Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003191.1

Orthogroup ID

OG0005076

Physical Location & Seq

Genomic Coordinates Reverse (-)

50126 .. 52769

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003191.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atgaagattactagttcatccactcttggaacttcacctgataggaaacaaaccctggacagaaagattgatggagtttcagccatggaaagtatttcatatctccaccatgcccctacgacatttctcgggtctagagatggagattatccaccaaccagaagctttaaggatgccaaggacatatgttttgcagagaccgcaaagctttggaccattgcaggccccattgcctttaacttgttgtgctactatggtattaactcctccacagccatctttgttggacatatcggagacgtggagctctctgctgttgcaatctctctgaatgtcatcggaaatttctcttttggcttcctgtatggtatggcaagtgcactagaaacactatgtgggcaggcatttggtgcagggcaagtaggtctgctaggaatttacttgcaacgctcatggattataatgactattgcgtgctcgtgtttactgccaatttacatctacgcagcaccagtcctaaagcttcttggccaagacgagaacatcgcagatgtagccgggaaattatgtatccaaatcatccctcaaatgttttcaatggccatcaacttcccaacccaaaagttcttgcaggcacagagcaaagtttcatttctgtcactgtttggttttgcaactctcgtattacacataggactcctatgtgtcttcctcaaagttttcggttggggaatgagcagcgctactgcagcatttaacatctcatcctgggcgatgacattggctcaggtggtttatatagttggttggtgtagagatggctggaagggattgtcatggttagctttcaaggacttatggtcctttgcaaaactctctgtagcttcagctattatgctttgcctagagatttggtatttcatgaccatactagttatcactggccaccttgacaatgctgttattgctgttggctcccttgcaatatgcatgaatgtgaatggctgggaagcaatactgtttgttgggatcaatgttgctataagcgttcgggtctccaacgaacttggatcagcacatcctagagctgcagaatactctgtcattgtcgccatcaccgaggctctccttcttgggatttttttcggggtggttattatggctgcaaaggacaattttgccatcatctttaccaacaacaaagagatgcaacaagccgtgtctcgtatagctttcctccttagtattacaatgggaatttgggttggtatgatgtttgggacagttttgcagacactcatcctgttgtacatcctttataaaaccaactggatcaaggaggttgaacaagctacagaaagaattgaacagtggactgaagaagaactagtagaaattgatcaagaacacaggattggacaagacttgaaggtggatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

480

Amino Acids

52.75

Weight (kDa)

5.56

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00350
fragaria_vesca	FvH4_7g14750 FvH4_7g15820 FvH4_7g16700
malus_domestica	MD01G1066100.v1.1 MD07G1134500.v1.1
prunus_persica	Prupe.2G173200_v2.0.a1
pyrus_communis	pycom07g13180
rosa_chinensis	RchiOBHm_Chr1g0358621 RchiOBHm_Chr1g0359861
rosa_laevigata	RLG00000027848 RLG00000027940
rosa_multiflora	Rmu_sc0001609.1_g000022 Rmu_sc0003191.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297750
rosa_rugosa	Rorug01G0250800 Rorug01G0262900 Rorug01G0263000 Rorug01G0273300
rosa_samantha	Rh1AG264700 Rh1AG278200 Rh1AG287400 Rh1CG248400 Rh1CG261600 Rh1CG270500 Rh1DG259800 Rh1DG282100
rosa_wichuraiana	Rw1G023420 Rw1G024690 Rw1G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	461, 1320
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	3 cut(s)	1037, 1078, 1340
AcoI	YGGCCR	3 cut(s)	529, 600, 943
AcsI	RAATTY	3 cut(s)	343, 435, 1257
AcuI	CTGAAG	2 cut(s)	870, 1398
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	1310
AfeI	AGCGCT	1 cut(s)	742
AgsI	TTSAA	5 cut(s)	597, 850, 1346, 1367, 1429
AhdI	GACNNNNNGTC	1 cut(s)	859
AhlI	ACTAGT	3 cut(s)	11, 931, 1387
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	54, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	1398, 1430
Alw21I	GWGCWC	3 cut(s)	309, 382, 479
Alw26I	GTCTC	4 cut(s)	191, 291, 1060, 1227
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	3 cut(s)	1037, 1078, 1340
Ama87I	CYCGRG	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	742
AoxI	GGCC	4 cut(s)	223, 529, 600, 943
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	5 cut(s)	506, 738, 749, 1088, 1163
ApoI	RAATTY	3 cut(s)	343, 435, 1257
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	213, 224, 861
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	27, 1108
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	213, 861
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	3 cut(s)	531, 602, 945
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	3 cut(s)	309, 382, 479
BbvI	GCAGC	5 cut(s)	518, 750, 761, 1075, 1150
BccI	CCATC	7 cut(s)	65, 134, 284, 611, 812, 1121, 1190
BceAI	ACGGC	1 cut(s)	1202
BciT130I	CCWGG	2 cut(s)	56, 769
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	1399
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	4 cut(s)	191, 291, 1060, 1227
BcuI	ACTAGT	3 cut(s)	11, 931, 1387
BfaI	CTAG	8 cut(s)	12, 135, 383, 431, 905, 932, 1083, 1388
BfmI	CTRYAG	4 cut(s)	747, 879, 1089, 1353
BfoI	RGCGCY	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	5 cut(s)	507, 739, 750, 1089, 1164
BlsI	GCNGC	5 cut(s)	508, 740, 751, 1090, 1165
Bme1390I	CCNGG	3 cut(s)	56, 559, 769
Bme18I	GGWCC	2 cut(s)	213, 861
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	213, 224, 861
BmiI	GGNNCC	2 cut(s)	226, 976
BmrFI	CCNGG	3 cut(s)	56, 559, 769
BmsI	GCATC	2 cut(s)	163, 1197
BpiI	GAAGAC	1 cut(s)	700
Bpu10I	CCTNAGC	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	559
BsaI	GGTCTC	2 cut(s)	191, 1060
BsaJI	CCNNGG	5 cut(s)	54, 84, 177, 768, 1119
Bse1I	ACTGG	3 cut(s)	512, 946, 1334
Bse3DI	GCAATG	2 cut(s)	216, 228
BseBI	CCWGG	2 cut(s)	56, 769
BseDI	CCNNGG	5 cut(s)	54, 84, 177, 768, 1119
BseGI	GGATG	7 cut(s)	17, 178, 579, 764, 1078, 1299, 1311
BseMI	GCAATG	2 cut(s)	216, 228
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	3 cut(s)	512, 946, 1334
BseRI	GAGGAG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	5 cut(s)	518, 750, 761, 1075, 1150
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	4 cut(s)	225, 531, 602, 945
BsiHKAI	GWGCWC	3 cut(s)	309, 382, 479
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	1294
BsmAI	GTCTC	4 cut(s)	191, 291, 1060, 1227
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	1294
BsnI	GGCC	4 cut(s)	225, 531, 602, 945
Bso31I	GGTCTC	2 cut(s)	191, 1060
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	309, 382, 479
Bsp1407I	TGTACA	1 cut(s)	1308
Bsp143I	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	4 cut(s)	225, 531, 602, 945
BspCNI	CTCAG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	226, 976
BspMAI	CTGCAG	2 cut(s)	751, 1093
BspPI	GGATC	3 cut(s)	1037, 1078, 1340
BspTNI	GGTCTC	2 cut(s)	191, 1060
BsrDI	GCAATG	2 cut(s)	216, 228
BsrGI	TGTACA	1 cut(s)	1308
BsrI	ACTGG	3 cut(s)	512, 946, 1334
BssECI	CCNNGG	5 cut(s)	54, 84, 177, 768, 1119
BssMI	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
BssSI	CACGAG	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	84, 177
Bst2BI	CACGAG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	56, 769
Bst4CI	ACNGT	4 cut(s)	663, 1020, 1285, 1371
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	1308
BstC8I	GCNNGC	4 cut(s)	223, 402, 475, 633
BstDEI	CTNAG	2 cut(s)	786, 1241
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	7 cut(s)	17, 178, 579, 764, 1078, 1299, 1311
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	5 cut(s)	1032, 1073, 1335, 1402, 1438
BstMAI	GTCTC	4 cut(s)	191, 291, 1060, 1227
BstMBI	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 410, 554, 749, 965
BstNI	CCWGG	2 cut(s)	56, 769
BstSCI	CCNGG	3 cut(s)	54, 557, 767
BstSFI	CTRYAG	4 cut(s)	747, 879, 1089, 1353
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	5 cut(s)	518, 750, 761, 1075, 1150
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	1435
BstYI	RGATCY	1 cut(s)	1435
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	225, 531, 602, 945
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	2 cut(s)	529, 788
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	7 cut(s)	17, 178, 579, 764, 1078, 1299, 1311
BtsIMutI	CAGTG	3 cut(s)	659, 939, 1376
Cac8I	GCNNGC	4 cut(s)	223, 402, 475, 633
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	3 cut(s)	213, 224, 861
Csp6I	GTAC	1 cut(s)	1309
CviAII	CATG	6 cut(s)	85, 110, 453, 837, 922, 991
CviQI	GTAC	1 cut(s)	1309
DdeI	CTNAG	2 cut(s)	786, 1241
DpnI	GATC	5 cut(s)	1031, 1072, 1334, 1401, 1437
DpnII	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
DraIII	CACNNNGTG	1 cut(s)	395
DriI	GACNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	3 cut(s)	529, 600, 943
Eam1105I	GACNNNNNGTC	1 cut(s)	859
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	84, 177
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	191, 1060
Eco47I	GGWCC	2 cut(s)	213, 861
Eco47III	AGCGCT	1 cut(s)	742
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	870, 1398
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	54, 767
EcoT14I	CCWWGG	2 cut(s)	84, 177
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	84, 177
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	6 cut(s)	88, 113, 456, 840, 925, 994
FaqI	GGGAC	1 cut(s)	1294
FatI	CATG	6 cut(s)	84, 109, 452, 836, 921, 990
FauNDI	CATATG	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	1399
Fnu4HI	GCNGC	5 cut(s)	507, 739, 750, 1089, 1164
FokI	GGATG	7 cut(s)	4, 185, 566, 751, 1065, 1286, 1298
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	507, 739, 750, 1089, 1164
FspBI	CTAG	8 cut(s)	12, 135, 383, 431, 905, 932, 1083, 1388
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	5 cut(s)	507, 739, 750, 1089, 1164
GsaI	CCCAGC	1 cut(s)	1009
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	4 cut(s)	225, 531, 602, 945
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	6 cut(s)	88, 113, 456, 840, 925, 994
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HindIII	AAGCTT	3 cut(s)	163, 206, 521
HinfI	GANTC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	27, 1108
Hpy166II	GTNNAC	3 cut(s)	380, 485, 1374
Hpy188I	TCNGA	3 cut(s)	296, 330, 341
Hpy188III	TCNNGA	3 cut(s)	135, 922, 1403
Hpy8I	GTNNAC	3 cut(s)	380, 485, 1374
HpyAV	CCTTC	3 cut(s)	820, 1139, 1423
HpyCH4III	ACNGT	4 cut(s)	663, 1020, 1285, 1371
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 410, 554, 749, 965
HpyF3I	CTNAG	2 cut(s)	786, 1241
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	88, 113, 456, 840, 925, 994
HspAI	GCGC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	1399
Kzo9I	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
LmnI	GCTCC	2 cut(s)	304, 980
Lsp1109I	GCAGC	5 cut(s)	518, 750, 761, 1075, 1150
LweI	GCATC	2 cut(s)	163, 1197
MaeI	CTAG	8 cut(s)	12, 135, 383, 431, 905, 932, 1083, 1388
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	5 cut(s)	1031, 1072, 1334, 1401, 1437
MboI	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
MboII	GAAGA	4 cut(s)	16, 700, 1391, 1394
MflI	RGATCY	1 cut(s)	1435
MhlI	GDGCHC	3 cut(s)	309, 382, 479
MlsI	TGGCCA	3 cut(s)	531, 602, 945
MluCI	AATT	8 cut(s)	343, 435, 492, 563, 1174, 1257, 1362, 1395
MluNI	TGGCCA	3 cut(s)	531, 602, 945
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	265, 1083
MnlI	CCTC	6 cut(s)	277, 594, 722, 1114, 1247, 1333
Mox20I	TGGCCA	3 cut(s)	531, 602, 945
Mph1103I	ATGCAT	1 cut(s)	992
MscI	TGGCCA	3 cut(s)	531, 602, 945
MseI	TTAA	4 cut(s)	168, 237, 261, 756
MslI	CAYNNNNRTG	1 cut(s)	995
Msp20I	TGGCCA	3 cut(s)	531, 602, 945
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	3 cut(s)	56, 559, 769
MvaI	CCWGG	2 cut(s)	56, 769
MwoI	GCNNNNNNNGC	5 cut(s)	200, 410, 554, 749, 965
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
NlaIII	CATG	6 cut(s)	88, 113, 456, 840, 925, 994
NlaIV	GGNNCC	2 cut(s)	226, 976
NmuCI	GTSAC	1 cut(s)	657
NsiI	ATGCAT	1 cut(s)	992
PagI	TCATGA	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	1116
PkrI	GCNGC	5 cut(s)	508, 740, 751, 1090, 1165
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PsiI	TTATAA	2 cut(s)	461, 1320
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	54, 767
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	2 cut(s)	54, 767
PspN4I	GGNNCC	2 cut(s)	226, 976
PspPI	GGNCC	3 cut(s)	213, 224, 861
PstI	CTGCAG	2 cut(s)	751, 1093
PsuI	RGATCY	1 cut(s)	1435
RsaI	GTAC	1 cut(s)	1310
RsaNI	GTAC	1 cut(s)	1309
RseI	CAYNNNNRTG	1 cut(s)	995
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	168, 237, 261, 756
SatI	GCNGC	5 cut(s)	507, 739, 750, 1089, 1164
Sau3AI	GATC	5 cut(s)	1029, 1070, 1332, 1399, 1435
Sau96I	GGNCC	3 cut(s)	213, 224, 861
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	56, 559, 769
SduI	GDGCHC	3 cut(s)	309, 382, 479
SfaNI	GCATC	2 cut(s)	163, 1197
SfcI	CTRYAG	4 cut(s)	747, 879, 1089, 1353
SinI	GGWCC	2 cut(s)	213, 861
SmiMI	CAYNNNNRTG	1 cut(s)	995
SpeI	ACTAGT	3 cut(s)	11, 931, 1387
Sse9I	AATT	8 cut(s)	343, 435, 492, 563, 1174, 1257, 1362, 1395
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	8 cut(s)	12, 135, 383, 431, 905, 932, 1083, 1388
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	54, 557, 767
StyI	CCWWGG	2 cut(s)	84, 177
TaaI	ACNGT	4 cut(s)	663, 1020, 1285, 1371
TaiI	ACGT	1 cut(s)	303
TasI	AATT	8 cut(s)	343, 435, 492, 563, 1174, 1257, 1362, 1395
TatI	WGTACW	1 cut(s)	1308
Tru1I	TTAA	4 cut(s)	168, 237, 261, 756
Tru9I	TTAA	4 cut(s)	168, 237, 261, 756
TscAI	CASTG	3 cut(s)	666, 946, 1376
TseFI	GTSAC	1 cut(s)	657
TseI	GCWGC	5 cut(s)	506, 738, 749, 1088, 1163
Tsp45I	GTSAC	1 cut(s)	657
TspDTI	ATGAA	6 cut(s)	6, 17, 87, 639, 910, 1007
TspRI	CASTG	3 cut(s)	666, 946, 1376
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	213, 861
XapI	RAATTY	3 cut(s)	343, 435, 1257
XbaI	TCTAGA	1 cut(s)	134
XspI	CTAG	8 cut(s)	12, 135, 383, 431, 905, 932, 1083, 1388
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.