I	GGYRCC	2 cut(s)	206, 688
BsrDI	GCAATG	1 cut(s)	883
BsrI	ACTGG	2 cut(s)	424, 725
BssECI	CCNNGG	3 cut(s)	210, 620, 729
BssMI	GATC	5 cut(s)	356, 370, 771, 976, 981
BssT1I	CCWWGG	2 cut(s)	620, 729
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	3 cut(s)	366, 620, 849
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	85, 259, 459, 710, 800
BstDSI	CCRYGG	2 cut(s)	210, 729
BstF5I	GGATG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	936
BstHHI	GCGC	1 cut(s)	935
BstKTI	GATC	5 cut(s)	359, 373, 774, 979, 984
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	5 cut(s)	356, 370, 771, 976, 981
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 476, 697, 706, 731, 794
BstNSI	RCATGY	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	727
BstV1I	GCAGC	5 cut(s)	166, 287, 457, 605, 608
BstX2I	RGATCY	2 cut(s)	356, 771
BstYI	RGATCY	2 cut(s)	356, 771
BsuRI	GGCC	3 cut(s)	486, 725, 734
BtgI	CCRYGG	2 cut(s)	210, 729
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	124, 447
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	2 cut(s)	605, 659
CfoI	GCGC	1 cut(s)	935
Cfr13I	GGNCC	4 cut(s)	569, 662, 723, 724
Csp6I	GTAC	4 cut(s)	207, 289, 419, 808
CviAII	CATG	5 cut(s)	467, 575, 580, 631, 730
CviQI	GTAC	4 cut(s)	207, 289, 419, 808
DdeI	CTNAG	5 cut(s)	85, 259, 459, 710, 800
DpnI	GATC	5 cut(s)	358, 372, 773, 978, 983
DpnII	GATC	5 cut(s)	356, 370, 771, 976, 981
DraI	TTTAAA	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
Eam1104I	CTCTTC	3 cut(s)	366, 620, 849
EarI	CTCTTC	3 cut(s)	366, 620, 849
Eco130I	CCWWGG	2 cut(s)	620, 729
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	569, 662
Eco57I	CTGAAG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	620, 729
EcoT22I	ATGCAT	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	2 cut(s)	620, 729
FaeI	CATG	5 cut(s)	470, 578, 583, 634, 733
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	2 cut(s)	412, 602
FatI	CATG	5 cut(s)	466, 574, 579, 630, 729
FauNDI	CATATG	1 cut(s)	819
FbaI	TGATCA	1 cut(s)	976
Fnu4HI	GCNGC	5 cut(s)	155, 276, 471, 594, 597
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	5 cut(s)	155, 276, 471, 594, 597
FspBI	CTAG	3 cut(s)	177, 755, 890
GlaI	GCGC	1 cut(s)	934
GluI	GCNGC	5 cut(s)	155, 276, 471, 594, 597
GsuI	CTGGAG	2 cut(s)	242, 512
HaeII	RGCGCY	1 cut(s)	936
HaeIII	GGCC	3 cut(s)	486, 725, 734
HhaI	GCGC	1 cut(s)	935
Hin1II	CATG	5 cut(s)	470, 578, 583, 634, 733
Hin6I	GCGC	1 cut(s)	933
HinP1I	GCGC	1 cut(s)	933
HinfI	GANTC	5 cut(s)	83, 404, 463, 764, 886
HphI	GGTGA	1 cut(s)	862
Hpy166II	GTNNAC	3 cut(s)	400, 421, 552
Hpy188I	TCNGA	3 cut(s)	330, 607, 981
Hpy188III	TCNNGA	6 cut(s)	162, 221, 365, 389, 529, 985
Hpy8I	GTNNAC	3 cut(s)	400, 421, 552
HpyAV	CCTTC	4 cut(s)	168, 292, 745, 778
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	7 cut(s)	62, 354, 473, 538, 593, 741, 817
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 476, 697, 706, 731, 794
HpyF3I	CTNAG	5 cut(s)	85, 259, 459, 710, 800
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	5 cut(s)	470, 578, 583, 634, 733
HspAI	GCGC	1 cut(s)	933
KpnI	GGTACC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	5 cut(s)	356, 370, 771, 976, 981
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	4 cut(s)	94, 173, 223, 272
Lsp1109I	GCAGC	5 cut(s)	166, 287, 457, 605, 608
LweI	GCATC	3 cut(s)	49, 687, 804
MaeI	CTAG	3 cut(s)	177, 755, 890
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	4 cut(s)	193, 263, 375, 868
MalI	GATC	5 cut(s)	358, 372, 773, 978, 983
MboI	GATC	5 cut(s)	356, 370, 771, 976, 981
MboII	GAAGA	3 cut(s)	353, 637, 866
MflI	RGATCY	2 cut(s)	356, 771
MhlI	GDGCHC	2 cut(s)	642, 727
MluCI	AATT	5 cut(s)	7, 39, 148, 393, 645
MlyI	GAGTC	3 cut(s)	77, 413, 472
MmeI	TCCRAC	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	819
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	98, 141, 704
Mva1269I	GAATGC	1 cut(s)	961
MwoI	GCNNNNNNNGC	6 cut(s)	308, 476, 697, 706, 731, 794
NcoI	CCATGG	1 cut(s)	729
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	5 cut(s)	356, 370, 771, 976, 981
NlaIII	CATG	5 cut(s)	470, 578, 583, 634, 733
NlaIV	GGNNCC	5 cut(s)	208, 216, 690, 725, 726
NmuCI	GTSAC	1 cut(s)	868
NsiI	ATGCAT	1 cut(s)	819
NspI	RCATGY	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	620
PctI	GAATGC	1 cut(s)	961
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	764, 886
PkrI	GCNGC	5 cut(s)	156, 277, 472, 595, 598
PleI	GAGTC	3 cut(s)	77, 412, 471
PpsI	GAGTC	3 cut(s)	77, 412, 471
PspN4I	GGNNCC	5 cut(s)	208, 216, 690, 725, 726
PspOMI	GGGCCC	1 cut(s)	723
PspPI	GGNCC	4 cut(s)	569, 662, 723, 724
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	2 cut(s)	605, 659
PsuI	RGATCY	2 cut(s)	356, 771
RsaI	GTAC	4 cut(s)	208, 290, 420, 809
RsaNI	GTAC	4 cut(s)	207, 289, 419, 808
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	98, 141, 704
SatI	GCNGC	5 cut(s)	155, 276, 471, 594, 597
Sau3AI	GATC	5 cut(s)	356, 370, 771, 976, 981
Sau96I	GGNCC	4 cut(s)	569, 662, 723, 724
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	3 cut(s)	77, 413, 472
SduI	GDGCHC	2 cut(s)	642, 727
SfaNI	GCATC	3 cut(s)	49, 687, 804
SfcI	CTRYAG	1 cut(s)	471
SfiI	GGCCNNNNNGGCC	1 cut(s)	731
SinI	GGWCC	2 cut(s)	569, 662
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	7, 39, 148, 393, 645
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	3 cut(s)	177, 755, 890
StyI	CCWWGG	2 cut(s)	620, 729
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	618
TasI	AATT	5 cut(s)	7, 39, 148, 393, 645
TatI	WGTACW	3 cut(s)	288, 418, 807
TfiI	GAWTC	2 cut(s)	764, 886
Tru1I	TTAA	3 cut(s)	98, 141, 704
Tru9I	TTAA	3 cut(s)	98, 141, 704
TscAI	CASTG	2 cut(s)	124, 447
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	5 cut(s)	154, 275, 470, 593, 596
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	1 cut(s)	894
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	124, 447
VpaK11BI	GGWCC	2 cut(s)	569, 662
XapI	RAATTY	3 cut(s)	39, 148, 645
XceI	RCATGY	1 cut(s)	578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	177, 755, 890
ZrmI	AGTACT	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.