pycom07g09800

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
9266879 .. 9272212
5334 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09800.1

Sequence Viewer

Length: 1365 bp
ATGAGCCAGCGAGTTCCTAGCTGGGATCTTGATGAAACTGCTACTACTCCACCTGCTCCTAGGCTCTCTTCTCGCTCCCACTCCCTTCACACAGCACCTACAGATATCCCTCTGTTGGACTACGAAGTAGCAGAGTTGACATGGGAAAACGGCGAGGTAGCCATGCACGGCTTAGGACCACCGCGCCTGTTGGCGAAGCCTTTATCTATGACTACTAAGTACACCACCTGGGACAAGCCCCGGGCAAGTGGCACCCTTGAATCAATAGTCAACCAAGCCACATCCACAGCTTTACCCTGTCCTCTCAAGCCTCCCTTTGATTCTTCCTCTGGTGGCGGCAGCGGCGCTAAGGAACTATTGACCTGGTTTGATCGACACCGTGCTGTAGCAACGCCCTCCACCACTGTGACTATGGACGCATTGGTTCCTTGCAGGAACCAAAGTGATGACCCAAGTAGTCAAATGATCGAGTCCATATCCATGCCAGGGGTGATTTCTGGTGCGGGCATGGTAGGATGCTCCACTCGAGTAGATTCGTGCAGTGGCACCACTGGTGCCGCCACACACGACGATGACACCCTTCTTTCTGGAAAAGGAACGAGCTTGGCACGTGTCCCTGAAACACCTGAGTGGAGCAGCAGATCGCAAAGTGTGAGTGGTAGTGCCACGTTTGGGATCGATAGCCAACATGTTACACTTGACAGCACAAAGGCAAGCGACTATGACTCCGTTTGTCACAGTAGACCACAGGGGGAGGTAGGAGATGAAGATGACAGAAAGAAACGAAGTACTGGAAAATCTTCGATTTCTACAAAAAGGAGTAGGGCTGCCGCTATTCATAACCAGTCTGAACGAAAAAGGAGAGATAAGATCAATCAAAGGATGAAGACGCTGCAGAAGCTGGTCCCAAATTCCAGTAAGACTGATAAAGCTTCAATGCTAGACGAAGTGATTGAATATTTGAAGCAATTGCAAGCACAAGTCCAAATGATAAGCAGAATGAACATGCCTGCCATGATGTTACCAATGGCCATGCAACAACTTCAAATGTCTATGATGGCCGCCGCCCCAAGAAACATGGGGATGGGCATGGGAATAGGGATGGGAATGGGAATGGACATGAACAACATTGGCCGCCCCGGCATTCCTCCGGTTCTTCACCCATCCGCATTCATGCCCATGGCGGCTTCTTGGGATGGCACCGGCGGTGACAGGCTACCAGCTGCTTCAACGGGAGTAATGCCTGATCACTTGTCGGCGTTCCTCGCATGCCAATCACAGCCTATGACCATGGATGCTTACAGCATGATGGCAGCCATGTATCAGCAGTTCCATCAACCTCCAGCATCTAGCTCTAAGGGCTAA

Protein Analysis

455

Amino Acids

48.76

Weight (kDa)

6.83

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 280 - 325 4.3e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 283 - 327 2.5e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011387)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
AccB1I GGYRCC 4 cut(s) 251, 545, 554, 1199
AccI GTMKAC 1 cut(s) 742
AccII CGCG 1 cut(s) 184
AclWI GGATC 2 cut(s) 33, 683
AcoI YGGCCR 3 cut(s) 1029, 1059, 1132
AcsI RAATTY 1 cut(s) 910
AcvI CACGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 221, 790
AfiI CCNNNNNNNGG 3 cut(s) 115, 486, 672
AflIII ACRYGT 2 cut(s) 610, 688
AgsI TTSAA 6 cut(s) 260, 936, 956, 964, 1046, 1230
AjnI CCWGG 3 cut(s) 227, 362, 484
AleI CACNNNNGTG 2 cut(s) 404, 628
AluBI AGCT 7 cut(s) 21, 290, 603, 901, 932, 1223, 1353
AluI AGCT 7 cut(s) 21, 290, 603, 901, 932, 1223, 1353
AlwI GGATC 2 cut(s) 33, 683
AlwNI CAGNNNCTG 1 cut(s) 901
Ama87I CYCGRG 2 cut(s) 240, 525
AoxI GGCC 3 cut(s) 1029, 1059, 1132
ApeKI GCWGC 6 cut(s) 339, 636, 827, 892, 1223, 1313
ApoI RAATTY 1 cut(s) 910
Asp700I GAANNNNTTC 1 cut(s) 799
AspA2I CCTAGG 1 cut(s) 59
AspLEI GCGC 2 cut(s) 186, 347
AspS9I GGNCC 2 cut(s) 176, 904
AsuC2I CCSGG 3 cut(s) 241, 242, 1140
AsuHPI GGTGA 3 cut(s) 502, 1151, 1220
AvaI CYCGRG 2 cut(s) 240, 525
AvaII GGWCC 2 cut(s) 176, 904
AvrII CCTAGG 1 cut(s) 59
BalI TGGCCA 1 cut(s) 1031
BanI GGYRCC 4 cut(s) 251, 545, 554, 1199
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 893
BbvI GCAGC 6 cut(s) 351, 648, 814, 879, 1210, 1325
BccI CCATC 7 cut(s) 1051, 1078, 1096, 1171, 1190, 1303, 1341
BceAI ACGGC 2 cut(s) 166, 184
BciT130I CCWGG 3 cut(s) 229, 364, 486
BclI TGATCA 1 cut(s) 1246
BcnI CCSGG 3 cut(s) 241, 242, 1140
BfaI CTAG 4 cut(s) 18, 60, 941, 1350
BfmI CTRYAG 3 cut(s) 99, 384, 893
BfoI RGCGCY 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 61
BglI GCCNNNNNGGC 1 cut(s) 1140
BlnI CCTAGG 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 6 cut(s) 229, 241, 242, 364, 486, 1140
Bme18I GGWCC 2 cut(s) 176, 904
BmeT110I CYCGRG 2 cut(s) 240, 525
BmgT120I GGNCC 2 cut(s) 176, 904
BmiI GGNNCC 7 cut(s) 253, 426, 437, 547, 556, 906, 1201
BmrFI CCNGG 6 cut(s) 229, 241, 242, 364, 486, 1140
BmsI GCATC 3 cut(s) 506, 1285, 1355
BpiI GAAGAC 1 cut(s) 893
BpmI CTGGAG 1 cut(s) 1326
Bpu10I CCTNAGC 2 cut(s) 172, 348
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 3 cut(s) 241, 242, 1140
Bsa29I ATCGAT 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 611
BsaJI CCNNGG 8 cut(s) 59, 228, 239, 240, 485, 1138, 1179, 1290
BsaWI WCCGGW 1 cut(s) 1150
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 486, 672
Bse118I RCCGGY 1 cut(s) 1202
Bse1I ACTGG 4 cut(s) 556, 796, 844, 915
BseBI CCWGG 3 cut(s) 229, 364, 486
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 8 cut(s) 59, 228, 239, 240, 485, 1138, 1179, 1290
BseGI GGATG 8 cut(s) 281, 521, 888, 1089, 1107, 1163, 1201, 1300
BseLI CCNNNNNNNGG 3 cut(s) 115, 486, 672
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 4 cut(s) 556, 796, 844, 915
BseXI GCAGC 6 cut(s) 351, 648, 814, 879, 1210, 1325
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 559
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 1031, 1061, 1134
BshNI GGYRCC 4 cut(s) 251, 545, 554, 1199
BshVI ATCGAT 1 cut(s) 678
BsiHKCI CYCGRG 2 cut(s) 240, 525
BsiSI CCGG 4 cut(s) 241, 1140, 1151, 1203
BslFI GGGAC 3 cut(s) 245, 599, 890
BslI CCNNNNNNNGG 3 cut(s) 115, 486, 672
BsmFI GGGAC 3 cut(s) 245, 599, 890
BsmI GAATGC 2 cut(s) 1143, 1169
BsnI GGCC 3 cut(s) 1031, 1061, 1134
BsoBI CYCGRG 2 cut(s) 240, 525
Bsp143I GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
Bsp19I CCATGG 2 cut(s) 1179, 1290
BspANI GGCC 3 cut(s) 1031, 1061, 1134
BspCNI CTCAG 1 cut(s) 619
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 7 cut(s) 253, 426, 437, 547, 556, 906, 1201
BspMAI CTGCAG 1 cut(s) 897
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 2 cut(s) 33, 683
BspT107I GGYRCC 4 cut(s) 251, 545, 554, 1199
BsrFI RCCGGY 1 cut(s) 1202
BsrI ACTGG 4 cut(s) 556, 796, 844, 915
BssAI RCCGGY 1 cut(s) 1202
BssECI CCNNGG 8 cut(s) 59, 228, 239, 240, 485, 1138, 1179, 1290
BssMI GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
BssT1I CCWWGG 3 cut(s) 59, 1179, 1290
Bst2UI CCWGG 3 cut(s) 229, 364, 486
Bst4CI ACNGT 3 cut(s) 380, 406, 740
Bst6I CTCTTC 1 cut(s) 73
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 8, 505, 715, 975, 1011, 1270
BstDEI CTNAG 5 cut(s) 172, 216, 348, 627, 1356
BstDSI CCRYGG 2 cut(s) 1179, 1290
BstF5I GGATG 8 cut(s) 281, 521, 888, 1089, 1107, 1163, 1201, 1300
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 2 cut(s) 186, 347
BstKTI GATC 7 cut(s) 28, 373, 468, 644, 678, 873, 1249
BstMBI GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
BstMWI GCNNNNNNNGC 5 cut(s) 342, 898, 1140, 1265, 1359
BstNI CCWGG 3 cut(s) 229, 364, 486
BstNSI RCATGY 3 cut(s) 692, 1009, 1272
BstSCI CCNGG 6 cut(s) 227, 239, 240, 362, 484, 1138
BstSFI CTRYAG 3 cut(s) 99, 384, 893
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 6 cut(s) 351, 648, 814, 879, 1210, 1325
BstV2I GAAGAC 1 cut(s) 893
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 3 cut(s) 1031, 1061, 1134
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 2 cut(s) 1179, 1290
BtsCI GGATG 8 cut(s) 281, 521, 888, 1089, 1107, 1163, 1201, 1300
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 3 cut(s) 402, 547, 549
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 6 cut(s) 8, 505, 715, 975, 1011, 1270
CaiI CAGNNNCTG 1 cut(s) 901
CfoI GCGC 2 cut(s) 186, 347
Cfr10I RCCGGY 1 cut(s) 1202
Cfr13I GGNCC 2 cut(s) 176, 904
Cfr9I CCCGGG 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 2 cut(s) 425, 898
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 2 cut(s) 220, 789
CviQI GTAC 2 cut(s) 220, 789
DdeI CTNAG 5 cut(s) 172, 216, 348, 627, 1356
DpnI GATC 7 cut(s) 27, 372, 467, 643, 677, 872, 1248
DpnII GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
EaeI YGGCCR 3 cut(s) 1029, 1059, 1132
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 59, 1179, 1290
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 176, 904
Eco72I CACGTG 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 240, 525
EcoRII CCWGG 3 cut(s) 227, 362, 484
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 59, 1179, 1290
ErhI CCWWGG 3 cut(s) 59, 1179, 1290
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 3 cut(s) 245, 599, 890
FauI CCCGC 1 cut(s) 496
FbaI TGATCA 1 cut(s) 1246
FblI GTMKAC 1 cut(s) 742
FokI GGATG 8 cut(s) 268, 528, 895, 1096, 1114, 1150, 1208, 1307
FspBI CTAG 4 cut(s) 18, 60, 941, 1350
GlaI GCGC 2 cut(s) 185, 346
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 1326
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 3 cut(s) 1031, 1061, 1134
HapII CCGG 4 cut(s) 241, 1140, 1151, 1203
HgaI GACGC 2 cut(s) 425, 898
HhaI GCGC 2 cut(s) 186, 347
Hin6I GCGC 2 cut(s) 184, 345
HinP1I GCGC 2 cut(s) 184, 345
HincII GTYRAC 2 cut(s) 138, 271
HindII GTYRAC 2 cut(s) 138, 271
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 5 cut(s) 260, 320, 470, 533, 725
HpaII CCGG 4 cut(s) 241, 1140, 1151, 1203
HphI GGTGA 3 cut(s) 502, 1151, 1220
Hpy166II GTNNAC 4 cut(s) 138, 222, 271, 743
Hpy188I TCNGA 1 cut(s) 850
Hpy188III TCNNGA 2 cut(s) 29, 588
Hpy8I GTNNAC 4 cut(s) 138, 222, 271, 743
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 95, 590
HpyCH4III ACNGT 3 cut(s) 380, 406, 740
HpyCH4IV ACGT 2 cut(s) 610, 668
HpyCH4V TGCA 6 cut(s) 166, 432, 540, 895, 973, 1036
HpyF10VI GCNNNNNNNGC 5 cut(s) 342, 898, 1140, 1265, 1359
HpyF3I CTNAG 5 cut(s) 172, 216, 348, 627, 1356
HpySE526I ACGT 2 cut(s) 610, 668
HspAI GCGC 2 cut(s) 184, 345
Ksp22I TGATCA 1 cut(s) 1246
Kzo9I GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
LmnI GCTCC 4 cut(s) 61, 80, 524, 633
Lsp1109I GCAGC 6 cut(s) 351, 648, 814, 879, 1210, 1325
LweI GCATC 3 cut(s) 506, 1285, 1355
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 4 cut(s) 18, 60, 941, 1350
MaeII ACGT 2 cut(s) 610, 668
MaeIII GTNAC 5 cut(s) 406, 691, 734, 1020, 1208
MalI GATC 7 cut(s) 27, 372, 467, 643, 677, 872, 1248
MboI GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
MboII GAAGA 6 cut(s) 60, 315, 779, 792, 898, 1148
MfeI CAATTG 1 cut(s) 968
MflI RGATCY 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 2 cut(s) 910, 968
MluNI TGGCCA 1 cut(s) 1031
MlyI GAGTC 2 cut(s) 479, 719
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 1031
MroXI GAANNNNTTC 1 cut(s) 799
MscI TGGCCA 1 cut(s) 1031
MslI CAYNNNNRTG 6 cut(s) 404, 479, 570, 628, 1082, 1178
Msp20I TGGCCA 1 cut(s) 1031
MspA1I CMGCKG 2 cut(s) 342, 1223
MspI CCGG 4 cut(s) 241, 1140, 1151, 1203
MspR9I CCNGG 6 cut(s) 229, 241, 242, 364, 486, 1140
MunI CAATTG 1 cut(s) 968
Mva1269I GAATGC 2 cut(s) 1143, 1169
MvaI CCWGG 3 cut(s) 229, 364, 486
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 5 cut(s) 342, 898, 1140, 1265, 1359
NciI CCSGG 3 cut(s) 241, 242, 1140
NcoI CCATGG 2 cut(s) 1179, 1290
NdeII GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
NlaIV GGNNCC 7 cut(s) 253, 426, 437, 547, 556, 906, 1201
NmuCI GTSAC 3 cut(s) 406, 734, 1208
NspI RCATGY 3 cut(s) 692, 1009, 1272
OliI CACNNNNGTG 2 cut(s) 404, 628
PaeI GCATGC 1 cut(s) 1272
PaeR7I CTCGAG 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 61
PciI ACATGT 1 cut(s) 688
PctI GAATGC 2 cut(s) 1143, 1169
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 3 cut(s) 260, 320, 533
PleI GAGTC 2 cut(s) 478, 719
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 2 cut(s) 478, 719
Ppu21I YACGTR 1 cut(s) 611
PscI ACATGT 1 cut(s) 688
Psp6I CCWGG 3 cut(s) 227, 362, 484
PspCI CACGTG 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 3 cut(s) 227, 362, 484
PspN4I GGNNCC 7 cut(s) 253, 426, 437, 547, 556, 906, 1201
PspPI GGNCC 2 cut(s) 176, 904
PspXI VCTCGAGB 1 cut(s) 525
PsrI GAACNNNNNNTAC 2 cut(s) 1313, 1345
PstI CTGCAG 1 cut(s) 897
PstNI CAGNNNCTG 1 cut(s) 901
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 1223
RsaI GTAC 2 cut(s) 221, 790
RsaNI GTAC 2 cut(s) 220, 789
RseI CAYNNNNRTG 6 cut(s) 404, 479, 570, 628, 1082, 1178
Sau3AI GATC 7 cut(s) 25, 370, 465, 641, 675, 870, 1246
Sau96I GGNCC 2 cut(s) 176, 904
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 2 cut(s) 479, 719
ScrFI CCNGG 6 cut(s) 229, 241, 242, 364, 486, 1140
SexAI ACCWGGT 1 cut(s) 362
SfaNI GCATC 3 cut(s) 506, 1285, 1355
SfcI CTRYAG 3 cut(s) 99, 384, 893
Sfr274I CTCGAG 1 cut(s) 525
SgrAI CRCCGGYG 1 cut(s) 1202
SinI GGWCC 2 cut(s) 176, 904
SlaI CTCGAG 1 cut(s) 525
SmaI CCCGGG 1 cut(s) 242
SmiMI CAYNNNNRTG 6 cut(s) 404, 479, 570, 628, 1082, 1178
SmlI CTYRAG 2 cut(s) 305, 525
SmoI CTYRAG 2 cut(s) 305, 525
SphI GCATGC 1 cut(s) 1272
Sse9I AATT 2 cut(s) 910, 968
SspI AATATT 1 cut(s) 959
SspMI CTAG 4 cut(s) 18, 60, 941, 1350
StyD4I CCNGG 6 cut(s) 227, 239, 240, 362, 484, 1138
StyI CCWWGG 3 cut(s) 59, 1179, 1290
TaaI ACNGT 3 cut(s) 380, 406, 740
TaiI ACGT 2 cut(s) 613, 671
TaqI TCGA 5 cut(s) 373, 468, 526, 678, 803
TasI AATT 2 cut(s) 910, 968
TatI WGTACW 2 cut(s) 219, 788
TauI GCSGC 8 cut(s) 339, 345, 560, 833, 1064, 1067, 1137, 1187
TfiI GAWTC 3 cut(s) 260, 320, 533
TscAI CASTG 3 cut(s) 409, 547, 556
TseFI GTSAC 3 cut(s) 406, 734, 1208
TseI GCWGC 6 cut(s) 339, 636, 827, 892, 1223, 1313
Tsp45I GTSAC 3 cut(s) 406, 734, 1208
TspDTI ATGAA 7 cut(s) 48, 780, 827, 899, 1016, 1136, 1162
TspGWI ACGGA 1 cut(s) 718
TspMI CCCGGG 1 cut(s) 240
TspRI CASTG 3 cut(s) 409, 547, 556
VpaK11BI GGWCC 2 cut(s) 176, 904
XapI RAATTY 1 cut(s) 910
XceI RCATGY 3 cut(s) 692, 1009, 1272
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 525
XmaI CCCGGG 1 cut(s) 240
XmaJI CCTAGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 742
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 4 cut(s) 18, 60, 941, 1350
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.