Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011387

Physical Location & Seq

Genomic Coordinates Forward (+)

41089431 .. 41092753

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCACGGCTTGGGTCTACCGCGCTTGCCTTCCAAACCTGCATCCTGGGACAAGCCACGCGCTACTGGTACTCTGGAGTCCATAGTCAACCAAGCCACCTGTACTTTGCCTCGGTTTTCCAAGCCTCCCTTTGATAACACCATCACTTCTGCCACTGGCGGTTGTGCTAACAAAGTAGTGACCTGGTTTGATCATCACTGTCGTGTTGCCACCTCCGGTGCTCCCTCCAACACCATGACCATGGACGCGTTGGTCCCTTGCAGGAACAACCAACCTGATGAACCAAACAGTAGCCTTATGATAGACTCTGTAGATACCGTGCCAGGAGTGCTCGGCAGTTCTGGCACGGACATGATCAATGGGTGCTCCACTCGAGTGGGGTCGTGCAGCGCTACCGCGACCCACAACGAGGACACCCGCCGACTGGGAAAACACAAGGCGGGCGTTGCACGAGTACCTGCTACACCCGAGTGCAGATCCCCCAGCGTGAGCGGTAGTGCCACGTTTGGGATGGATAGCCAGCAAGCCACACTTGATACTAAGGGAAGCGACCGTGACTCAGTTTGTCACAGCAGACCACAGAGAGAGGAAAGCGACGAGGAGGAGAGAAAGAAGCGAAGTACTGGAAAATCCTCAGTTTCTACAAAAAGGAGTAGGGCTGCTGCTATACATAGCCAATCTGAACGTAAAAGGAGAGATAAGATCAACCAGAGGATGAAGACGCTGCAGAAGCTGGTCCCAAATTCCAGTAAGACTGATAAAGCTTCAATGCTGGACGAAGTGATTGAATACTTGAAACAATTGCAAGCTCAAGTCCATGTGATAAGCAGAATGAACATGCCAGCCATGATGTTGCCGATGGCTATGCAGCAACAACTTCAAATGTCTATGATGGCCCCAAGAAATATGGGCATGGGGATTGGGATGGGAATGGGAATGGGAATGGGAATGGACATGAACAACATCGGCCGCCCCAACATAGGGGGAGTCCCTCCGGTTCTTCACCCAACTGCATTCATGCCCATGGCTTCATGGGATGGCTCTGCCTGCGGCGCTGAGAGGTTACAAGCTGCTTCAACGACTGTGATGCCTGATCCCTTGCCAGCATTTCTTGCATGCCAATCGCAGCCGATGACCATGGATGCTTACAGCATGATGGCGGCCATGTATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

391

Amino Acids

42.2

Weight (kDa)

9.11

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	224 - 269	1.5e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	227 - 274	1.5e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00050 AT4G00050 AT4G00050
fragaria_vesca	FvH4_7g10840
malus_domestica	MD07G1113200.v1.1
prunus_persica	Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1
pyrus_communis	pycom07g09800
rosa_chinensis	RchiOBHm_Chr1g0348781
rosa_laevigata	RLG00000028624
rosa_multiflora	Rmu_co8207186.1_g000001 Rmu_sc0002970.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306600
rosa_rugosa	Rorug01G0197900
rosa_samantha	Rh1AG215200 Rh1BG181500 Rh1CG199600 Rh1DG211400
rosa_wichuraiana	Rw1G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	2 cut(s)	46, 466
AccBSI	CCGCTC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	4 cut(s)	22, 60, 248, 398
AciI	CCGC	9 cut(s)	20, 159, 396, 418, 440, 492, 970, 1050, 1160
AclWI	GGATC	2 cut(s)	471, 1088
AcoI	YGGCCR	2 cut(s)	967, 1161
AcsI	RAATTY	1 cut(s)	742
AfaI	GTAC	4 cut(s)	70, 103, 456, 622
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	5 cut(s)	409, 424, 507, 980, 981
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	768, 788, 796, 881, 1077
AjnI	CCWGG	3 cut(s)	44, 182, 322
AleI	CACNNNNGTG	3 cut(s)	201, 374, 469
AluBI	AGCT	4 cut(s)	733, 764, 809, 1070
AluI	AGCT	4 cut(s)	733, 764, 809, 1070
Alw21I	GWGCWC	3 cut(s)	223, 333, 368
AlwI	GGATC	2 cut(s)	471, 1088
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	2 cut(s)	372, 467
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	3 cut(s)	894, 967, 1161
ApeKI	GCWGC	7 cut(s)	387, 659, 662, 724, 868, 1070, 1126
ApoI	RAATTY	1 cut(s)	742
AspLEI	GCGC	4 cut(s)	24, 62, 392, 1055
AspS9I	GGNCC	3 cut(s)	253, 736, 895
AsuHPI	GGTGA	1 cut(s)	995
AvaI	CYCGRG	2 cut(s)	372, 467
AvaII	GGWCC	2 cut(s)	253, 736
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	3 cut(s)	223, 333, 368
BbvI	GCAGC	7 cut(s)	399, 646, 649, 711, 880, 1057, 1138
BccI	CCATC	7 cut(s)	149, 505, 853, 886, 919, 1031, 1150
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	6 cut(s)	847, 881, 1069, 1103, 1104, 1138
BciT130I	CCWGG	3 cut(s)	46, 184, 324
BclI	TGATCA	2 cut(s)	190, 354
BfmI	CTRYAG	2 cut(s)	309, 725
BfoI	RGCGCY	2 cut(s)	393, 1056
BfuAI	ACCTGC	2 cut(s)	46, 466
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	3 cut(s)	46, 184, 324
Bme18I	GGWCC	2 cut(s)	253, 736
BmeT110I	CYCGRG	2 cut(s)	372, 467
BmgT120I	GGNCC	3 cut(s)	253, 736, 895
BmiI	GGNNCC	3 cut(s)	255, 738, 897
BmrFI	CCNGG	3 cut(s)	46, 184, 324
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	3 cut(s)	50, 1077, 1132
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	725
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	795
BsaJI	CCNNGG	5 cut(s)	45, 110, 240, 1023, 1137
BsaWI	WCCGGW	2 cut(s)	215, 994
Bsc4I	CCNNNNNNNGG	5 cut(s)	409, 424, 507, 980, 981
Bse1I	ACTGG	5 cut(s)	70, 160, 429, 628, 747
BseBI	CCWGG	3 cut(s)	46, 184, 324
BseDI	CCNNGG	5 cut(s)	45, 110, 240, 1023, 1137
BseGI	GGATG	6 cut(s)	41, 516, 720, 930, 1042, 1147
BseLI	CCNNNNNNNGG	5 cut(s)	409, 424, 507, 980, 981
BseMII	CTCAG	3 cut(s)	573, 648, 1047
BseNI	ACTGG	5 cut(s)	70, 160, 429, 628, 747
BseRI	GAGGAG	2 cut(s)	614, 617
BseX3I	CGGCCG	1 cut(s)	967
BseXI	GCAGC	7 cut(s)	399, 646, 649, 711, 880, 1057, 1138
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	2 cut(s)	406, 493
Bsh1236I	CGCG	4 cut(s)	22, 60, 248, 398
Bsh1285I	CGRYCG	2 cut(s)	553, 970
BshFI	GGCC	3 cut(s)	896, 969, 1163
BsiEI	CGRYCG	2 cut(s)	553, 970
BsiHKAI	GWGCWC	3 cut(s)	223, 333, 368
BsiHKCI	CYCGRG	2 cut(s)	372, 467
BsiSI	CCGG	2 cut(s)	216, 995
BslFI	GGGAC	4 cut(s)	62, 239, 722, 974
BslI	CCNNNNNNNGG	5 cut(s)	409, 424, 507, 980, 981
BsmFI	GGGAC	4 cut(s)	62, 239, 722, 974
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	3 cut(s)	896, 969, 1163
BsoBI	CYCGRG	2 cut(s)	372, 467
Bsp1286I	GDGCHC	3 cut(s)	223, 333, 368
Bsp143I	GATC	5 cut(s)	190, 354, 476, 702, 1093
Bsp19I	CCATGG	3 cut(s)	240, 1023, 1137
BspACI	CCGC	9 cut(s)	20, 159, 396, 418, 440, 492, 970, 1050, 1160
BspANI	GGCC	3 cut(s)	896, 969, 1163
BspCNI	CTCAG	3 cut(s)	572, 647, 1048
BspFNI	CGCG	4 cut(s)	22, 60, 248, 398
BspLI	GGNNCC	3 cut(s)	255, 738, 897
BspMAI	CTGCAG	1 cut(s)	729
BspMI	ACCTGC	2 cut(s)	46, 466
BspPI	GGATC	2 cut(s)	471, 1088
BsrBI	CCGCTC	1 cut(s)	492
BsrI	ACTGG	5 cut(s)	70, 160, 429, 628, 747
BssECI	CCNNGG	5 cut(s)	45, 110, 240, 1023, 1137
BssMI	GATC	5 cut(s)	190, 354, 476, 702, 1093
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	3 cut(s)	240, 1023, 1137
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	3 cut(s)	46, 184, 324
Bst4CI	ACNGT	5 cut(s)	200, 290, 319, 554, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstC8I	GCNNGC	9 cut(s)	26, 442, 521, 525, 807, 843, 1048, 1104, 1117
BstDEI	CTNAG	4 cut(s)	540, 559, 634, 1056
BstDSI	CCRYGG	3 cut(s)	240, 1023, 1137
BstF5I	GGATG	6 cut(s)	41, 516, 720, 930, 1042, 1147
BstFNI	CGCG	4 cut(s)	22, 60, 248, 398
BstH2I	RGCGCY	2 cut(s)	393, 1056
BstHHI	GCGC	4 cut(s)	24, 62, 392, 1055
BstKTI	GATC	5 cut(s)	193, 357, 479, 705, 1096
BstMBI	GATC	5 cut(s)	190, 354, 476, 702, 1093
BstMCI	CGRYCG	2 cut(s)	553, 970
BstMWI	GCNNNNNNNGC	7 cut(s)	328, 342, 446, 730, 1047, 1052, 1112
BstNI	CCWGG	3 cut(s)	46, 184, 324
BstNSI	RCATGY	2 cut(s)	841, 1119
BstSCI	CCNGG	3 cut(s)	44, 182, 322
BstSFI	CTRYAG	2 cut(s)	309, 725
BstUI	CGCG	4 cut(s)	22, 60, 248, 398
BstV1I	GCAGC	7 cut(s)	399, 646, 649, 711, 880, 1057, 1138
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	2 cut(s)	241, 376
BstYI	RGATCY	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	896, 969, 1163
BtgI	CCRYGG	3 cut(s)	240, 1023, 1137
BtsCI	GGATG	6 cut(s)	41, 516, 720, 930, 1042, 1147
BtsIMutI	CAGTG	2 cut(s)	153, 196
BveI	ACCTGC	2 cut(s)	46, 466
Cac8I	GCNNGC	9 cut(s)	26, 442, 521, 525, 807, 843, 1048, 1104, 1117
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	4 cut(s)	24, 62, 392, 1055
Cfr13I	GGNCC	3 cut(s)	253, 736, 895
CseI	GACGC	2 cut(s)	254, 730
CsiI	ACCWGGT	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	69, 102, 455, 621
CviQI	GTAC	4 cut(s)	69, 102, 455, 621
DdeI	CTNAG	4 cut(s)	540, 559, 634, 1056
DpnI	GATC	5 cut(s)	192, 356, 478, 704, 1095
DpnII	GATC	5 cut(s)	190, 354, 476, 702, 1093
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	967, 1161
EagI	CGGCCG	1 cut(s)	967
EclXI	CGGCCG	1 cut(s)	967
Eco130I	CCWWGG	3 cut(s)	240, 1023, 1137
Eco47I	GGWCC	2 cut(s)	253, 736
Eco47III	AGCGCT	1 cut(s)	391
Eco52I	CGGCCG	1 cut(s)	967
Eco88I	CYCGRG	2 cut(s)	372, 467
EcoRII	CCWGG	3 cut(s)	44, 182, 322
EcoT14I	CCWWGG	3 cut(s)	240, 1023, 1137
ErhI	CCWWGG	3 cut(s)	240, 1023, 1137
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 516, 548
FaqI	GGGAC	4 cut(s)	62, 239, 722, 974
FauI	CCCGC	2 cut(s)	425, 433
FbaI	TGATCA	2 cut(s)	190, 354
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	6 cut(s)	28, 523, 727, 937, 1049, 1154
GlaI	GCGC	4 cut(s)	23, 61, 391, 1054
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	2 cut(s)	393, 1056
HaeIII	GGCC	3 cut(s)	896, 969, 1163
HapII	CCGG	2 cut(s)	216, 995
HgaI	GACGC	2 cut(s)	254, 730
HhaI	GCGC	4 cut(s)	24, 62, 392, 1055
Hin6I	GCGC	4 cut(s)	22, 60, 390, 1053
HinP1I	GCGC	4 cut(s)	22, 60, 390, 1053
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	4 cut(s)	77, 305, 557, 987
HpaII	CCGG	2 cut(s)	216, 995
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	2 cut(s)	17, 88
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	2 cut(s)	17, 88
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	5 cut(s)	200, 290, 319, 554, 1084
HpyCH4IV	ACGT	2 cut(s)	503, 685
HpyF10VI	GCNNNNNNNGC	7 cut(s)	328, 342, 446, 730, 1047, 1052, 1112
HpyF3I	CTNAG	4 cut(s)	540, 559, 634, 1056
HpySE526I	ACGT	2 cut(s)	503, 685
HspAI	GCGC	4 cut(s)	22, 60, 390, 1053
Ksp22I	TGATCA	2 cut(s)	190, 354
Kzo9I	GATC	5 cut(s)	190, 354, 476, 702, 1093
LmnI	GCTCC	2 cut(s)	226, 371
Lsp1109I	GCAGC	7 cut(s)	399, 646, 649, 711, 880, 1057, 1138
LweI	GCATC	3 cut(s)	50, 1077, 1132
MabI	ACCWGGT	1 cut(s)	182
MaeII	ACGT	2 cut(s)	503, 685
MaeIII	GTNAC	4 cut(s)	178, 554, 566, 1062
MalI	GATC	5 cut(s)	192, 356, 478, 704, 1095
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	5 cut(s)	190, 354, 476, 702, 1093
MboII	GAAGA	2 cut(s)	730, 992
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	223, 333, 368
MluCI	AATT	2 cut(s)	742, 800
MluI	ACGCGT	1 cut(s)	246
MlyI	GAGTC	4 cut(s)	86, 299, 551, 996
MmeI	TCCRAC	1 cut(s)	252
MslI	CAYNNNNRTG	6 cut(s)	201, 239, 350, 374, 469, 1022
MspI	CCGG	2 cut(s)	216, 995
MspR9I	CCNGG	3 cut(s)	46, 184, 324
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	1013
MvaI	CCWGG	3 cut(s)	46, 184, 324
MvnI	CGCG	4 cut(s)	22, 60, 248, 398
MwoI	GCNNNNNNNGC	7 cut(s)	328, 342, 446, 730, 1047, 1052, 1112
NcoI	CCATGG	3 cut(s)	240, 1023, 1137
NdeII	GATC	5 cut(s)	190, 354, 476, 702, 1093
NlaIV	GGNNCC	3 cut(s)	255, 738, 897
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	3 cut(s)	178, 554, 566
NspI	RCATGY	2 cut(s)	841, 1119
OliI	CACNNNNGTG	3 cut(s)	201, 374, 469
PaeI	GCATGC	1 cut(s)	1119
PaeR7I	CTCGAG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	1013
PleI	GAGTC	4 cut(s)	85, 299, 551, 995
PpsI	GAGTC	4 cut(s)	85, 299, 551, 995
Psp6I	CCWGG	3 cut(s)	44, 182, 322
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	3 cut(s)	44, 182, 322
PspN4I	GGNNCC	3 cut(s)	255, 738, 897
PspPI	GGNCC	3 cut(s)	253, 736, 895
PspXI	VCTCGAGB	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	4 cut(s)	70, 103, 456, 622
RsaNI	GTAC	4 cut(s)	69, 102, 455, 621
RseI	CAYNNNNRTG	6 cut(s)	201, 239, 350, 374, 469, 1022
Sau3AI	GATC	5 cut(s)	190, 354, 476, 702, 1093
Sau96I	GGNCC	3 cut(s)	253, 736, 895
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	4 cut(s)	86, 299, 551, 996
ScrFI	CCNGG	3 cut(s)	46, 184, 324
SduI	GDGCHC	3 cut(s)	223, 333, 368
SexAI	ACCWGGT	1 cut(s)	182
SfaNI	GCATC	3 cut(s)	50, 1077, 1132
SfcI	CTRYAG	2 cut(s)	309, 725
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	253, 736
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	6 cut(s)	201, 239, 350, 374, 469, 1022
SmlI	CTYRAG	2 cut(s)	372, 810
SmoI	CTYRAG	2 cut(s)	372, 810
SphI	GCATGC	1 cut(s)	1119
Sse9I	AATT	2 cut(s)	742, 800
SsiI	CCGC	9 cut(s)	20, 159, 396, 418, 440, 492, 970, 1050, 1160
StyD4I	CCNGG	3 cut(s)	44, 182, 322
StyI	CCWWGG	3 cut(s)	240, 1023, 1137
TaaI	ACNGT	5 cut(s)	200, 290, 319, 554, 1084
TaiI	ACGT	2 cut(s)	506, 688
TaqI	TCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	742, 800
TatI	WGTACW	2 cut(s)	101, 620
TauI	GCSGC	3 cut(s)	972, 1053, 1163
TscAI	CASTG	2 cut(s)	160, 203
TseFI	GTSAC	3 cut(s)	178, 554, 566
TseI	GCWGC	7 cut(s)	387, 659, 662, 724, 868, 1070, 1126
Tsp45I	GTSAC	3 cut(s)	178, 554, 566
TspDTI	ATGAA	6 cut(s)	294, 731, 848, 971, 1006, 1020
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	160, 203
VpaK11BI	GGWCC	2 cut(s)	253, 736
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	2 cut(s)	841, 1119
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 508
XhoI	CTCGAG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	16
ZrmI	AGTACT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.