MD01G1066100.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
17008444 .. 17011654
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1066100.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGATTGATGGAGTGGATGACGCAGTCTCATCCCTTGAACCTGCAGAACTCCACCATGCTCCTCCCGCGTTCATTGGGTCCAGTGACGGAGATTATCCGGTAATTCACACCTTCCAGGATGCCAAGAGCATATGTTTTGTAGAGACCACAAAGCTTTGGTCAATTGCAGGGCCAATTGCCTTTAACATATTGTGCAACTACGGTGTCAACTCCTTCACAAACATCTTTGTTGGGCATATAGGAAATGTGGAGCTCTCTGCCGTTGCAATTTCTCTCTCTGTCATTTCCAATTTTTCGTTTGGCTTCCTGCTTGGTATGGCAAGTGCACTTGAAACACTATGTGGGCAGGCATTTGGTGCTGGGCAAGTAGACATGCTAGGGGTGTACATGCAGCGCTCGTGGATAATCCTTTTCGCTGCCTGCATTGCTATACTACCACTTTACATCTACTCCGCGCCAGTCCTAAAACTCTTAGGCCAAGAGGATGACATTGCAGACCTAGCCGGGAAATTCTCCATCCAAACCATCCCTCAAATGTTTTCCCTTGCCATCAACTTCCCAACTCAGAAGTTCTTGCAGGCACAGAGCAAGGTTGGAGTTCTTGCATGGATTGGTTTCATCTCTCTGATAGCACACATAGGAATCCTTTTTCTCTTCATAAAAGTTTTCGGGTGGGGAACTGGCGGTGCCGCTGCAGCGTATGATATCTCAGCCTGGGGGATGGCATTGGCTCAGGTGGTTTATATAGTCGGTTGGTGTACTGACGGCTGGAAGGGGTTGTCATGGCTGGCCTTCAAGGAATTGTGGTCTTTTGCAAAACTCTCTATTGCTTCAGCTGTCATGCTTTGCTTGGAGATTTGGTATTTCATGACCATAATTGTTCTCACTGGACACCTTGACGATCCTGTTATTGCAGTTGGCTCCCTTTCAATCTGCATGAATGTGAATGGATGGGAAGGCATGTTGTTTATTGGGATCAATGCAGCAATAAGCGTTCGTGTCTCCAATGAGCTTGGATCAGCACATCCTAGAGCTGCAAAATACTCAGTCATTATCACCATCCTTGAGTCTCTCCTCATTGGGATGATTTTTGCACTGGTTATCTTGGCAGCCAAGGATCATTTTGCCATCATCTTTACTGAAAGCAAAGAGATGCAACAAGCCGTCTCTCGTTTAGCCTTCCTACTCAGTGTTACAATGCTCCTCAATAGTGTTCAACCAGTTATATCTGGTGTTGCTGTTGGAGGAGGTTGGCAAGCTTTGGTGGCTTACATAAATTTGTTTTGTTATTATATTGTTGGGCTACCTCTAGGGTTTCTTCTGGGTTACCGTACAAGTTTGAGAGTGGAGGGAATTTGGATTGGTATGATATTTGGGACATTATTGCAGACACTGATCCTCCTGTACATCGTTTACAATACTAATTGGAACAAAGAGGTAGAACAAGCCTCAGAAAGAATGCGGCAATGGACGGGAGAAGAACTAGGTGATCCGAAAAAATGGAGTGGTCAAGAAAATGGATTACAAACTCAAGCTATATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

55.86

Weight (kDa)

5.1

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 58 - 215 8.2e-30 MatE
MatE PF01554 278 - 440 2.2e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 686
AccI GTMKAC 1 cut(s) 369
AccII CGCG 2 cut(s) 68, 455
AciI CCGC 5 cut(s) 66, 453, 684, 690, 1462
AclWI GGATC 6 cut(s) 896, 983, 1024, 1125, 1390, 1484
AcsI RAATTY 3 cut(s) 509, 1276, 1353
AcuI CTGAAG 1 cut(s) 816
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 4 cut(s) 386, 760, 1333, 1406
AfeI AGCGCT 1 cut(s) 395
AgsI TTSAA 5 cut(s) 38, 332, 796, 930, 1217
AjnI CCWGG 2 cut(s) 114, 713
AluBI AGCT 7 cut(s) 154, 253, 836, 1012, 1034, 1259, 1535
AluI AGCT 7 cut(s) 154, 253, 836, 1012, 1034, 1259, 1535
Alw21I GWGCWC 2 cut(s) 255, 328
Alw26I GTCTC 5 cut(s) 31, 137, 1006, 1074, 1171
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 6 cut(s) 896, 983, 1024, 1125, 1390, 1484
AlwNI CAGNNNCTG 1 cut(s) 1393
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 3 cut(s) 170, 475, 789
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 7 cut(s) 391, 416, 692, 695, 983, 1034, 1109
ApoI RAATTY 3 cut(s) 509, 1276, 1353
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 2 cut(s) 396, 457
AspS9I GGNCC 2 cut(s) 78, 170
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 1048, 1499
AvaII GGWCC 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 255, 328
BbvI GCAGC 7 cut(s) 403, 403, 679, 707, 995, 1021, 1121
BccI CCATC 8 cut(s) 2, 524, 533, 557, 715, 945, 1067, 1136
BceAI ACGGC 3 cut(s) 245, 781, 1148
BciT130I CCWGG 2 cut(s) 116, 715
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 5 cut(s) 31, 137, 1006, 1074, 1171
BfaI CTAG 5 cut(s) 377, 500, 1029, 1310, 1484
BfmI CTRYAG 2 cut(s) 42, 693
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 9 cut(s) 392, 417, 690, 693, 696, 984, 1035, 1110, 1463
BlsI GCNGC 9 cut(s) 393, 418, 691, 694, 697, 985, 1036, 1111, 1464
Bme1390I CCNGG 3 cut(s) 116, 505, 715
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 78, 170
BmiI GGNNCC 3 cut(s) 79, 688, 922
BmrFI CCNGG 3 cut(s) 116, 505, 715
BmsI GCATC 2 cut(s) 109, 1143
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 1085, 1515
BpuMI CCSGG 1 cut(s) 505
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 714, 1113
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 6 cut(s) 434, 464, 845, 875, 1383, 1413
Bse1I ACTGG 6 cut(s) 81, 458, 685, 892, 1101, 1220
Bse3DI GCAATG 3 cut(s) 423, 489, 1472
BseBI CCWGG 2 cut(s) 116, 715
BseDI CCNNGG 2 cut(s) 714, 1113
BseMI GCAATG 3 cut(s) 423, 489, 1472
BseMII CTCAG 6 cut(s) 578, 723, 746, 1059, 1201, 1464
BseNI ACTGG 6 cut(s) 81, 458, 685, 892, 1101, 1220
BseRI GAGGAG 4 cut(s) 51, 1064, 1193, 1260
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 7 cut(s) 403, 403, 679, 707, 995, 1021, 1121
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 68, 455
BshFI GGCC 3 cut(s) 172, 477, 791
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 255, 328
BsiSI CCGG 2 cut(s) 98, 504
BslFI GGGAC 1 cut(s) 1390
BsmAI GTCTC 5 cut(s) 31, 137, 1006, 1074, 1171
BsmBI CGTCTC 1 cut(s) 1171
BsmFI GGGAC 1 cut(s) 1390
BsmI GAATGC 1 cut(s) 1464
BsnI GGCC 3 cut(s) 172, 477, 791
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 255, 328
Bsp1407I TGTACA 2 cut(s) 384, 1404
Bsp143I GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
BspACI CCGC 5 cut(s) 66, 453, 684, 690, 1462
BspANI GGCC 3 cut(s) 172, 477, 791
BspCNI CTCAG 6 cut(s) 577, 722, 745, 1058, 1200, 1463
BspFNI CGCG 2 cut(s) 68, 455
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 3 cut(s) 79, 688, 922
BspMAI CTGCAG 2 cut(s) 46, 697
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 6 cut(s) 896, 983, 1024, 1125, 1390, 1484
BspT107I GGYRCC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 3 cut(s) 423, 489, 1472
BsrGI TGTACA 2 cut(s) 384, 1404
BsrI ACTGG 6 cut(s) 81, 458, 685, 892, 1101, 1220
BssECI CCNNGG 2 cut(s) 714, 1113
BssMI GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
BssSI CACGAG 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 1113
Bst2BI CACGAG 1 cut(s) 397
Bst2UI CCWGG 2 cut(s) 116, 715
Bst4CI ACNGT 2 cut(s) 203, 1331
Bst6I CTCTTC 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 356
BstAUI TGTACA 2 cut(s) 384, 1404
BstC8I GCNNGC 5 cut(s) 348, 421, 579, 789, 1257
BstDEI CTNAG 7 cut(s) 472, 564, 709, 732, 1045, 1187, 1450
BstEII GGTNACC 1 cut(s) 1325
BstFNI CGCG 2 cut(s) 68, 455
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 2 cut(s) 396, 457
BstKTI GATC 6 cut(s) 904, 978, 1019, 1120, 1398, 1492
BstMAI GTCTC 5 cut(s) 31, 137, 1006, 1074, 1171
BstMBI GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
BstMWI GCNNNNNNNGC 6 cut(s) 65, 356, 425, 500, 695, 1265
BstNI CCWGG 2 cut(s) 116, 715
BstNSI RCATGY 3 cut(s) 376, 391, 964
BstPI GGTNACC 1 cut(s) 1325
BstSCI CCNGG 3 cut(s) 114, 503, 713
BstSFI CTRYAG 2 cut(s) 42, 693
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 2 cut(s) 68, 455
BstV1I GCAGC 7 cut(s) 403, 403, 679, 707, 995, 1021, 1121
BsuRI GGCC 3 cut(s) 172, 477, 791
BtsIMutI CAGTG 5 cut(s) 88, 885, 1094, 1195, 1391
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 5 cut(s) 348, 421, 579, 789, 1257
CaiI CAGNNNCTG 1 cut(s) 1393
CciI TCATGA 1 cut(s) 867
CfoI GCGC 2 cut(s) 396, 457
Cfr13I GGNCC 2 cut(s) 78, 170
CseI GACGC 1 cut(s) 29
Csp6I GTAC 4 cut(s) 385, 759, 1332, 1405
CviAII CATG 9 cut(s) 56, 373, 388, 606, 783, 841, 868, 937, 961
CviQI GTAC 4 cut(s) 385, 759, 1332, 1405
DdeI CTNAG 7 cut(s) 472, 564, 709, 732, 1045, 1187, 1450
DpnI GATC 6 cut(s) 903, 977, 1018, 1119, 1397, 1491
DpnII GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
DraIII CACNNNGTG 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 1113
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 816
Eco91I GGTNACC 1 cut(s) 1325
EcoICRI GAGCTC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 1325
EcoRII CCWGG 2 cut(s) 114, 713
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 1113
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 1113
Esp3I CGTCTC 1 cut(s) 1171
FaeI CATG 9 cut(s) 59, 376, 391, 609, 786, 844, 871, 940, 964
FaqI GGGAC 1 cut(s) 1390
FatI CATG 9 cut(s) 55, 372, 387, 605, 782, 840, 867, 936, 960
FauI CCCGC 1 cut(s) 73
FauNDI CATATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 9 cut(s) 392, 417, 690, 693, 696, 984, 1035, 1110, 1463
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 9 cut(s) 392, 417, 690, 693, 696, 984, 1035, 1110, 1463
FspBI CTAG 5 cut(s) 377, 500, 1029, 1310, 1484
GlaI GCGC 2 cut(s) 395, 456
GluI GCNGC 9 cut(s) 392, 417, 690, 693, 696, 984, 1035, 1110, 1463
GsaI CCCAGC 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 172, 477, 791
HapII CCGG 2 cut(s) 98, 504
HgaI GACGC 1 cut(s) 29
HhaI GCGC 2 cut(s) 396, 457
Hin1II CATG 9 cut(s) 59, 376, 391, 609, 786, 844, 871, 940, 964
Hin6I GCGC 2 cut(s) 394, 455
HinP1I GCGC 2 cut(s) 394, 455
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 2 cut(s) 152, 1257
HinfI GANTC 2 cut(s) 642, 1067
HpaII CCGG 2 cut(s) 98, 504
HphI GGTGA 2 cut(s) 1048, 1499
Hpy166II GTNNAC 6 cut(s) 208, 326, 370, 385, 759, 1414
Hpy188I TCNGA 4 cut(s) 567, 627, 1453, 1494
Hpy188III TCNNGA 2 cut(s) 868, 1511
Hpy8I GTNNAC 6 cut(s) 208, 326, 370, 385, 759, 1414
HpyAV CCTTC 6 cut(s) 121, 223, 766, 802, 950, 1189
HpyCH4III ACNGT 2 cut(s) 203, 1331
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 356, 425, 500, 695, 1265
HpyF3I CTNAG 7 cut(s) 472, 564, 709, 732, 1045, 1187, 1450
Hsp92II CATG 9 cut(s) 59, 376, 391, 609, 786, 844, 871, 940, 964
HspAI GCGC 2 cut(s) 394, 455
Kzo9I GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
LmnI GCTCC 4 cut(s) 64, 250, 926, 1206
Lsp1109I GCAGC 7 cut(s) 403, 403, 679, 707, 995, 1021, 1121
LweI GCATC 2 cut(s) 109, 1143
MaeI CTAG 5 cut(s) 377, 500, 1029, 1310, 1484
MaeIII GTNAC 3 cut(s) 83, 1192, 1325
MalI GATC 6 cut(s) 903, 977, 1018, 1119, 1397, 1491
MboI GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
MboII GAAGA 3 cut(s) 646, 1310, 1490
MfeI CAATTG 2 cut(s) 162, 174
MhlI GDGCHC 2 cut(s) 255, 328
MlyI GAGTC 1 cut(s) 1076
MmeI TCCRAC 2 cut(s) 574, 1222
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 941, 1082
MspA1I CMGCKG 2 cut(s) 692, 836
MspI CCGG 2 cut(s) 98, 504
MspR9I CCNGG 3 cut(s) 116, 505, 715
MunI CAATTG 2 cut(s) 162, 174
Mva1269I GAATGC 1 cut(s) 1464
MvaI CCWGG 2 cut(s) 116, 715
MvnI CGCG 2 cut(s) 68, 455
MwoI GCNNNNNNNGC 6 cut(s) 65, 356, 425, 500, 695, 1265
NciI CCSGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 131
NdeII GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
NlaIII CATG 9 cut(s) 59, 376, 391, 609, 786, 844, 871, 940, 964
NlaIV GGNNCC 3 cut(s) 79, 688, 922
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 3 cut(s) 376, 391, 964
PagI TCATGA 1 cut(s) 867
PctI GAATGC 1 cut(s) 1464
PfeI GAWTC 1 cut(s) 642
PflFI GACNNNGTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 9 cut(s) 393, 418, 691, 694, 697, 985, 1036, 1111, 1464
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 114, 713
PspEI GGTNACC 1 cut(s) 1325
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 114, 713
PspN4I GGNNCC 3 cut(s) 79, 688, 922
PspPI GGNCC 2 cut(s) 78, 170
PstI CTGCAG 2 cut(s) 46, 697
PstNI CAGNNNCTG 1 cut(s) 1393
PsyI GACNNNGTC 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 4 cut(s) 386, 760, 1333, 1406
RsaNI GTAC 4 cut(s) 385, 759, 1332, 1405
RseI CAYNNNNRTG 2 cut(s) 941, 1082
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 9 cut(s) 392, 417, 690, 693, 696, 984, 1035, 1110, 1463
Sau3AI GATC 6 cut(s) 901, 975, 1016, 1117, 1395, 1489
Sau96I GGNCC 2 cut(s) 78, 170
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 3 cut(s) 116, 505, 715
SduI GDGCHC 2 cut(s) 255, 328
SfaNI GCATC 2 cut(s) 109, 1143
SfcI CTRYAG 2 cut(s) 42, 693
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 941, 1082
SmlI CTYRAG 2 cut(s) 1064, 1530
SmoI CTYRAG 2 cut(s) 1064, 1530
SsiI CCGC 5 cut(s) 66, 453, 684, 690, 1462
SspMI CTAG 5 cut(s) 377, 500, 1029, 1310, 1484
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 114, 503, 713
StyI CCWWGG 1 cut(s) 1113
TaaI ACNGT 2 cut(s) 203, 1331
TatI WGTACW 3 cut(s) 384, 758, 1404
TauI GCSGC 2 cut(s) 692, 1465
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 5 cut(s) 88, 892, 1101, 1195, 1398
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 7 cut(s) 391, 416, 692, 695, 983, 1034, 1109
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 5 cut(s) 61, 607, 646, 856, 953
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 5 cut(s) 88, 892, 1101, 1195, 1398
Tth111I GACNNNGTC 1 cut(s) 23
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 3 cut(s) 509, 1276, 1353
XceI RCATGY 3 cut(s) 376, 391, 964
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 5 cut(s) 377, 500, 1029, 1310, 1484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.