Rh1BG181500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011387
Physical Location & Seq
Forward (+)
28925327 .. 28928762
3436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG181500.1

Sequence Viewer

Length: 945 bp
ATGAGCCAGTGTGTTCCCAGCTGGGATCTTGATGACAGTAGTCCACCGCCGAGGCTCTCTCTTCGTTCTCACTCCAATTCCACCGCTCCTGATGTTCCCATGTTCGACTATGAAGTAGCAGAGCTGACATGGGAAAATGGCCAGGTGGCCATGCACGGCTTGGGTCTACCGCGCTTGCCTTCCAAACCTGCATCCTGGGACAAGCCACGCGCTACTGGTACTCTGGAGTCCATAGTCAACCAAGCCACCTGTACTTTGCCTCGGTTTTCCAAGCCTCCCTTTGATAACACCATCACTTCTGCCACTGGCGGTTGTGCTAACAAAGTAGTGACCTGGTTTGATCATCACTGTCGTGTTGCCACCTCCGGTGCTCCCTCCAACACCATGACCATGGACGCGTTGGTCCCTTGCAGGAACAACCAACCTGATGAACCAAACAGTAGCCTTATGATAGACTCTGTAGATACCGTGCCAGGAGTGCTCGGCAGTTCTGGCACGGACATGATCAATGGGTGCTCCACTCGAGTGGGGTCGTGCAGCGCTACCGCGACCCACAACGAGGACACCCGCCGACTGGGAAAACACAAGGCGGGCGTTGCACGAGTACCTGCTACACCCGAGTGCAGATCCCCCAGCGTGAGCGGTAGTGCCACGTTTGGGATGGATAGCCAGCAAGCCACACTTGATACTAAGGGAAGCGACCGTGACTCAGTTTGTCACAGCAGACCACAGAGAGAGGAAAGCGACGAGGAGGAGAGAAAGAAGCGAAGTACTGGAAAATCCTCAGTTTCTACAAAAAGGAGTAGGGCTGCTGCTATACATAGCCAATCTGAACGTGTATGCTATCTCTCACCAGCTCTTTTCTCAAACACGGCCTTCTCAATCCAATCATATGTATTGGAATTTTCTTTGTTAGGTATTCATGAAATAGGATTGATTAATTAG

Protein Analysis

314

Amino Acids

33.77

Weight (kDa)

6.31

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00050 AT4G00050 AT4G00050
fragaria_vesca FvH4_7g10840
malus_domestica MD07G1113200.v1.1
prunus_persica Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1 Prupe.2G136300_v2.0.a1
pyrus_communis pycom07g09800
rosa_chinensis RchiOBHm_Chr1g0348781
rosa_laevigata RLG00000028624
rosa_multiflora Rmu_co8207186.1_g000001 Rmu_sc0002970.1_g000013
rosa_roxburghii Rroxscaffold_4G00306600
rosa_rugosa Rorug01G0197900
rosa_samantha Rh1AG215200 Rh1BG181500 Rh1CG199600 Rh1DG211400
rosa_wichuraiana Rw1G018230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
Acc36I ACCTGC 2 cut(s) 196, 616
AccBSI CCGCTC 2 cut(s) 86, 642
AccI GTMKAC 1 cut(s) 166
AccII CGCG 4 cut(s) 172, 210, 398, 548
AciI CCGC 8 cut(s) 47, 84, 170, 309, 546, 568, 590, 642
AclWI GGATC 2 cut(s) 33, 621
AcoI YGGCCR 2 cut(s) 139, 147
AcsI RAATTY 1 cut(s) 902
AfaI GTAC 4 cut(s) 220, 253, 606, 772
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 3 cut(s) 559, 574, 657
AflIII ACRYGT 2 cut(s) 396, 835
AjnI CCWGG 4 cut(s) 141, 194, 332, 472
AleI CACNNNNGTG 3 cut(s) 351, 524, 619
AluBI AGCT 3 cut(s) 21, 124, 857
AluI AGCT 3 cut(s) 21, 124, 857
Alw21I GWGCWC 3 cut(s) 373, 483, 518
AlwI GGATC 2 cut(s) 33, 621
Ama87I CYCGRG 2 cut(s) 522, 617
Aor51HI AGCGCT 1 cut(s) 541
AoxI GGCC 3 cut(s) 139, 147, 873
ApeKI GCWGC 3 cut(s) 537, 809, 812
ApoI RAATTY 1 cut(s) 902
AseI ATTAAT 1 cut(s) 939
AspLEI GCGC 3 cut(s) 174, 212, 542
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 843
AvaI CYCGRG 2 cut(s) 522, 617
AvaII GGWCC 1 cut(s) 403
BalI TGGCCA 2 cut(s) 141, 149
BauI CACGAG 1 cut(s) 600
Bbv12I GWGCWC 3 cut(s) 373, 483, 518
BbvI GCAGC 3 cut(s) 549, 796, 799
BccI CCATC 2 cut(s) 299, 655
BceAI ACGGC 2 cut(s) 172, 888
BciT130I CCWGG 4 cut(s) 143, 196, 334, 474
BclI TGATCA 2 cut(s) 340, 504
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 2 cut(s) 196, 616
BisI GCNGC 3 cut(s) 538, 810, 813
BlsI GCNGC 3 cut(s) 539, 811, 814
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 4 cut(s) 143, 196, 334, 474
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 2 cut(s) 522, 617
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 4 cut(s) 143, 196, 334, 474
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 584
BoxI GACNNNNGTC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 43, 75
BpmI CTGGAG 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 50, 195, 260, 390
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 574, 657
Bse1I ACTGG 5 cut(s) 7, 220, 310, 579, 778
BseBI CCWGG 4 cut(s) 143, 196, 334, 474
BseDI CCNNGG 4 cut(s) 50, 195, 260, 390
BseGI GGATG 2 cut(s) 191, 666
BseLI CCNNNNNNNGG 3 cut(s) 559, 574, 657
BseMII CTCAG 2 cut(s) 723, 798
BseNI ACTGG 5 cut(s) 7, 220, 310, 579, 778
BseRI GAGGAG 2 cut(s) 764, 767
BseXI GCAGC 3 cut(s) 549, 796, 799
BseYI CCCAGC 3 cut(s) 17, 21, 632
BsgI GTGCAG 2 cut(s) 556, 643
Bsh1236I CGCG 4 cut(s) 172, 210, 398, 548
Bsh1285I CGRYCG 1 cut(s) 703
BshFI GGCC 3 cut(s) 141, 149, 875
BsiEI CGRYCG 1 cut(s) 703
BsiHKAI GWGCWC 3 cut(s) 373, 483, 518
BsiHKCI CYCGRG 2 cut(s) 522, 617
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 2 cut(s) 212, 389
BslI CCNNNNNNNGG 3 cut(s) 559, 574, 657
BsmFI GGGAC 2 cut(s) 212, 389
BsnI GGCC 3 cut(s) 141, 149, 875
BsoBI CYCGRG 2 cut(s) 522, 617
Bsp1286I GDGCHC 3 cut(s) 373, 483, 518
Bsp143I GATC 4 cut(s) 25, 340, 504, 626
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 8 cut(s) 47, 84, 170, 309, 546, 568, 590, 642
BspANI GGCC 3 cut(s) 141, 149, 875
BspCNI CTCAG 2 cut(s) 722, 797
BspFNI CGCG 4 cut(s) 172, 210, 398, 548
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 1 cut(s) 405
BspMI ACCTGC 2 cut(s) 196, 616
BspPI GGATC 2 cut(s) 33, 621
BsrBI CCGCTC 2 cut(s) 86, 642
BsrI ACTGG 5 cut(s) 7, 220, 310, 579, 778
BssECI CCNNGG 4 cut(s) 50, 195, 260, 390
BssMI GATC 4 cut(s) 25, 340, 504, 626
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 4 cut(s) 143, 196, 334, 474
Bst4CI ACNGT 5 cut(s) 38, 350, 440, 469, 704
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 4 cut(s) 176, 592, 671, 675
BstDEI CTNAG 3 cut(s) 690, 709, 784
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 191, 666
BstFNI CGCG 4 cut(s) 172, 210, 398, 548
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 174, 212, 542
BstKTI GATC 4 cut(s) 28, 343, 507, 629
BstMBI GATC 4 cut(s) 25, 340, 504, 626
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 3 cut(s) 478, 492, 596
BstNI CCWGG 4 cut(s) 143, 196, 334, 474
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 4 cut(s) 141, 194, 332, 472
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 4 cut(s) 172, 210, 398, 548
BstV1I GCAGC 3 cut(s) 549, 796, 799
BstX2I RGATCY 2 cut(s) 25, 626
BstXI CCANNNNNNTGG 2 cut(s) 391, 526
BstYI RGATCY 2 cut(s) 25, 626
BsuRI GGCC 3 cut(s) 141, 149, 875
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 191, 666
BtsIMutI CAGTG 3 cut(s) 14, 303, 346
BveI ACCTGC 2 cut(s) 196, 616
Cac8I GCNNGC 4 cut(s) 176, 592, 671, 675
CciI TCATGA 1 cut(s) 922
CfoI GCGC 3 cut(s) 174, 212, 542
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 404
CsiI ACCWGGT 1 cut(s) 332
Csp6I GTAC 4 cut(s) 219, 252, 605, 771
CviAII CATG 7 cut(s) 100, 129, 151, 385, 391, 502, 923
CviQI GTAC 4 cut(s) 219, 252, 605, 771
DdeI CTNAG 3 cut(s) 690, 709, 784
DpnI GATC 4 cut(s) 27, 342, 506, 628
DpnII GATC 4 cut(s) 25, 340, 504, 626
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 2 cut(s) 139, 147
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 403
Eco47III AGCGCT 1 cut(s) 541
Eco88I CYCGRG 2 cut(s) 522, 617
EcoRII CCWGG 4 cut(s) 141, 194, 332, 472
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 7 cut(s) 103, 132, 154, 388, 394, 505, 926
FalI AAGNNNNNCTT 4 cut(s) 263, 295, 666, 698
FaqI GGGAC 2 cut(s) 212, 389
FatI CATG 7 cut(s) 99, 128, 150, 384, 390, 501, 922
FauI CCCGC 2 cut(s) 575, 583
FauNDI CATATG 1 cut(s) 892
FbaI TGATCA 2 cut(s) 340, 504
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 538, 810, 813
FokI GGATG 2 cut(s) 178, 673
Fsp4HI GCNGC 3 cut(s) 538, 810, 813
GlaI GCGC 3 cut(s) 173, 211, 541
GluI GCNGC 3 cut(s) 538, 810, 813
GsaI CCCAGC 3 cut(s) 21, 25, 636
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 3 cut(s) 141, 149, 875
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 404
HhaI GCGC 3 cut(s) 174, 212, 542
Hin1II CATG 7 cut(s) 103, 132, 154, 388, 394, 505, 926
Hin6I GCGC 3 cut(s) 172, 210, 540
HinP1I GCGC 3 cut(s) 172, 210, 540
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 227, 455, 707
HpaII CCGG 1 cut(s) 366
HphI GGTGA 1 cut(s) 843
Hpy166II GTNNAC 3 cut(s) 44, 167, 238
Hpy188I TCNGA 1 cut(s) 832
Hpy188III TCNNGA 4 cut(s) 29, 89, 224, 923
Hpy8I GTNNAC 3 cut(s) 44, 167, 238
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 2 cut(s) 189, 886
HpyCH4III ACNGT 5 cut(s) 38, 350, 440, 469, 704
HpyCH4IV ACGT 2 cut(s) 653, 835
HpyCH4V TGCA 6 cut(s) 154, 191, 411, 537, 599, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 478, 492, 596
HpyF3I CTNAG 3 cut(s) 690, 709, 784
HpySE526I ACGT 2 cut(s) 653, 835
Hsp92II CATG 7 cut(s) 103, 132, 154, 388, 394, 505, 926
HspAI GCGC 3 cut(s) 172, 210, 540
Ksp22I TGATCA 2 cut(s) 340, 504
Kzo9I GATC 4 cut(s) 25, 340, 504, 626
LmnI GCTCC 3 cut(s) 91, 376, 521
Lsp1109I GCAGC 3 cut(s) 549, 796, 799
LweI GCATC 1 cut(s) 200
MabI ACCWGGT 1 cut(s) 332
MaeII ACGT 2 cut(s) 653, 835
MaeIII GTNAC 3 cut(s) 328, 704, 716
MalI GATC 4 cut(s) 27, 342, 506, 628
MbiI CCGCTC 2 cut(s) 86, 642
MboI GATC 4 cut(s) 25, 340, 504, 626
MboII GAAGA 1 cut(s) 53
MflI RGATCY 2 cut(s) 25, 626
MhlI GDGCHC 3 cut(s) 373, 483, 518
MlsI TGGCCA 2 cut(s) 141, 149
MluCI AATT 3 cut(s) 76, 902, 940
MluI ACGCGT 1 cut(s) 396
MluNI TGGCCA 2 cut(s) 141, 149
MlyI GAGTC 3 cut(s) 236, 449, 701
MmeI TCCRAC 1 cut(s) 402
Mox20I TGGCCA 2 cut(s) 141, 149
MscI TGGCCA 2 cut(s) 141, 149
MseI TTAA 1 cut(s) 939
MslI CAYNNNNRTG 5 cut(s) 351, 389, 500, 524, 619
Msp20I TGGCCA 2 cut(s) 141, 149
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 4 cut(s) 143, 196, 334, 474
MvaI CCWGG 4 cut(s) 143, 196, 334, 474
MvnI CGCG 4 cut(s) 172, 210, 398, 548
MwoI GCNNNNNNNGC 3 cut(s) 478, 492, 596
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 892
NdeII GATC 4 cut(s) 25, 340, 504, 626
NlaIII CATG 7 cut(s) 103, 132, 154, 388, 394, 505, 926
NlaIV GGNNCC 1 cut(s) 405
NmeAIII GCCGAG 2 cut(s) 75, 462
NmuCI GTSAC 3 cut(s) 328, 704, 716
OliI CACNNNNGTG 3 cut(s) 351, 524, 619
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 1 cut(s) 922
PkrI GCNGC 3 cut(s) 539, 811, 814
PleI GAGTC 3 cut(s) 235, 449, 701
PpsI GAGTC 3 cut(s) 235, 449, 701
PshAI GACNNNNGTC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 939
Psp6I CCWGG 4 cut(s) 141, 194, 332, 472
PspFI CCCAGC 3 cut(s) 17, 21, 632
PspGI CCWGG 4 cut(s) 141, 194, 332, 472
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 522
PsuI RGATCY 2 cut(s) 25, 626
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 4 cut(s) 220, 253, 606, 772
RsaNI GTAC 4 cut(s) 219, 252, 605, 771
RseI CAYNNNNRTG 5 cut(s) 351, 389, 500, 524, 619
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 3 cut(s) 538, 810, 813
Sau3AI GATC 4 cut(s) 25, 340, 504, 626
Sau96I GGNCC 1 cut(s) 403
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 3 cut(s) 236, 449, 701
ScrFI CCNGG 4 cut(s) 143, 196, 334, 474
SduI GDGCHC 3 cut(s) 373, 483, 518
SexAI ACCWGGT 1 cut(s) 332
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 5 cut(s) 351, 389, 500, 524, 619
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 3 cut(s) 76, 902, 940
SsiI CCGC 8 cut(s) 47, 84, 170, 309, 546, 568, 590, 642
StyD4I CCNGG 4 cut(s) 141, 194, 332, 472
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 5 cut(s) 38, 350, 440, 469, 704
TaiI ACGT 2 cut(s) 656, 838
TaqI TCGA 2 cut(s) 105, 523
TasI AATT 3 cut(s) 76, 902, 940
TatI WGTACW 2 cut(s) 251, 770
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TscAI CASTG 3 cut(s) 14, 310, 353
TseFI GTSAC 3 cut(s) 328, 704, 716
TseI GCWGC 3 cut(s) 537, 809, 812
Tsp45I GTSAC 3 cut(s) 328, 704, 716
TspDTI ATGAA 4 cut(s) 126, 444, 911, 939
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 3 cut(s) 14, 310, 353
VpaK11BI GGWCC 1 cut(s) 403
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 397, 658
XhoI CTCGAG 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.