Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005076

Physical Location & Seq

Genomic Coordinates Reverse (-)

47677727 .. 47680552

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGATGCAGTTTCATCTATGGAAACTGCAGATCTCCACTCTGCTCCTACTACATTTATTGGGTCAAGTGATGGAGATTATCCGGTGATAAAAACCTTTAATGATGCCAAGACCATATGCTTTGTGGAGTCTCAAAAGCTTTGGGCCATTGCTGGTCCTATTGCCTTTAACATTTTGTGCAACTATGGTGTTAACTCCTTCACAAACATCTTTGTTGGGCATATTGGAAATTTGGAGCTCTCTGCTGTTGCAATTTCTCTGTCTGTCATTGCAAATTTCTCTTTTGGCTTTCTGCTTGGGATGGCAAGTGCACTTGAAACACTATGTGGGCAGGCATTTGGTGCTGGGCAAGTAGAAATGCTAGGAGTTTACATGCAACGATCATGGATAATTCTGATAATCACATGCTTTGGTTTACTACCACTTTATTTGTTCGCGACGCCAATCCTAAAACTCCTTGGCCAAGAAGATGACATTGCAAACCTTGCCGGGAAGTTCTCTATCCAAACCATTCCTCAAATGTTTTCACTGGCCATCAATTTCCCAACTCAAAAGTTCTTGCAAGCACAGAGCAGGGTTTCGGTTCTGGCATGGATTGGTTTTGCAACTCTAATTCTACACATAGGAATCCTCTATGTCTTTATCGAATTGTTCGGGTGGGGAACGAGTGGTGCTGCTGCAGCCTATAATTTCTCGGCATGGGGGATGTCATTGTCTCAAGTCTTTTATATAGTTCGTTGGTGTACAGATGGTTGGAAGGGATTGTCATGGTTAGCCTTCAAGGAATTATGGTCCTTTGCAAAACTCTCCCTTGCTTCAGCTGTAATGCTTTGCCTAGAGATTTGGTACTTCATGACCATAATTGTTCTCACCGGACACCTTGATGATCCTGTTATTGCAGTTGGCTCCCTTTCAATATGCATGAATCTGAATGGTTGGGAAGGCATGTTGTTTATTGGGATCAATGCAGCAATAAGCGTTCGAGTCTCCAATGAGCTTGGATCAGCACATCCGAGAGCTGCAAAATACTCCGTCATTATCACGATCATTGAGTCTCTCATCATTGGAATCTTTTTCGGGGGGATTATCTTGGCGGCCAAAGACCACTTTGCCATCATCTTTACTGAGAGCAAAGAGATGCAACAAGCAGTTTCTCGTTTAGCTTTCCTTCTCAGTATTACAATGATACTCAATAGTGTTCAGCCGGTTATTTCAGGTGTTGCTGTTGGAGGAGGGTGGCAAGCTTTGGTGGCTTACATAAACTTGTTTAGTTATTACATTGTTGGTCTACCTCTTGGGTTTCTTCTTGGTTACAAAACAAGGATGAGAGTGGAGGGAATTTGGATTGGTATGATATTCGGGACATCCTTGCAAACACTGATCCTCTTGTACATTGTTTACAAAACCAACTGGAACAAAGAGGTAGAACAAGCCTCGGAAAGAATGCGGCAGTGGACTGGAGATGAACTAGTAGTAGTTGATAACAAAAAAAAGAGTGGACAAGAAGGTGGACCTCTAATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

508

Amino Acids

55.68

Weight (kDa)

5.74

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	53 - 213	2.5e-31	MatE
MatE	PF01554	273 - 435	6.1e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00350
fragaria_vesca	FvH4_7g14750 FvH4_7g15820 FvH4_7g16700
malus_domestica	MD01G1066100.v1.1 MD07G1134500.v1.1
prunus_persica	Prupe.2G173200_v2.0.a1
pyrus_communis	pycom07g13180
rosa_chinensis	RchiOBHm_Chr1g0358621 RchiOBHm_Chr1g0359861
rosa_laevigata	RLG00000027848 RLG00000027940
rosa_multiflora	Rmu_sc0001609.1_g000022 Rmu_sc0003191.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297750
rosa_rugosa	Rorug01G0250800 Rorug01G0262900 Rorug01G0263000 Rorug01G0273300
rosa_samantha	Rh1AG264700 Rh1AG278200 Rh1AG287400 Rh1CG248400 Rh1CG261600 Rh1CG270500 Rh1DG259800 Rh1DG282100
rosa_wichuraiana	Rw1G023420 Rw1G024690 Rw1G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1288
AccII	CGCG	1 cut(s)	437
AciI	CCGC	2 cut(s)	1094, 1447
AclWI	GGATC	4 cut(s)	881, 968, 1009, 1375
AcoI	YGGCCR	3 cut(s)	460, 531, 1095
AcsI	RAATTY	3 cut(s)	229, 274, 1338
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	3 cut(s)	745, 848, 1391
AgsI	TTSAA	3 cut(s)	317, 781, 915
AhlI	ACTAGT	1 cut(s)	1468
AluBI	AGCT	7 cut(s)	139, 238, 821, 997, 1019, 1163, 1244
AluI	AGCT	7 cut(s)	139, 238, 821, 997, 1019, 1163, 1244
Alw21I	GWGCWC	2 cut(s)	240, 313
Alw26I	GTCTC	4 cut(s)	135, 720, 991, 1059
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	4 cut(s)	881, 968, 1009, 1375
AoxI	GGCC	4 cut(s)	144, 460, 531, 1095
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	5 cut(s)	674, 677, 680, 968, 1019
ApoI	RAATTY	3 cut(s)	229, 274, 1338
AspS9I	GGNCC	4 cut(s)	144, 155, 792, 1511
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	97, 862
AvaII	GGWCC	3 cut(s)	155, 792, 1511
BaeGI	GKGCMC	1 cut(s)	313
BalI	TGGCCA	2 cut(s)	462, 533
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	240, 313
BbvI	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BccI	CCATC	5 cut(s)	65, 295, 542, 743, 1121
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	4 cut(s)	135, 720, 991, 1059
BcuI	ACTAGT	1 cut(s)	1468
BfaI	CTAG	3 cut(s)	362, 836, 1469
BfmI	CTRYAG	3 cut(s)	27, 678, 1523
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	7 cut(s)	675, 678, 681, 969, 1020, 1095, 1448
BlsI	GCNGC	7 cut(s)	676, 679, 682, 970, 1021, 1096, 1449
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	3 cut(s)	155, 792, 1511
BmgT120I	GGNCC	4 cut(s)	144, 155, 792, 1511
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	94, 1128
BpmI	CTGGAG	1 cut(s)	1479
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	457, 1434
BsaWI	WCCGGW	2 cut(s)	82, 872
Bse118I	RCCGGY	1 cut(s)	1204
Bse1I	ACTGG	3 cut(s)	534, 1415, 1462
Bse3DI	GCAATG	3 cut(s)	147, 267, 474
BseDI	CCNNGG	2 cut(s)	457, 1434
BseGI	GGATG	6 cut(s)	10, 306, 711, 1009, 1329, 1364
BseMI	GCAATG	3 cut(s)	147, 267, 474
BseMII	CTCAG	2 cut(s)	1116, 1186
BseNI	ACTGG	3 cut(s)	534, 1415, 1462
BseRI	GAGGAG	1 cut(s)	1245
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	4 cut(s)	146, 462, 533, 1097
BsiHKAI	GWGCWC	2 cut(s)	240, 313
BsiSI	CCGG	4 cut(s)	83, 489, 873, 1205
BslFI	GGGAC	1 cut(s)	1375
BsmAI	GTCTC	4 cut(s)	135, 720, 991, 1059
BsmFI	GGGAC	1 cut(s)	1375
BsmI	GAATGC	1 cut(s)	1449
BsnI	GGCC	4 cut(s)	146, 462, 533, 1097
Bsp1286I	GDGCHC	2 cut(s)	240, 313
Bsp1407I	TGTACA	2 cut(s)	743, 1389
Bsp143I	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	2 cut(s)	1094, 1447
BspANI	GGCC	4 cut(s)	146, 462, 533, 1097
BspCNI	CTCAG	2 cut(s)	1117, 1185
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	1 cut(s)	907
BspMAI	CTGCAG	2 cut(s)	31, 682
BspPI	GGATC	4 cut(s)	881, 968, 1009, 1375
BsrDI	GCAATG	3 cut(s)	147, 267, 474
BsrFI	RCCGGY	1 cut(s)	1204
BsrGI	TGTACA	2 cut(s)	743, 1389
BsrI	ACTGG	3 cut(s)	534, 1415, 1462
BssAI	RCCGGY	1 cut(s)	1204
BssECI	CCNNGG	2 cut(s)	457, 1434
BssMI	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	1524
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	2 cut(s)	341, 485
BstAUI	TGTACA	2 cut(s)	743, 1389
BstC8I	GCNNGC	3 cut(s)	333, 564, 1242
BstDEI	CTNAG	2 cut(s)	1125, 1172
BstF5I	GGATG	6 cut(s)	10, 306, 711, 1009, 1329, 1364
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	7 cut(s)	34, 383, 889, 963, 1004, 1047, 1383
BstMAI	GTCTC	4 cut(s)	135, 720, 991, 1059
BstMBI	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 485, 680, 1250
BstNSI	RCATGY	3 cut(s)	376, 408, 949
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	3 cut(s)	27, 678, 1523
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	146, 462, 533, 1097
BtsCI	GGATG	6 cut(s)	10, 306, 711, 1009, 1329, 1364
BtsI	GCAGTG	1 cut(s)	1457
BtsIMutI	CAGTG	3 cut(s)	527, 1376, 1457
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	3 cut(s)	333, 564, 1242
CciI	TCATGA	1 cut(s)	852
Cfr10I	RCCGGY	1 cut(s)	1204
Cfr13I	GGNCC	4 cut(s)	144, 155, 792, 1511
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	3 cut(s)	744, 847, 1390
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	9 cut(s)	373, 384, 405, 591, 699, 768, 853, 922, 946
CviQI	GTAC	3 cut(s)	744, 847, 1390
DdeI	CTNAG	2 cut(s)	1125, 1172
DpnI	GATC	7 cut(s)	33, 382, 888, 962, 1003, 1046, 1382
DpnII	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	3 cut(s)	460, 531, 1095
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	155, 792, 1511
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	801
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	923
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	9 cut(s)	376, 387, 408, 594, 702, 771, 856, 925, 949
FaqI	GGGAC	1 cut(s)	1375
FatI	CATG	9 cut(s)	372, 383, 404, 590, 698, 767, 852, 921, 945
FauNDI	CATATG	1 cut(s)	116
FblI	GTMKAC	1 cut(s)	1288
Fnu4HI	GCNGC	7 cut(s)	675, 678, 681, 969, 1020, 1095, 1448
FokI	GGATG	6 cut(s)	17, 313, 718, 996, 1336, 1351
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	7 cut(s)	675, 678, 681, 969, 1020, 1095, 1448
FspBI	CTAG	3 cut(s)	362, 836, 1469
GluI	GCNGC	7 cut(s)	675, 678, 681, 969, 1020, 1095, 1448
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	1479
HaeIII	GGCC	4 cut(s)	146, 462, 533, 1097
HapII	CCGG	4 cut(s)	83, 489, 873, 1205
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	9 cut(s)	376, 387, 408, 594, 702, 771, 856, 925, 949
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	137, 1242
HinfI	GANTC	6 cut(s)	128, 627, 925, 984, 1052, 1068
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	4 cut(s)	83, 489, 873, 1205
HphI	GGTGA	2 cut(s)	97, 862
Hpy188I	TCNGA	4 cut(s)	396, 930, 1014, 1438
Hpy188III	TCNNGA	4 cut(s)	436, 853, 1042, 1360
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	6 cut(s)	208, 751, 787, 935, 1178, 1499
HpyCH4III	ACNGT	1 cut(s)	1524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 485, 680, 1250
HpyF3I	CTNAG	2 cut(s)	1125, 1172
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	9 cut(s)	376, 387, 408, 594, 702, 771, 856, 925, 949
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
LmnI	GCTCC	3 cut(s)	49, 235, 911
Lsp1109I	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
LweI	GCATC	2 cut(s)	94, 1128
MaeI	CTAG	3 cut(s)	362, 836, 1469
MaeIII	GTNAC	1 cut(s)	1310
MalI	GATC	7 cut(s)	33, 382, 888, 962, 1003, 1046, 1382
MboI	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
MboII	GAAGA	2 cut(s)	479, 1295
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	240, 313
MlsI	TGGCCA	2 cut(s)	462, 533
MluNI	TGGCCA	2 cut(s)	462, 533
MlyI	GAGTC	3 cut(s)	137, 993, 1061
MmeI	TCCRAC	2 cut(s)	734, 1207
Mox20I	TGGCCA	2 cut(s)	462, 533
Mph1103I	ATGCAT	1 cut(s)	923
MscI	TGGCCA	2 cut(s)	462, 533
MseI	TTAA	3 cut(s)	99, 168, 192
MslI	CAYNNNNRTG	1 cut(s)	882
Msp20I	TGGCCA	2 cut(s)	462, 533
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	4 cut(s)	83, 489, 873, 1205
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	1449
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	4 cut(s)	341, 485, 680, 1250
NciI	CCSGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	116
NdeII	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
NlaIII	CATG	9 cut(s)	376, 387, 408, 594, 702, 771, 856, 925, 949
NlaIV	GGNNCC	1 cut(s)	907
NmeAIII	GCCGAG	1 cut(s)	674
NruI	TCGCGA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	923
NspI	RCATGY	3 cut(s)	376, 408, 949
PagI	TCATGA	1 cut(s)	852
PctI	GAATGC	1 cut(s)	1449
PfeI	GAWTC	3 cut(s)	627, 925, 1068
PkrI	GCNGC	7 cut(s)	676, 679, 682, 970, 1021, 1096, 1449
PleI	GAGTC	3 cut(s)	136, 992, 1060
PpsI	GAGTC	3 cut(s)	136, 992, 1060
Psp124BI	GAGCTC	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	4 cut(s)	144, 155, 792, 1511
PstI	CTGCAG	2 cut(s)	31, 682
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	821
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	3 cut(s)	745, 848, 1391
RsaNI	GTAC	3 cut(s)	744, 847, 1390
RseI	CAYNNNNRTG	1 cut(s)	882
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	99, 168, 192
SatI	GCNGC	7 cut(s)	675, 678, 681, 969, 1020, 1095, 1448
Sau3AI	GATC	7 cut(s)	31, 380, 886, 960, 1001, 1044, 1380
Sau96I	GGNCC	4 cut(s)	144, 155, 792, 1511
SchI	GAGTC	3 cut(s)	137, 993, 1061
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	2 cut(s)	240, 313
SfaNI	GCATC	2 cut(s)	94, 1128
SfcI	CTRYAG	3 cut(s)	27, 678, 1523
SinI	GGWCC	3 cut(s)	155, 792, 1511
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SpeI	ACTAGT	1 cut(s)	1468
SsiI	CCGC	2 cut(s)	1094, 1447
SspMI	CTAG	3 cut(s)	362, 836, 1469
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	1524
TaqI	TCGA	2 cut(s)	645, 982
TatI	WGTACW	2 cut(s)	743, 1389
TauI	GCSGC	2 cut(s)	1097, 1450
TfiI	GAWTC	3 cut(s)	627, 925, 1068
Tru1I	TTAA	3 cut(s)	99, 168, 192
Tru9I	TTAA	3 cut(s)	99, 168, 192
TscAI	CASTG	3 cut(s)	534, 1383, 1457
TseI	GCWGC	5 cut(s)	674, 677, 680, 968, 1019
TspDTI	ATGAA	3 cut(s)	841, 938, 1479
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	3 cut(s)	534, 1383, 1457
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	3 cut(s)	155, 792, 1511
XapI	RAATTY	3 cut(s)	229, 274, 1338
XceI	RCATGY	3 cut(s)	376, 408, 949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	1288
XspI	CTAG	3 cut(s)	362, 836, 1469
Zsp2I	ATGCAT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.