AT4G00350

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
151849 .. 154178
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00350.1

Sequence Viewer

Length: 1629 bp
ATGGAGATCCCGGTTCGAGAGGAGAGAAGATCCTCCTCATCCTCTGCCGGACCATTACAACAAACCATCTCCTTAGCAGCTGACGACGCCATCGATAGCGGTCCATCCTCTCCGCTTGTCGTCAAAGTCTCTGTCTTCGAAACAGAGCATGAGACGACCAAGCTTATCCACGCGCCGTCAACTCTGCTCGGTGAAACCACCGGAGACGCTGATTTTCCTCCCATTCAAAGCTTTAGAGATGCTAAACTTGTTTGTGTGGTTGAAACGTCTAAGCTTTGGGAAATAGCTGCACCTATAGCTTTCAACATTCTTTGTAATTACGGTGTTAACTCCTTCACAAGCATCTTCGTTGGCCATATCGGCGATCTTGAGCTTTCTGCCGTCGCCATCGCTCTCTCCGTCGTCTCTAATTTCTCCTTTGGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAAACGTTATGTGGACAAGCGTTTGGAGCGGGACAAATGGATATGTTAGGTGTTTATATGCAGCGTTCTTGGCTTATCCTCCTCGGAACTTCCGTCTGCTTGCTTCCTCTCTACATCTACGCAACTCCACTTCTCATTTTACTCGGCCAAGAACCCGAAATCGCAGAGATCTCTGGCAAATTCACTACACAAATCATCCCTCAAATGTTTGCGCTCGCTATCAACTTCCCGACTCAGAAGTTTCTCCAGTCACAGAGCAAAGTAGGGATCATGGCATGGATCGGTTTCTTCGCTTTGACCCTTCACATTTTCATCCTCTACCTCTTTATAAACGTTTTCAAGTGGGGGCTAAACGGTGCAGCGGCTGCATTTGATGTCTCGGCTTGGGGAATCGCGATCGCGCAGGTTGTTTATGTTGTAGGGTGGTGTAAAGACGGTTGGAAAGGGCTGTCTTGGTTAGCGTTTCAAGACGTTTGGCCGTTTTTGAAACTGTCGTTTGCGTCTGCGGTTATGCTTTGTCTAGAGATTTGGTACTTCATGACGATCATTGTCTTAACTGGACATCTTGAAGACCCTGTCATAGCCGTTGGATCTCTCTCAATCTGTATGAACATTAATGGATGGGAAGGAATGTTGTTCATAGGAATCAATGCAGCTATAAGTGTTAGGGTGTCGAATGAGCTAGGATCGGGACATCCACGAGCTGCGAAATACTCCGTGATCGTAACGGTGATAGAGTCTCTCGTCATTGGAGTAGTGTGTGCAATTGTAATTCTGATAACACGAGATGACTTTGCTGTGATTTTTACGGAGAGTGAAGAGATGAGAAAGGCGGTAGCTGATCTTGCGTACCTGCTCGGTATAACGATGATTCTCAACAGTTTACAACCAGTTATATCAGGAGTTGCAGTAGGAGGAGGATGGCAAGCACCGGTGGCTTATATAAACTTGTTTTGTTACTACGCTTTTGGATTACCTCTAGGGTTTTTGTTAGGTTATAAAACAAGCCTTGGCGTACAGGGGATATGGATTGGTATGATATGTGGGACTAGTCTTCAGACTCTCATACTTTTGTACATGATCTACATAACCAATTGGAACAAAGAGGTGGAACAAGCTTCGGAGAGAATGAAACAATGGGGAGCTGGATATGAGAAATTAGAAAAAATAGCAACTTAA

Protein Analysis

542

Amino Acids

59.04

Weight (kDa)

4.93

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 98 - 258 1.4e-30 MatE
MatE PF01554 318 - 480 3.2e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 779, 1449
Acc36I ACCTGC 2 cut(s) 844, 1311
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 3 cut(s) 173, 845, 851
AciI CCGC 6 cut(s) 99, 113, 479, 812, 956, 1283
AclI AACGTT 2 cut(s) 455, 783
AclWI GGATC 5 cut(s) 24, 725, 737, 1048, 1144
AcoI YGGCCR 3 cut(s) 352, 595, 926
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 1490
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 4 cut(s) 983, 1301, 1467, 1526
AgeI ACCGGT 1 cut(s) 1381
AgsI TTSAA 7 cut(s) 227, 263, 304, 790, 917, 937, 1019
AhlI ACTAGT 1 cut(s) 1499
Alw26I GTCTC 6 cut(s) 133, 146, 198, 409, 832, 1194
AlwI GGATC 5 cut(s) 24, 725, 737, 1048, 1144
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 3 cut(s) 352, 595, 926
ApeKI GCWGC 7 cut(s) 77, 287, 511, 809, 815, 1103, 1154
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AseI ATTAAT 1 cut(s) 1065
AsiGI ACCGGT 1 cut(s) 1381
AsiSI GCGATCGC 1 cut(s) 849
AspLEI GCGC 3 cut(s) 175, 664, 853
AspS9I GGNCC 2 cut(s) 50, 101
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 203, 1192
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 2 cut(s) 50, 101
BalI TGGCCA 1 cut(s) 354
BauI CACGAG 2 cut(s) 1149, 1233
BbsI GAAGAC 3 cut(s) 127, 1026, 1496
BbvI GCAGC 7 cut(s) 89, 274, 523, 802, 821, 1115, 1141
BccI CCATC 6 cut(s) 74, 98, 112, 395, 1065, 1365
BceAI ACGGC 4 cut(s) 160, 365, 913, 1019
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 6 cut(s) 133, 146, 198, 409, 832, 1194
BcuI ACTAGT 1 cut(s) 1499
BfaI CTAG 4 cut(s) 971, 1133, 1430, 1500
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 2 cut(s) 844, 1311
BglI GCCNNNNNGGC 1 cut(s) 360
BglII AGATCT 1 cut(s) 618
BisI GCNGC 8 cut(s) 78, 288, 512, 810, 813, 816, 1104, 1155
BlsI GCNGC 8 cut(s) 79, 289, 513, 811, 814, 817, 1105, 1156
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 50, 101
BmgT120I GGNCC 2 cut(s) 50, 101
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 229, 351
BpiI GAAGAC 3 cut(s) 127, 1026, 1496
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 532, 1459
BsaWI WCCGGW 2 cut(s) 200, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 1344, 1374
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 3 cut(s) 697, 1012, 1340
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 532, 1459
BseGI GGATG 7 cut(s) 38, 104, 645, 762, 1076, 1144, 1376
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 3 cut(s) 697, 1012, 1340
BseRI GAGGAG 4 cut(s) 25, 35, 521, 1380
BseXI GCAGC 7 cut(s) 89, 274, 523, 802, 821, 1115, 1141
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 273, 828
Bsh1236I CGCG 3 cut(s) 173, 845, 851
Bsh1285I CGRYCG 1 cut(s) 849
BshFI GGCC 3 cut(s) 354, 597, 928
BshTI ACCGGT 1 cut(s) 1381
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 849
BsiSI CCGG 4 cut(s) 11, 48, 201, 1382
BslFI GGGAC 3 cut(s) 495, 1155, 1510
BsmAI GTCTC 6 cut(s) 133, 146, 198, 409, 832, 1194
BsmBI CGTCTC 3 cut(s) 146, 198, 409
BsmFI GGGAC 3 cut(s) 495, 1155, 1510
BsnI GGCC 3 cut(s) 354, 597, 928
Bsp119I TTCGAA 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 1524
Bsp68I TCGCGA 1 cut(s) 845
BspACI CCGC 6 cut(s) 99, 113, 479, 812, 956, 1283
BspANI GGCC 3 cut(s) 354, 597, 928
BspCNI CTCAG 1 cut(s) 697
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 3 cut(s) 173, 845, 851
BspHI TCATGA 1 cut(s) 987
BspMI ACCTGC 2 cut(s) 844, 1311
BspPI GGATC 5 cut(s) 24, 725, 737, 1048, 1144
BspT104I TTCGAA 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 479
BsrFI RCCGGY 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 1524
BsrI ACTGG 3 cut(s) 697, 1012, 1340
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 2 cut(s) 532, 1459
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 2 cut(s) 1149, 1233
BssT1I CCWWGG 1 cut(s) 1459
Bst2BI CACGAG 2 cut(s) 1149, 1233
Bst4CI ACNGT 6 cut(s) 323, 806, 887, 942, 1180, 1331
Bst6I CTCTTC 1 cut(s) 1263
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 1524
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 551, 666, 1377
BstDEI CTNAG 3 cut(s) 73, 270, 684
BstF5I GGATG 7 cut(s) 38, 104, 645, 762, 1076, 1144, 1376
BstFNI CGCG 3 cut(s) 173, 845, 851
BstHHI GCGC 3 cut(s) 175, 664, 853
BstMAI GTCTC 6 cut(s) 133, 146, 198, 409, 832, 1194
BstMCI CGRYCG 1 cut(s) 849
BstMWI GCNNNNNNNGC 8 cut(s) 86, 296, 360, 476, 520, 815, 1295, 1385
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 3 cut(s) 173, 845, 851
BstV1I GCAGC 7 cut(s) 89, 274, 523, 802, 821, 1115, 1141
BstV2I GAAGAC 3 cut(s) 127, 1026, 1496
BstX2I RGATCY 4 cut(s) 6, 29, 618, 1040
BstYI RGATCY 4 cut(s) 6, 29, 618, 1040
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 3 cut(s) 354, 597, 928
BsuTUI ATCGAT 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 7 cut(s) 38, 104, 645, 762, 1076, 1144, 1376
BtuMI TCGCGA 1 cut(s) 845
BveI ACCTGC 2 cut(s) 844, 1311
Cac8I GCNNGC 3 cut(s) 551, 666, 1377
CaiI CAGNNNCTG 1 cut(s) 815
CciI TCATGA 1 cut(s) 987
CfoI GCGC 3 cut(s) 175, 664, 853
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 2 cut(s) 50, 101
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 3 cut(s) 95, 215, 939
Csp6I GTAC 4 cut(s) 982, 1300, 1466, 1525
CspAI ACCGGT 1 cut(s) 1381
CviAII CATG 5 cut(s) 149, 721, 726, 988, 1528
CviQI GTAC 4 cut(s) 982, 1300, 1466, 1525
DdeI CTNAG 3 cut(s) 73, 270, 684
EaeI YGGCCR 3 cut(s) 352, 595, 926
Eam1104I CTCTTC 1 cut(s) 1263
EarI CTCTTC 1 cut(s) 1263
Eco130I CCWWGG 1 cut(s) 1459
Eco47I GGWCC 2 cut(s) 50, 101
Eco57I CTGAAG 1 cut(s) 1490
EcoT14I CCWWGG 1 cut(s) 1459
ErhI CCWWGG 1 cut(s) 1459
Esp3I CGTCTC 3 cut(s) 146, 198, 409
FaeI CATG 5 cut(s) 152, 724, 729, 991, 1531
FaqI GGGAC 3 cut(s) 495, 1155, 1510
FatI CATG 5 cut(s) 148, 720, 725, 987, 1527
FauI CCCGC 1 cut(s) 472
Fnu4HI GCNGC 8 cut(s) 78, 288, 512, 810, 813, 816, 1104, 1155
FokI GGATG 7 cut(s) 25, 91, 632, 749, 1083, 1131, 1383
Fsp4HI GCNGC 8 cut(s) 78, 288, 512, 810, 813, 816, 1104, 1155
FspBI CTAG 4 cut(s) 971, 1133, 1430, 1500
GlaI GCGC 3 cut(s) 174, 663, 852
GluI GCNGC 8 cut(s) 78, 288, 512, 810, 813, 816, 1104, 1155
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 354, 597, 928
HapII CCGG 4 cut(s) 11, 48, 201, 1382
HgaI GACGC 3 cut(s) 95, 215, 939
HhaI GCGC 3 cut(s) 175, 664, 853
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 5 cut(s) 152, 724, 729, 991, 1531
Hin6I GCGC 3 cut(s) 173, 662, 851
HinP1I GCGC 3 cut(s) 173, 662, 851
HincII GTYRAC 2 cut(s) 180, 328
HindII GTYRAC 2 cut(s) 180, 328
HindIII AAGCTT 4 cut(s) 161, 229, 272, 1566
HinfI GANTC 6 cut(s) 682, 840, 1095, 1187, 1321, 1510
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 4 cut(s) 11, 48, 201, 1382
HphI GGTGA 2 cut(s) 203, 1192
Hpy166II GTNNAC 4 cut(s) 180, 328, 464, 1334
Hpy188I TCNGA 5 cut(s) 536, 687, 1227, 1509, 1573
Hpy8I GTNNAC 4 cut(s) 180, 328, 464, 1334
Hpy99I CGWCG 3 cut(s) 89, 386, 404
HpyAV CCTTC 3 cut(s) 343, 761, 1070
HpyCH4III ACNGT 6 cut(s) 323, 806, 887, 942, 1180, 1331
HpyCH4IV ACGT 4 cut(s) 266, 455, 783, 921
HpyCH4V TGCA 7 cut(s) 290, 511, 809, 818, 1103, 1214, 1358
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 296, 360, 476, 520, 815, 1295, 1385
HpyF3I CTNAG 3 cut(s) 73, 270, 684
HpySE526I ACGT 4 cut(s) 266, 455, 783, 921
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 152, 724, 729, 991, 1531
HspAI GCGC 3 cut(s) 173, 662, 851
KspAI GTTAAC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 476, 1592
Lsp1109I GCAGC 7 cut(s) 89, 274, 523, 802, 821, 1115, 1141
LweI GCATC 2 cut(s) 229, 351
MaeI CTAG 4 cut(s) 971, 1133, 1430, 1500
MaeII ACGT 4 cut(s) 266, 455, 783, 921
MaeIII GTNAC 3 cut(s) 699, 1174, 1406
MbiI CCGCTC 1 cut(s) 479
MboII GAAGA 7 cut(s) 39, 127, 337, 730, 1031, 1280, 1496
MfeI CAATTG 2 cut(s) 1215, 1543
MflI RGATCY 4 cut(s) 6, 29, 618, 1040
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 7 cut(s) 316, 409, 629, 1215, 1221, 1543, 1607
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 3 cut(s) 676, 1196, 1504
MmeI TCCRAC 3 cut(s) 429, 869, 1018
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 4 cut(s) 327, 1004, 1065, 1627
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 80, 812
MspI CCGG 4 cut(s) 11, 48, 201, 1382
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 2 cut(s) 1215, 1543
MvnI CGCG 3 cut(s) 173, 845, 851
MwoI GCNNNNNNNGC 8 cut(s) 86, 296, 360, 476, 520, 815, 1295, 1385
NciI CCSGG 1 cut(s) 11
NlaIII CATG 5 cut(s) 152, 724, 729, 991, 1531
NmeAIII GCCGAG 2 cut(s) 573, 809
NmuCI GTSAC 1 cut(s) 699
NruI TCGCGA 1 cut(s) 845
NspV TTCGAA 1 cut(s) 138
PagI TCATGA 1 cut(s) 987
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 396, 540
PfeI GAWTC 3 cut(s) 840, 1095, 1321
PflFI GACNNNGTC 1 cut(s) 1025
PinAI ACCGGT 1 cut(s) 1381
PkrI GCNGC 8 cut(s) 79, 289, 513, 811, 814, 817, 1105, 1156
Ple19I CGATCG 1 cut(s) 849
PleI GAGTC 3 cut(s) 676, 1195, 1504
PpsI GAGTC 3 cut(s) 676, 1195, 1504
PshBI ATTAAT 1 cut(s) 1065
PsiI TTATAA 2 cut(s) 779, 1449
Psp1406I AACGTT 2 cut(s) 455, 783
PspFI CCCAGC 1 cut(s) 430
PspPI GGNCC 2 cut(s) 50, 101
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 4 cut(s) 6, 29, 618, 1040
PsyI GACNNNGTC 1 cut(s) 1025
PvuI CGATCG 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 80
RgaI GCGATCGC 1 cut(s) 849
RruI TCGCGA 1 cut(s) 845
RsaI GTAC 4 cut(s) 983, 1301, 1467, 1526
RsaNI GTAC 4 cut(s) 982, 1300, 1466, 1525
SaqAI TTAA 4 cut(s) 327, 1004, 1065, 1627
SatI GCNGC 8 cut(s) 78, 288, 512, 810, 813, 816, 1104, 1155
Sau96I GGNCC 2 cut(s) 50, 101
SchI GAGTC 3 cut(s) 676, 1196, 1504
ScrFI CCNGG 1 cut(s) 11
SfaAI GCGATCGC 1 cut(s) 849
SfaNI GCATC 2 cut(s) 229, 351
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 138
SgfI GCGATCGC 1 cut(s) 849
SgrAI CRCCGGYG 1 cut(s) 1381
SinI GGWCC 2 cut(s) 50, 101
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 1499
Sse9I AATT 7 cut(s) 316, 409, 629, 1215, 1221, 1543, 1607
SsiI CCGC 6 cut(s) 99, 113, 479, 812, 956, 1283
SspMI CTAG 4 cut(s) 971, 1133, 1430, 1500
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 1459
TaaI ACNGT 6 cut(s) 323, 806, 887, 942, 1180, 1331
TaiI ACGT 4 cut(s) 269, 458, 786, 924
TaqI TCGA 4 cut(s) 16, 93, 138, 1124
TasI AATT 7 cut(s) 316, 409, 629, 1215, 1221, 1543, 1607
TatI WGTACW 1 cut(s) 1524
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 3 cut(s) 840, 1095, 1321
Tru1I TTAA 4 cut(s) 327, 1004, 1065, 1627
Tru9I TTAA 4 cut(s) 327, 1004, 1065, 1627
TseFI GTSAC 1 cut(s) 699
TseI GCWGC 7 cut(s) 77, 287, 511, 809, 815, 1103, 1154
Tsp45I GTSAC 1 cut(s) 699
TspDTI ATGAA 5 cut(s) 751, 976, 1073, 1078, 1595
TspGWI ACGGA 4 cut(s) 388, 532, 1156, 1274
Tth111I GACNNNGTC 1 cut(s) 1025
VpaK11BI GGWCC 2 cut(s) 50, 101
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 1 cut(s) 629
XbaI TCTAGA 1 cut(s) 970
XspI CTAG 4 cut(s) 971, 1133, 1430, 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.