Prupe.2G173200_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
21970339 .. 21973688
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G173200.1

Sequence Viewer

Length: 1509 bp
ATGGAAACTGCAGACCTCCACCATGCACCTCCTGCATTCATTGGCTCCAGTGATGGAGATTATCCGCCCATACGCAGCTTTGCCGACGCCAAGGTCATATGTTATTTGGAGACCACAAAGCTTTGGAGAATTGCAGGGCCAATTGCCTTCAATATTTTGTGCAACTATGGTATTAATTCCTTCACAAACATCTTTGCTGGGCATATTGGAAATGTGGAGCTCTCTGCTGTTGCAATTTCTCTCTCTGTCATTGCAAATTTCTCCTTCGGCTTCCTGCTTGGTATGGCAAGTGCACTTGAAACACTCTGTGGGCAAGCATTTGGTGCTGGACAAGTAGACATGCTAGGAGTTTACATGCAGCGCTCATGGCTAATTCTATTTGCCACCTGCTTCGCATTGCTACCGCTTTACGTATACTCTGCGCCGGTCCTAAAGCTGCTTGGCCAAGAAGATGACATTGCAGATCTAGCTGGAAAATTCTCTATCCAGACCATCCCTCAAATGTTTTCCCTTGCCGTCAATTTTCCAACTCAGAAGTTCTTGCAGGCACAGAGCAGGGTTCAGGTTCTGGCATGGATTGGCTTTGCAGCTCTTATAATACACATAGGAATTCTCTATCTCTTCATTAAAGTTTTCGGGTGGGGAACGAGCGGTGCTGCTGTCGCCTATGATATCTCAGCCTGGGGGATGGCAATAGCTCAGGTGGTTTATATAGTTTATTGGTGCAATAATGGCTGGAAGGGCTTGTCATGGTTGGCCTTCAAGGAACTATGGTCCTTTGCAAAACTCTCCATTGCTTCAGCTGTTATGCTTTGCCTAGAAATTTGGTACTTCATGACCATAATTGTTCTGACTGGACACCTTGATAACCCTGTCATTGCAGTTGGCTCCCTTTCAATATGCATGAATGTGAATGGGTGGGAAGGCATGCTGTTTATTGGGATCAATGCAGCCATAAGTGTTCGAGTCTCCAATGAGCTCGGATCAGCACATCCTAGAGCTGCAAAATACTCGGTCATTATCATCATCCTCGAGTCTCTCCTCATTGGGCTATTTTTCGCAGCGCTTATCCTGGCAGCCAAGGATCATTTTGCTATCATCTTCACTGACAGCAAAGAGATGCAACAAGCCGTTTCTCGTTTAGCATTCCTTCTCAGTGTTACAATGTTGCTTAATAGCGTTCAGCCTGTTATATCAGGTGTTGCTGTTGGAGGAGGGTGGCAAGCTATGGTGGCTTACATAAATTTGTTTTGTTATTATGTCATTGGCCTACCTCTTGGGTTTCTTCTGGGTTACAAAACAAGTTTGAGAGTGGAGGGAATTTGGATTGGCATGATATTTGGGACATTACTGCAGACAATCATCCTCTTGTGCATAGTTTATAAGACCAACTGGAACAAAGAGGTAAAACAAGCCTTAGAAAGAATGCGACAATGGACTGGAGAAGAACTAGTTGATCCTAGAAAATGGAGTGGGCAAGAAAATGGATGTCAAACTCAAACTCTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

55.16

Weight (kDa)

6.39

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 596, 1383
AarI CACCTGC 1 cut(s) 395
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 651
AccI GTMKAC 2 cut(s) 336, 414
AciI CCGC 3 cut(s) 65, 404, 651
AclWI GGATC 4 cut(s) 950, 991, 1092, 1451
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 6 cut(s) 256, 476, 609, 822, 1243, 1320
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 830
AfeI AGCGCT 2 cut(s) 362, 1065
AgsI TTSAA 4 cut(s) 151, 299, 763, 897
AhlI ACTAGT 1 cut(s) 1450
AjnI CCWGG 2 cut(s) 680, 1071
Alw21I GWGCWC 3 cut(s) 222, 295, 981
Alw26I GTCTC 3 cut(s) 104, 973, 1041
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 4 cut(s) 950, 991, 1092, 1451
AlwNI CAGNNNCTG 1 cut(s) 568
Ama87I CYCGRG 1 cut(s) 1031
Aor51HI AGCGCT 2 cut(s) 362, 1065
AoxI GGCC 4 cut(s) 137, 442, 756, 1267
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 9 cut(s) 75, 358, 436, 587, 656, 950, 1001, 1061, 1076
ApoI RAATTY 6 cut(s) 256, 476, 609, 822, 1243, 1320
AseI ATTAAT 1 cut(s) 174
AspLEI GCGC 3 cut(s) 363, 424, 1066
AspS9I GGNCC 3 cut(s) 137, 427, 774
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 2 cut(s) 427, 774
BaeGI GKGCMC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 444
BanII GRGCYC 2 cut(s) 222, 981
Bbv12I GWGCWC 3 cut(s) 222, 295, 981
BbvI GCAGC 9 cut(s) 87, 370, 423, 599, 643, 962, 988, 1073, 1088
BccI CCATC 3 cut(s) 47, 500, 682
BceAI ACGGC 2 cut(s) 500, 1115
BcgI CGANNNNNNTGC 2 cut(s) 993, 1027
BciT130I CCWGG 2 cut(s) 682, 1073
BcoDI GTCTC 3 cut(s) 104, 973, 1041
BcuI ACTAGT 1 cut(s) 1450
BfaI CTAG 6 cut(s) 344, 467, 818, 996, 1451, 1461
BfmI CTRYAG 3 cut(s) 9, 1352, 1505
BfoI RGCGCY 2 cut(s) 364, 1067
BfuAI ACCTGC 1 cut(s) 395
BglII AGATCT 1 cut(s) 463
BisI GCNGC 9 cut(s) 76, 359, 437, 588, 657, 951, 1002, 1062, 1077
BlsI GCNGC 9 cut(s) 77, 360, 438, 589, 658, 952, 1003, 1063, 1078
Bme1390I CCNGG 2 cut(s) 682, 1073
Bme18I GGWCC 2 cut(s) 427, 774
BmeT110I CYCGRG 1 cut(s) 1031
BmgT120I GGNCC 3 cut(s) 137, 427, 774
BmiI GGNNCC 2 cut(s) 46, 889
BmrFI CCNGG 2 cut(s) 682, 1073
BmsI GCATC 1 cut(s) 1110
BpmI CTGGAG 2 cut(s) 31, 1461
Bpu10I CCTNAGC 1 cut(s) 699
BsaAI YACGTR 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 90, 681, 1080
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 4 cut(s) 48, 859, 1397, 1444
Bse3DI GCAATG 5 cut(s) 249, 395, 456, 792, 876
BseBI CCWGG 2 cut(s) 682, 1073
BseDI CCNNGG 3 cut(s) 90, 681, 1080
BseGI GGATG 6 cut(s) 492, 693, 991, 1026, 1362, 1493
BseMI GCAATG 5 cut(s) 249, 395, 456, 792, 876
BseMII CTCAG 4 cut(s) 545, 690, 713, 1168
BseNI ACTGG 4 cut(s) 48, 859, 1397, 1444
BseRI GAGGAG 2 cut(s) 1031, 1227
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 9 cut(s) 87, 370, 423, 599, 643, 962, 988, 1073, 1088
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 4 cut(s) 139, 444, 758, 1269
BsiHKAI GWGCWC 3 cut(s) 222, 295, 981
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 1357
BsmAI GTCTC 3 cut(s) 104, 973, 1041
BsmFI GGGAC 1 cut(s) 1357
BsmI GAATGC 3 cut(s) 35, 1145, 1431
BsnI GGCC 4 cut(s) 139, 444, 758, 1269
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 1031
Bsp1286I GDGCHC 3 cut(s) 222, 295, 981
Bsp143I GATC 5 cut(s) 463, 942, 983, 1084, 1456
BspACI CCGC 3 cut(s) 65, 404, 651
BspANI GGCC 4 cut(s) 139, 444, 758, 1269
BspCNI CTCAG 4 cut(s) 544, 689, 712, 1167
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 46, 889
BspMAI CTGCAG 2 cut(s) 13, 1356
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 4 cut(s) 950, 991, 1092, 1451
BspTNI GGTCTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 651
BsrDI GCAATG 5 cut(s) 249, 395, 456, 792, 876
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 4 cut(s) 48, 859, 1397, 1444
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 90, 681, 1080
BssMI GATC 5 cut(s) 463, 942, 983, 1084, 1456
BssNAI GTATAC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 90, 1080
Bst1107I GTATAC 1 cut(s) 415
Bst2UI CCWGG 2 cut(s) 682, 1073
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 2 cut(s) 32, 323
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 4 cut(s) 315, 546, 929, 1224
BstDEI CTNAG 5 cut(s) 531, 676, 699, 1154, 1417
BstF5I GGATG 6 cut(s) 492, 693, 991, 1026, 1362, 1493
BstH2I RGCGCY 2 cut(s) 364, 1067
BstHHI GCGC 3 cut(s) 363, 424, 1066
BstKTI GATC 5 cut(s) 466, 945, 986, 1087, 1459
BstMAI GTCTC 3 cut(s) 104, 973, 1041
BstMBI GATC 5 cut(s) 463, 942, 983, 1084, 1456
BstMWI GCNNNNNNNGC 8 cut(s) 32, 323, 367, 467, 662, 732, 741, 1232
BstNI CCWGG 2 cut(s) 682, 1073
BstNSI RCATGY 3 cut(s) 343, 358, 931
BstSCI CCNGG 2 cut(s) 680, 1071
BstSFI CTRYAG 3 cut(s) 9, 1352, 1505
BstSLI GKGCMC 1 cut(s) 295
BstSNI TACGTA 1 cut(s) 412
BstV1I GCAGC 9 cut(s) 87, 370, 423, 599, 643, 962, 988, 1073, 1088
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BstZ17I GTATAC 1 cut(s) 415
BsuRI GGCC 4 cut(s) 139, 444, 758, 1269
BtsCI GGATG 6 cut(s) 492, 693, 991, 1026, 1362, 1493
BtsIMutI CAGTG 3 cut(s) 55, 1104, 1162
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 4 cut(s) 315, 546, 929, 1224
CaiI CAGNNNCTG 1 cut(s) 568
CciI TCATGA 1 cut(s) 834
CfoI GCGC 3 cut(s) 363, 424, 1066
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 137, 427, 774
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 829
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 5 cut(s) 531, 676, 699, 1154, 1417
DpnI GATC 5 cut(s) 465, 944, 985, 1086, 1458
DpnII GATC 5 cut(s) 463, 942, 983, 1084, 1456
DraIII CACNNNGTG 1 cut(s) 308
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 54
Ecl136II GAGCTC 2 cut(s) 220, 979
Eco105I TACGTA 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 90, 1080
Eco24I GRGCYC 2 cut(s) 222, 981
Eco31I GGTCTC 1 cut(s) 104
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 427, 774
Eco47III AGCGCT 2 cut(s) 362, 1065
Eco53kI GAGCTC 2 cut(s) 220, 979
Eco57I CTGAAG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 1031
EcoICRI GAGCTC 2 cut(s) 220, 979
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 680, 1071
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 90, 1080
EcoT22I ATGCAT 1 cut(s) 905
EcoT38I GRGCYC 2 cut(s) 222, 981
ErhI CCWWGG 2 cut(s) 90, 1080
FaqI GGGAC 1 cut(s) 1357
FauNDI CATATG 1 cut(s) 98
FblI GTMKAC 2 cut(s) 336, 414
Fnu4HI GCNGC 9 cut(s) 76, 359, 437, 588, 657, 951, 1002, 1062, 1077
FokI GGATG 6 cut(s) 479, 700, 978, 1013, 1349, 1500
FriOI GRGCYC 2 cut(s) 222, 981
Fsp4HI GCNGC 9 cut(s) 76, 359, 437, 588, 657, 951, 1002, 1062, 1077
FspBI CTAG 6 cut(s) 344, 467, 818, 996, 1451, 1461
GlaI GCGC 3 cut(s) 362, 423, 1065
GluI GCNGC 9 cut(s) 76, 359, 437, 588, 657, 951, 1002, 1062, 1077
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 2 cut(s) 31, 1461
HaeII RGCGCY 2 cut(s) 364, 1067
HaeIII GGCC 4 cut(s) 139, 444, 758, 1269
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 363, 424, 1066
Hin1I GRCGYC 1 cut(s) 87
Hin6I GCGC 3 cut(s) 361, 422, 1064
HinP1I GCGC 3 cut(s) 361, 422, 1064
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 966, 1034
HpaII CCGG 1 cut(s) 425
Hpy166II GTNNAC 4 cut(s) 293, 337, 352, 415
Hpy188I TCNGA 3 cut(s) 534, 852, 983
Hpy188III TCNNGA 2 cut(s) 487, 835
Hpy8I GTNNAC 4 cut(s) 293, 337, 352, 415
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 7 cut(s) 157, 190, 274, 733, 769, 917, 1160
HpyCH4IV ACGT 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 323, 367, 467, 662, 732, 741, 1232
HpyF3I CTNAG 5 cut(s) 531, 676, 699, 1154, 1417
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 87
HspAI GCGC 3 cut(s) 361, 422, 1064
Kzo9I GATC 5 cut(s) 463, 942, 983, 1084, 1456
LmnI GCTCC 3 cut(s) 50, 217, 893
Lsp1109I GCAGC 9 cut(s) 87, 370, 423, 599, 643, 962, 988, 1073, 1088
LweI GCATC 1 cut(s) 1110
MaeI CTAG 6 cut(s) 344, 467, 818, 996, 1451, 1461
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 1159, 1292
MalI GATC 5 cut(s) 465, 944, 985, 1086, 1458
MbiI CCGCTC 1 cut(s) 651
MboI GATC 5 cut(s) 463, 942, 983, 1084, 1456
MboII GAAGA 5 cut(s) 461, 613, 1093, 1277, 1457
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 3 cut(s) 222, 295, 981
MlsI TGGCCA 1 cut(s) 444
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 2 cut(s) 975, 1043
MmeI TCCRAC 2 cut(s) 551, 1189
Mox20I TGGCCA 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 905
MscI TGGCCA 1 cut(s) 444
MseI TTAA 3 cut(s) 174, 627, 1173
MslI CAYNNNNRTG 1 cut(s) 908
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 682, 1073
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 3 cut(s) 35, 1145, 1431
MvaI CCWGG 2 cut(s) 682, 1073
MwoI GCNNNNNNNGC 8 cut(s) 32, 323, 367, 467, 662, 732, 741, 1232
NdeI CATATG 1 cut(s) 98
NdeII GATC 5 cut(s) 463, 942, 983, 1084, 1456
NlaIV GGNNCC 2 cut(s) 46, 889
NsiI ATGCAT 1 cut(s) 905
NspI RCATGY 3 cut(s) 343, 358, 931
PaeI GCATGC 1 cut(s) 931
PaeR7I CTCGAG 1 cut(s) 1031
PagI TCATGA 1 cut(s) 834
PaqCI CACCTGC 1 cut(s) 395
PctI GAATGC 3 cut(s) 35, 1145, 1431
PkrI GCNGC 9 cut(s) 77, 360, 438, 589, 658, 952, 1003, 1063, 1078
PleI GAGTC 2 cut(s) 974, 1042
PpsI GAGTC 2 cut(s) 974, 1042
Ppu21I YACGTR 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 2 cut(s) 596, 1383
Psp124BI GAGCTC 2 cut(s) 222, 981
Psp6I CCWGG 2 cut(s) 680, 1071
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 680, 1071
PspN4I GGNNCC 2 cut(s) 46, 889
PspPI GGNCC 3 cut(s) 137, 427, 774
PspXI VCTCGAGB 1 cut(s) 1031
PstI CTGCAG 2 cut(s) 13, 1356
PstNI CAGNNNCTG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
RseI CAYNNNNRTG 1 cut(s) 908
SacI GAGCTC 2 cut(s) 222, 981
SaqAI TTAA 3 cut(s) 174, 627, 1173
SatI GCNGC 9 cut(s) 76, 359, 437, 588, 657, 951, 1002, 1062, 1077
Sau3AI GATC 5 cut(s) 463, 942, 983, 1084, 1456
Sau96I GGNCC 3 cut(s) 137, 427, 774
SchI GAGTC 2 cut(s) 975, 1043
ScrFI CCNGG 2 cut(s) 682, 1073
SduI GDGCHC 3 cut(s) 222, 295, 981
SfaNI GCATC 1 cut(s) 1110
SfcI CTRYAG 3 cut(s) 9, 1352, 1505
Sfr274I CTCGAG 1 cut(s) 1031
SinI GGWCC 2 cut(s) 427, 774
SlaI CTCGAG 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
SnaBI TACGTA 1 cut(s) 412
SpeI ACTAGT 1 cut(s) 1450
SphI GCATGC 1 cut(s) 931
SsiI CCGC 3 cut(s) 65, 404, 651
SspI AATATT 1 cut(s) 154
SspMI CTAG 6 cut(s) 344, 467, 818, 996, 1451, 1461
SstI GAGCTC 2 cut(s) 222, 981
StyD4I CCNGG 2 cut(s) 680, 1071
StyI CCWWGG 2 cut(s) 90, 1080
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 964, 1032
TaqII GACCGA 1 cut(s) 1003
Tru1I TTAA 3 cut(s) 174, 627, 1173
Tru9I TTAA 3 cut(s) 174, 627, 1173
TscAI CASTG 3 cut(s) 55, 1111, 1162
TseI GCWGC 9 cut(s) 75, 358, 436, 587, 656, 950, 1001, 1061, 1076
TspDTI ATGAA 4 cut(s) 28, 613, 823, 920
TspRI CASTG 3 cut(s) 55, 1111, 1162
VneI GTGCAC 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 427, 774
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 6 cut(s) 256, 476, 609, 822, 1243, 1320
XceI RCATGY 3 cut(s) 343, 358, 931
XhoI CTCGAG 1 cut(s) 1031
XmiI GTMKAC 2 cut(s) 336, 414
XspI CTAG 6 cut(s) 344, 467, 818, 996, 1451, 1461
Zsp2I ATGCAT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.