Rw1G024690

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
51078664 .. 51081302
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024690.1

Sequence Viewer

Length: 1578 bp
ATGAACAATGATGGAGTTTCAGACATTAAGATCAGTAGCCCATCCTCTCCTGGACGTTTACCAGACCAAGAAATAAAAAACCAAATGACTAATGATGCATTTTCAGCCATGGAAACTGCACCAGCTGATGTCCATGCCCCTACTGCAATAACCAGCTCCGGAGGAGATTATGAGCCAATAAGAAGCTTTGAAGATGCCAAGAACATATGCTTTGTGGAGAGCAAAAAGCTTTGGATGATTGCAGGGCCAATTATCTTTAACATGTTGTGCAACTATGGTATTAACTCATTCACAAACATCTTTGCTGGGCATATTGGCAATGTTGAGCTCTCTGCTATTGCAATATCTCTGTCTGTCATTGGAAATTTCTCTTTCGGCTTCCTGCTTGGTATGGCAAGTGCACTTGAAACACTATGTGGTCAGGCATTTGGTGCCGGGCAAGTAGGCATGCTAGGAGTTTACTTGCAACGCTCATGGATAATTCTGATTGTCACTTGCTTCTGTTTACTACCACTGTACATATACTCAGGGCCGGCCTTGAAACTCCTAGGGCAAGAAGACGACGTTGCAGACCTTGCCGGGAAGTTCACAATCCAAACTATCCCTCAGCTGTTTTCACTTGCCATTAATTTCCCAACACAGAAGTTCTTGCAGGCTCAGAGCAAGGTACGAGTACTAGCATGCATTGGCATTGCAACACTCCTAGTGCACATAGGACTCCTAAGTGTCTTCATCAAGGTTTTGGGGTGGGGAACTACCGGTGCAGCTGTGGCCTATAATGTCTCAGCCTGGGGTATGACACTGGCTCAGGTGGTATATGTAGTTGGTTGGTGCAGAGATGGCTGGAAGGGATTGTCATTGTTAGCTTTCAAGGAGTTATGGGCCTTTTTGAAACTCTCTATTGCTTCAGCTGTAATGCTTTGCCTAGAGATTTGGTATTTCATGACCATAATTGTTCTCACTGGACACCTTGAGAATCCTGTTATTGCTGTTGGCTCCCTTTCAATATGCATGAATGTGAATGGATGGGAAGGTGTATTTTTCATTGGGGTCAATGCAGCTATAAGCGTTCGAGTCTCCAATGAGCTTGGATCAGCACGTCCAAGAGCTGCAAAATACTCTGTCATTGTCACCATAGTTGAGTCTCTCATCATTGGGATTATTTTCGGGGGGATTATCCTGGCTGCTAAGGACCATTTTTCCATCATCTTTACCAGCAGCAAAGAGCTGCAACACGCGGTATCTCGTTTAGCAATCCTTCTTAGTGTGACAATGGTGCTTAATAGTGTCCAGCCGGTTATATCAGGTGTTGCTGTTGGAGGAGGGTGGCAAGCTTTGGTGGCTTACATAAACTTGTTTTGTTATTATGTTGTGGGGCTACCTCTTGGGTTTCTTCTTGGTTATCGAACAGGTTTGAGAGTGGAGGGAATTTGGCTTGGTATGATATTTGGGACATTCTTGCAGACACTGATCCTCTCCTGCATTGTTTATAAAACCAACTGGAACAAGGAGGTAGAACAAGCCTCAATAAGAATGGAAAAATGGACCGGAGAAGAACTAGTAGTAATGCATCATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

56.91

Weight (kDa)

6.45

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 83 - 240 1.2e-29 MatE
MatE PF01554 303 - 465 1.4e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1491
AccB1I GGYRCC 1 cut(s) 431
AccII CGCG 1 cut(s) 1238
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 1 cut(s) 1238
AclWI GGATC 2 cut(s) 1099, 1465
AcsI RAATTY 2 cut(s) 364, 1428
AcuI CTGAAG 1 cut(s) 891
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 3 cut(s) 518, 669, 675
AflIII ACRYGT 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 758
AgsI TTSAA 6 cut(s) 191, 407, 541, 871, 892, 1005
AhlI ACTAGT 1 cut(s) 1558
AjiI CACGTC 1 cut(s) 1100
AjnI CCWGG 3 cut(s) 49, 788, 1179
Alw21I GWGCWC 3 cut(s) 330, 403, 711
Alw26I GTCTC 3 cut(s) 787, 1081, 1149
Alw44I GTGCAC 2 cut(s) 399, 707
AlwI GGATC 2 cut(s) 1099, 1465
AlwNI CAGNNNCTG 1 cut(s) 1468
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 5 cut(s) 245, 530, 534, 771, 882
ApaLI GTGCAC 2 cut(s) 399, 707
ApeKI GCWGC 6 cut(s) 764, 1058, 1109, 1184, 1218, 1228
ApoI RAATTY 2 cut(s) 364, 1428
AseI ATTAAT 1 cut(s) 627
AsiGI ACCGGT 1 cut(s) 758
AspA2I CCTAGG 1 cut(s) 547
AspS9I GGNCC 5 cut(s) 245, 530, 882, 1192, 1545
AsuC2I CCSGG 2 cut(s) 436, 580
AsuHPI GGTGA 1 cut(s) 1123
AvaII GGWCC 2 cut(s) 1192, 1545
AvrII CCTAGG 1 cut(s) 547
BaeGI GKGCMC 2 cut(s) 403, 711
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 564, 721
Bbv12I GWGCWC 3 cut(s) 330, 403, 711
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 6 cut(s) 776, 1070, 1096, 1171, 1215, 1230
BccI CCATC 5 cut(s) 5, 49, 833, 1020, 1211
BciT130I CCWGG 3 cut(s) 51, 790, 1181
BcnI CCSGG 2 cut(s) 436, 580
BcoDI GTCTC 3 cut(s) 787, 1081, 1149
BcuI ACTAGT 1 cut(s) 1558
BfaI CTAG 6 cut(s) 452, 548, 677, 704, 926, 1559
BisI GCNGC 6 cut(s) 765, 1059, 1110, 1185, 1219, 1229
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 6 cut(s) 766, 1060, 1111, 1186, 1220, 1230
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 5 cut(s) 51, 436, 580, 790, 1181
Bme18I GGWCC 2 cut(s) 1192, 1545
BmgBI CACGTC 1 cut(s) 1100
BmgT120I GGNCC 5 cut(s) 245, 530, 882, 1192, 1545
BmiI GGNNCC 2 cut(s) 433, 997
BmrFI CCNGG 5 cut(s) 51, 436, 580, 790, 1181
BmsI GCATC 2 cut(s) 85, 184
BpiI GAAGAC 2 cut(s) 564, 721
Bpu10I CCTNAGC 3 cut(s) 606, 807, 1188
BpuEI CTTGAG 1 cut(s) 992
BpuMI CCSGG 2 cut(s) 436, 580
BsaJI CCNNGG 3 cut(s) 108, 547, 789
BsaWI WCCGGW 3 cut(s) 158, 758, 1547
Bse118I RCCGGY 3 cut(s) 532, 758, 1294
Bse1I ACTGG 3 cut(s) 807, 967, 1505
Bse3DI GCAATG 2 cut(s) 325, 690
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 3 cut(s) 51, 790, 1181
BseDI CCNNGG 3 cut(s) 108, 547, 789
BseGI GGATG 3 cut(s) 41, 240, 1031
BseMI GCAATG 2 cut(s) 325, 690
BseMII CTCAG 5 cut(s) 540, 620, 671, 798, 821
BseNI ACTGG 3 cut(s) 807, 967, 1505
BseRI GAGGAG 2 cut(s) 177, 1335
BseSI GKGCMC 2 cut(s) 403, 711
BseXI GCAGC 6 cut(s) 776, 1070, 1096, 1171, 1215, 1230
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 3 cut(s) 102, 783, 853
Bsh1236I CGCG 1 cut(s) 1238
BshFI GGCC 5 cut(s) 247, 532, 536, 773, 884
BshNI GGYRCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 758
BsiHKAI GWGCWC 3 cut(s) 330, 403, 711
BsiSI CCGG 7 cut(s) 159, 435, 533, 579, 759, 1295, 1548
BslFI GGGAC 1 cut(s) 1465
BsmAI GTCTC 3 cut(s) 787, 1081, 1149
BsmFI GGGAC 1 cut(s) 1465
BsnI GGCC 5 cut(s) 247, 532, 536, 773, 884
Bsp1286I GDGCHC 3 cut(s) 330, 403, 711
Bsp13I TCCGGA 1 cut(s) 158
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 3 cut(s) 30, 1091, 1470
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 1238
BspANI GGCC 5 cut(s) 247, 532, 536, 773, 884
BspCNI CTCAG 5 cut(s) 539, 619, 670, 797, 820
BspEI TCCGGA 1 cut(s) 158
BspFNI CGCG 1 cut(s) 1238
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 433, 997
BspPI GGATC 2 cut(s) 1099, 1465
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 325, 690
BsrFI RCCGGY 3 cut(s) 532, 758, 1294
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 807, 967, 1505
BssAI RCCGGY 3 cut(s) 532, 758, 1294
BssECI CCNNGG 3 cut(s) 108, 547, 789
BssMI GATC 3 cut(s) 30, 1091, 1470
BssT1I CCWWGG 2 cut(s) 108, 547
Bst2UI CCWGG 3 cut(s) 51, 790, 1181
Bst4CI ACNGT 1 cut(s) 516
BstAPI GCANNNNNTGC 2 cut(s) 431, 575
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 5 cut(s) 449, 534, 654, 682, 1332
BstDEI CTNAG 8 cut(s) 526, 606, 657, 722, 784, 807, 1188, 1262
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 3 cut(s) 41, 240, 1031
BstFNI CGCG 1 cut(s) 1238
BstKTI GATC 3 cut(s) 33, 1094, 1473
BstMAI GTCTC 3 cut(s) 787, 1081, 1149
BstMBI GATC 3 cut(s) 30, 1091, 1470
BstMWI GCNNNNNNNGC 7 cut(s) 104, 143, 431, 575, 770, 840, 1340
BstNI CCWGG 3 cut(s) 51, 790, 1181
BstNSI RCATGY 3 cut(s) 265, 451, 684
BstSCI CCNGG 5 cut(s) 49, 434, 578, 788, 1179
BstSLI GKGCMC 2 cut(s) 403, 711
BstUI CGCG 1 cut(s) 1238
BstV1I GCAGC 6 cut(s) 776, 1070, 1096, 1171, 1215, 1230
BstV2I GAAGAC 2 cut(s) 564, 721
BsuRI GGCC 5 cut(s) 247, 532, 536, 773, 884
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 1100
BtsCI GGATG 3 cut(s) 41, 240, 1031
BtsIMutI CAGTG 4 cut(s) 512, 800, 960, 1466
Cac8I GCNNGC 5 cut(s) 449, 534, 654, 682, 1332
CaiI CAGNNNCTG 1 cut(s) 1468
CciI TCATGA 1 cut(s) 942
Cfr10I RCCGGY 3 cut(s) 532, 758, 1294
Cfr13I GGNCC 5 cut(s) 245, 530, 882, 1192, 1545
Csp6I GTAC 3 cut(s) 517, 668, 674
CspAI ACCGGT 1 cut(s) 758
CviAII CATG 8 cut(s) 109, 134, 262, 448, 474, 681, 943, 1012
CviQI GTAC 3 cut(s) 517, 668, 674
DdeI CTNAG 8 cut(s) 526, 606, 657, 722, 784, 807, 1188, 1262
DpnI GATC 3 cut(s) 32, 1093, 1472
DpnII GATC 3 cut(s) 30, 1091, 1470
DraIII CACNNNGTG 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 108, 547
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 2 cut(s) 1192, 1545
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 49, 788, 1179
EcoT14I CCWWGG 2 cut(s) 108, 547
EcoT22I ATGCAT 4 cut(s) 100, 686, 1013, 1572
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 108, 547
FaeI CATG 8 cut(s) 112, 137, 265, 451, 477, 684, 946, 1015
FaqI GGGAC 1 cut(s) 1465
FatI CATG 8 cut(s) 108, 133, 261, 447, 473, 680, 942, 1011
FauNDI CATATG 1 cut(s) 206
Fnu4HI GCNGC 6 cut(s) 765, 1059, 1110, 1185, 1219, 1229
FokI GGATG 3 cut(s) 28, 247, 1038
FriOI GRGCYC 1 cut(s) 330
FseI GGCCGGCC 1 cut(s) 536
Fsp4HI GCNGC 6 cut(s) 765, 1059, 1110, 1185, 1219, 1229
FspBI CTAG 6 cut(s) 452, 548, 677, 704, 926, 1559
GluI GCNGC 6 cut(s) 765, 1059, 1110, 1185, 1219, 1229
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 5 cut(s) 247, 532, 536, 773, 884
HapII CCGG 7 cut(s) 159, 435, 533, 579, 759, 1295, 1548
Hin1II CATG 8 cut(s) 112, 137, 265, 451, 477, 684, 946, 1015
HindIII AAGCTT 3 cut(s) 184, 227, 1332
HinfI GANTC 4 cut(s) 717, 976, 1074, 1142
HpaII CCGG 7 cut(s) 159, 435, 533, 579, 759, 1295, 1548
HphI GGTGA 1 cut(s) 1123
Hpy166II GTNNAC 6 cut(s) 59, 401, 460, 506, 588, 709
Hpy188I TCNGA 3 cut(s) 22, 486, 660
Hpy188III TCNNGA 2 cut(s) 159, 943
Hpy8I GTNNAC 6 cut(s) 59, 401, 460, 506, 588, 709
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 3 cut(s) 841, 1025, 1268
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 3 cut(s) 55, 564, 1099
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 143, 431, 575, 770, 840, 1340
HpyF3I CTNAG 8 cut(s) 526, 606, 657, 722, 784, 807, 1188, 1262
HpySE526I ACGT 3 cut(s) 55, 564, 1099
Hsp92II CATG 8 cut(s) 112, 137, 265, 451, 477, 684, 946, 1015
Kpn2I TCCGGA 1 cut(s) 158
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
Kzo9I GATC 3 cut(s) 30, 1091, 1470
LmnI GCTCC 2 cut(s) 161, 1001
Lsp1109I GCAGC 6 cut(s) 776, 1070, 1096, 1171, 1215, 1230
LweI GCATC 2 cut(s) 85, 184
MaeI CTAG 6 cut(s) 452, 548, 677, 704, 926, 1559
MaeII ACGT 3 cut(s) 55, 564, 1099
MaeIII GTNAC 3 cut(s) 490, 1129, 1267
MalI GATC 3 cut(s) 32, 1093, 1472
MboI GATC 3 cut(s) 30, 1091, 1470
MboII GAAGA 5 cut(s) 203, 569, 721, 1385, 1565
MhlI GDGCHC 3 cut(s) 330, 403, 711
MluCI AATT 6 cut(s) 249, 364, 480, 628, 951, 1428
MlyI GAGTC 3 cut(s) 711, 1083, 1151
MmeI TCCRAC 1 cut(s) 1297
Mph1103I ATGCAT 4 cut(s) 100, 686, 1013, 1572
MroI TCCGGA 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 532
MseI TTAA 5 cut(s) 27, 258, 282, 627, 1281
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 4 cut(s) 125, 610, 767, 911
MspI CCGG 7 cut(s) 159, 435, 533, 579, 759, 1295, 1548
MspR9I CCNGG 5 cut(s) 51, 436, 580, 790, 1181
MvaI CCWGG 3 cut(s) 51, 790, 1181
MvnI CGCG 1 cut(s) 1238
MwoI GCNNNNNNNGC 7 cut(s) 104, 143, 431, 575, 770, 840, 1340
NaeI GCCGGC 1 cut(s) 534
NciI CCSGG 2 cut(s) 436, 580
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 206
NdeII GATC 3 cut(s) 30, 1091, 1470
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 8 cut(s) 112, 137, 265, 451, 477, 684, 946, 1015
NlaIV GGNNCC 2 cut(s) 433, 997
NmuCI GTSAC 3 cut(s) 490, 1129, 1267
NsiI ATGCAT 4 cut(s) 100, 686, 1013, 1572
NspI RCATGY 3 cut(s) 265, 451, 684
PaeI GCATGC 2 cut(s) 451, 684
PagI TCATGA 1 cut(s) 942
PciI ACATGT 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 976
PfoI TCCNGGA 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 758
PkrI GCNGC 6 cut(s) 766, 1060, 1111, 1186, 1220, 1230
PleI GAGTC 3 cut(s) 711, 1082, 1150
PpsI GAGTC 3 cut(s) 711, 1082, 1150
PscI ACATGT 1 cut(s) 261
PshBI ATTAAT 1 cut(s) 627
PsiI TTATAA 1 cut(s) 1491
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 3 cut(s) 49, 788, 1179
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 3 cut(s) 49, 788, 1179
PspN4I GGNNCC 2 cut(s) 433, 997
PspPI GGNCC 5 cut(s) 245, 530, 882, 1192, 1545
PstNI CAGNNNCTG 1 cut(s) 1468
PvuII CAGCTG 4 cut(s) 125, 610, 767, 911
RigI GGCCGGCC 1 cut(s) 536
RsaI GTAC 3 cut(s) 518, 669, 675
RsaNI GTAC 3 cut(s) 517, 668, 674
RseI CAYNNNNRTG 1 cut(s) 1016
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 5 cut(s) 27, 258, 282, 627, 1281
SatI GCNGC 6 cut(s) 765, 1059, 1110, 1185, 1219, 1229
Sau3AI GATC 3 cut(s) 30, 1091, 1470
Sau96I GGNCC 5 cut(s) 245, 530, 882, 1192, 1545
ScaI AGTACT 1 cut(s) 675
SchI GAGTC 3 cut(s) 711, 1083, 1151
ScrFI CCNGG 5 cut(s) 51, 436, 580, 790, 1181
SduI GDGCHC 3 cut(s) 330, 403, 711
SfaNI GCATC 2 cut(s) 85, 184
SinI GGWCC 2 cut(s) 1192, 1545
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
SpeI ACTAGT 1 cut(s) 1558
SphI GCATGC 2 cut(s) 451, 684
Sse9I AATT 6 cut(s) 249, 364, 480, 628, 951, 1428
SsiI CCGC 1 cut(s) 1238
SspMI CTAG 6 cut(s) 452, 548, 677, 704, 926, 1559
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 5 cut(s) 49, 434, 578, 788, 1179
StyI CCWWGG 2 cut(s) 108, 547
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 3 cut(s) 58, 567, 1102
TaqI TCGA 2 cut(s) 1072, 1405
TasI AATT 6 cut(s) 249, 364, 480, 628, 951, 1428
TatI WGTACW 2 cut(s) 516, 673
TfiI GAWTC 1 cut(s) 976
Tru1I TTAA 5 cut(s) 27, 258, 282, 627, 1281
Tru9I TTAA 5 cut(s) 27, 258, 282, 627, 1281
TscAI CASTG 4 cut(s) 519, 807, 967, 1473
TseFI GTSAC 3 cut(s) 490, 1129, 1267
TseI GCWGC 6 cut(s) 764, 1058, 1109, 1184, 1218, 1228
Tsp45I GTSAC 3 cut(s) 490, 1129, 1267
TspDTI ATGAA 5 cut(s) 17, 721, 931, 1028, 1033
TspRI CASTG 4 cut(s) 519, 807, 967, 1473
VneI GTGCAC 2 cut(s) 399, 707
VpaK11BI GGWCC 2 cut(s) 1192, 1545
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 2 cut(s) 364, 1428
XceI RCATGY 3 cut(s) 265, 451, 684
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 6 cut(s) 452, 548, 677, 704, 926, 1559
ZrmI AGTACT 1 cut(s) 675
Zsp2I ATGCAT 4 cut(s) 100, 686, 1013, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.