Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00350 |
| fragaria_vesca | FvH4_7g14750 FvH4_7g15820 FvH4_7g16700 |
| malus_domestica | MD01G1066100.v1.1 MD07G1134500.v1.1 |
| prunus_persica | Prupe.2G173200_v2.0.a1 |
| pyrus_communis | pycom07g13180 |
| rosa_chinensis | RchiOBHm_Chr1g0358621 RchiOBHm_Chr1g0359861 |
| rosa_laevigata | RLG00000027848 RLG00000027940 |
| rosa_multiflora | Rmu_sc0001609.1_g000022 Rmu_sc0003191.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00297750 |
| rosa_rugosa | Rorug01G0250800 Rorug01G0262900 Rorug01G0263000 Rorug01G0273300 |
| rosa_samantha | Rh1AG264700 Rh1AG278200 Rh1AG287400 Rh1CG248400 Rh1CG261600 Rh1CG270500 Rh1DG259800 Rh1DG282100 |
| rosa_wichuraiana | Rw1G023420 Rw1G024690 Rw1G025520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 596, 1383 |
| AarI | CACCTGC | 1 cut(s) | 395 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 92 |
| Acc36I | ACCTGC | 1 cut(s) | 395 |
| AccBSI | CCGCTC | 1 cut(s) | 651 |
| AccI | GTMKAC | 2 cut(s) | 336, 414 |
| AciI | CCGC | 3 cut(s) | 65, 404, 651 |
| AclWI | GGATC | 4 cut(s) | 950, 991, 1092, 1451 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AcsI | RAATTY | 6 cut(s) | 256, 476, 609, 822, 1243, 1320 |
| AcuI | CTGAAG | 1 cut(s) | 783 |
| AcyI | GRCGYC | 1 cut(s) | 87 |
| AdeI | CACNNNGTG | 1 cut(s) | 308 |
| AfaI | GTAC | 1 cut(s) | 830 |
| AfeI | AGCGCT | 2 cut(s) | 362, 1065 |
| AgsI | TTSAA | 4 cut(s) | 151, 299, 763, 897 |
| AhlI | ACTAGT | 1 cut(s) | 1450 |
| AjnI | CCWGG | 2 cut(s) | 680, 1071 |
| Alw21I | GWGCWC | 3 cut(s) | 222, 295, 981 |
| Alw26I | GTCTC | 3 cut(s) | 104, 973, 1041 |
| Alw44I | GTGCAC | 1 cut(s) | 291 |
| AlwI | GGATC | 4 cut(s) | 950, 991, 1092, 1451 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 568 |
| Ama87I | CYCGRG | 1 cut(s) | 1031 |
| Aor51HI | AGCGCT | 2 cut(s) | 362, 1065 |
| AoxI | GGCC | 4 cut(s) | 137, 442, 756, 1267 |
| ApaLI | GTGCAC | 1 cut(s) | 291 |
| ApeKI | GCWGC | 9 cut(s) | 75, 358, 436, 587, 656, 950, 1001, 1061, 1076 |
| ApoI | RAATTY | 6 cut(s) | 256, 476, 609, 822, 1243, 1320 |
| AseI | ATTAAT | 1 cut(s) | 174 |
| AspLEI | GCGC | 3 cut(s) | 363, 424, 1066 |
| AspS9I | GGNCC | 3 cut(s) | 137, 427, 774 |
| AvaI | CYCGRG | 1 cut(s) | 1031 |
| AvaII | GGWCC | 2 cut(s) | 427, 774 |
| BaeGI | GKGCMC | 1 cut(s) | 295 |
| BalI | TGGCCA | 1 cut(s) | 444 |
| BanII | GRGCYC | 2 cut(s) | 222, 981 |
| Bbv12I | GWGCWC | 3 cut(s) | 222, 295, 981 |
| BbvI | GCAGC | 9 cut(s) | 87, 370, 423, 599, 643, 962, 988, 1073, 1088 |
| BccI | CCATC | 3 cut(s) | 47, 500, 682 |
| BceAI | ACGGC | 2 cut(s) | 500, 1115 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 993, 1027 |
| BciT130I | CCWGG | 2 cut(s) | 682, 1073 |
| BcoDI | GTCTC | 3 cut(s) | 104, 973, 1041 |
| BcuI | ACTAGT | 1 cut(s) | 1450 |
| BfaI | CTAG | 6 cut(s) | 344, 467, 818, 996, 1451, 1461 |
| BfmI | CTRYAG | 3 cut(s) | 9, 1352, 1505 |
| BfoI | RGCGCY | 2 cut(s) | 364, 1067 |
| BfuAI | ACCTGC | 1 cut(s) | 395 |
| BglII | AGATCT | 1 cut(s) | 463 |
| BisI | GCNGC | 9 cut(s) | 76, 359, 437, 588, 657, 951, 1002, 1062, 1077 |
| BlsI | GCNGC | 9 cut(s) | 77, 360, 438, 589, 658, 952, 1003, 1063, 1078 |
| Bme1390I | CCNGG | 2 cut(s) | 682, 1073 |
| Bme18I | GGWCC | 2 cut(s) | 427, 774 |
| BmeT110I | CYCGRG | 1 cut(s) | 1031 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 427, 774 |
| BmiI | GGNNCC | 2 cut(s) | 46, 889 |
| BmrFI | CCNGG | 2 cut(s) | 682, 1073 |
| BmsI | GCATC | 1 cut(s) | 1110 |
| BpmI | CTGGAG | 2 cut(s) | 31, 1461 |
| Bpu10I | CCTNAGC | 1 cut(s) | 699 |
| BsaAI | YACGTR | 1 cut(s) | 412 |
| BsaHI | GRCGYC | 1 cut(s) | 87 |
| BsaI | GGTCTC | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 3 cut(s) | 90, 681, 1080 |
| Bse118I | RCCGGY | 1 cut(s) | 424 |
| Bse1I | ACTGG | 4 cut(s) | 48, 859, 1397, 1444 |
| Bse3DI | GCAATG | 5 cut(s) | 249, 395, 456, 792, 876 |
| BseBI | CCWGG | 2 cut(s) | 682, 1073 |
| BseDI | CCNNGG | 3 cut(s) | 90, 681, 1080 |
| BseGI | GGATG | 6 cut(s) | 492, 693, 991, 1026, 1362, 1493 |
| BseMI | GCAATG | 5 cut(s) | 249, 395, 456, 792, 876 |
| BseMII | CTCAG | 4 cut(s) | 545, 690, 713, 1168 |
| BseNI | ACTGG | 4 cut(s) | 48, 859, 1397, 1444 |
| BseRI | GAGGAG | 2 cut(s) | 1031, 1227 |
| BseSI | GKGCMC | 1 cut(s) | 295 |
| BseXI | GCAGC | 9 cut(s) | 87, 370, 423, 599, 643, 962, 988, 1073, 1088 |
| BseYI | CCCAGC | 1 cut(s) | 197 |
| BshFI | GGCC | 4 cut(s) | 139, 444, 758, 1269 |
| BsiHKAI | GWGCWC | 3 cut(s) | 222, 295, 981 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1031 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| BslFI | GGGAC | 1 cut(s) | 1357 |
| BsmAI | GTCTC | 3 cut(s) | 104, 973, 1041 |
| BsmFI | GGGAC | 1 cut(s) | 1357 |
| BsmI | GAATGC | 3 cut(s) | 35, 1145, 1431 |
| BsnI | GGCC | 4 cut(s) | 139, 444, 758, 1269 |
| Bso31I | GGTCTC | 1 cut(s) | 104 |
| BsoBI | CYCGRG | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 3 cut(s) | 222, 295, 981 |
| Bsp143I | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| BspACI | CCGC | 3 cut(s) | 65, 404, 651 |
| BspANI | GGCC | 4 cut(s) | 139, 444, 758, 1269 |
| BspCNI | CTCAG | 4 cut(s) | 544, 689, 712, 1167 |
| BspHI | TCATGA | 1 cut(s) | 834 |
| BspLI | GGNNCC | 2 cut(s) | 46, 889 |
| BspMAI | CTGCAG | 2 cut(s) | 13, 1356 |
| BspMI | ACCTGC | 1 cut(s) | 395 |
| BspPI | GGATC | 4 cut(s) | 950, 991, 1092, 1451 |
| BspTNI | GGTCTC | 1 cut(s) | 104 |
| BsrBI | CCGCTC | 1 cut(s) | 651 |
| BsrDI | GCAATG | 5 cut(s) | 249, 395, 456, 792, 876 |
| BsrFI | RCCGGY | 1 cut(s) | 424 |
| BsrI | ACTGG | 4 cut(s) | 48, 859, 1397, 1444 |
| BssAI | RCCGGY | 1 cut(s) | 424 |
| BssECI | CCNNGG | 3 cut(s) | 90, 681, 1080 |
| BssMI | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| BssNAI | GTATAC | 1 cut(s) | 415 |
| BssNI | GRCGYC | 1 cut(s) | 87 |
| BssT1I | CCWWGG | 2 cut(s) | 90, 1080 |
| Bst1107I | GTATAC | 1 cut(s) | 415 |
| Bst2UI | CCWGG | 2 cut(s) | 682, 1073 |
| Bst6I | CTCTTC | 1 cut(s) | 626 |
| BstACI | GRCGYC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 32, 323 |
| BstBAI | YACGTR | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 4 cut(s) | 315, 546, 929, 1224 |
| BstDEI | CTNAG | 5 cut(s) | 531, 676, 699, 1154, 1417 |
| BstF5I | GGATG | 6 cut(s) | 492, 693, 991, 1026, 1362, 1493 |
| BstH2I | RGCGCY | 2 cut(s) | 364, 1067 |
| BstHHI | GCGC | 3 cut(s) | 363, 424, 1066 |
| BstKTI | GATC | 5 cut(s) | 466, 945, 986, 1087, 1459 |
| BstMAI | GTCTC | 3 cut(s) | 104, 973, 1041 |
| BstMBI | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 32, 323, 367, 467, 662, 732, 741, 1232 |
| BstNI | CCWGG | 2 cut(s) | 682, 1073 |
| BstNSI | RCATGY | 3 cut(s) | 343, 358, 931 |
| BstSCI | CCNGG | 2 cut(s) | 680, 1071 |
| BstSFI | CTRYAG | 3 cut(s) | 9, 1352, 1505 |
| BstSLI | GKGCMC | 1 cut(s) | 295 |
| BstSNI | TACGTA | 1 cut(s) | 412 |
| BstV1I | GCAGC | 9 cut(s) | 87, 370, 423, 599, 643, 962, 988, 1073, 1088 |
| BstX2I | RGATCY | 1 cut(s) | 463 |
| BstYI | RGATCY | 1 cut(s) | 463 |
| BstZ17I | GTATAC | 1 cut(s) | 415 |
| BsuRI | GGCC | 4 cut(s) | 139, 444, 758, 1269 |
| BtsCI | GGATG | 6 cut(s) | 492, 693, 991, 1026, 1362, 1493 |
| BtsIMutI | CAGTG | 3 cut(s) | 55, 1104, 1162 |
| BveI | ACCTGC | 1 cut(s) | 395 |
| Cac8I | GCNNGC | 4 cut(s) | 315, 546, 929, 1224 |
| CaiI | CAGNNNCTG | 1 cut(s) | 568 |
| CciI | TCATGA | 1 cut(s) | 834 |
| CfoI | GCGC | 3 cut(s) | 363, 424, 1066 |
| Cfr10I | RCCGGY | 1 cut(s) | 424 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 427, 774 |
| CseI | GACGC | 1 cut(s) | 95 |
| Csp6I | GTAC | 1 cut(s) | 829 |
| CviQI | GTAC | 1 cut(s) | 829 |
| DdeI | CTNAG | 5 cut(s) | 531, 676, 699, 1154, 1417 |
| DpnI | GATC | 5 cut(s) | 465, 944, 985, 1086, 1458 |
| DpnII | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| DraIII | CACNNNGTG | 1 cut(s) | 308 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 92 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 92 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 626 |
| EarI | CTCTTC | 1 cut(s) | 626 |
| EciI | GGCGGA | 1 cut(s) | 54 |
| Ecl136II | GAGCTC | 2 cut(s) | 220, 979 |
| Eco105I | TACGTA | 1 cut(s) | 412 |
| Eco130I | CCWWGG | 2 cut(s) | 90, 1080 |
| Eco24I | GRGCYC | 2 cut(s) | 222, 981 |
| Eco31I | GGTCTC | 1 cut(s) | 104 |
| Eco32I | GATATC | 1 cut(s) | 673 |
| Eco47I | GGWCC | 2 cut(s) | 427, 774 |
| Eco47III | AGCGCT | 2 cut(s) | 362, 1065 |
| Eco53kI | GAGCTC | 2 cut(s) | 220, 979 |
| Eco57I | CTGAAG | 1 cut(s) | 783 |
| Eco88I | CYCGRG | 1 cut(s) | 1031 |
| EcoICRI | GAGCTC | 2 cut(s) | 220, 979 |
| EcoRI | GAATTC | 1 cut(s) | 609 |
| EcoRII | CCWGG | 2 cut(s) | 680, 1071 |
| EcoRV | GATATC | 1 cut(s) | 673 |
| EcoT14I | CCWWGG | 2 cut(s) | 90, 1080 |
| EcoT22I | ATGCAT | 1 cut(s) | 905 |
| EcoT38I | GRGCYC | 2 cut(s) | 222, 981 |
| ErhI | CCWWGG | 2 cut(s) | 90, 1080 |
| FaqI | GGGAC | 1 cut(s) | 1357 |
| FauNDI | CATATG | 1 cut(s) | 98 |
| FblI | GTMKAC | 2 cut(s) | 336, 414 |
| Fnu4HI | GCNGC | 9 cut(s) | 76, 359, 437, 588, 657, 951, 1002, 1062, 1077 |
| FokI | GGATG | 6 cut(s) | 479, 700, 978, 1013, 1349, 1500 |
| FriOI | GRGCYC | 2 cut(s) | 222, 981 |
| Fsp4HI | GCNGC | 9 cut(s) | 76, 359, 437, 588, 657, 951, 1002, 1062, 1077 |
| FspBI | CTAG | 6 cut(s) | 344, 467, 818, 996, 1451, 1461 |
| GlaI | GCGC | 3 cut(s) | 362, 423, 1065 |
| GluI | GCNGC | 9 cut(s) | 76, 359, 437, 588, 657, 951, 1002, 1062, 1077 |
| GsaI | CCCAGC | 1 cut(s) | 201 |
| GsuI | CTGGAG | 2 cut(s) | 31, 1461 |
| HaeII | RGCGCY | 2 cut(s) | 364, 1067 |
| HaeIII | GGCC | 4 cut(s) | 139, 444, 758, 1269 |
| HapII | CCGG | 1 cut(s) | 425 |
| HgaI | GACGC | 1 cut(s) | 95 |
| HhaI | GCGC | 3 cut(s) | 363, 424, 1066 |
| Hin1I | GRCGYC | 1 cut(s) | 87 |
| Hin6I | GCGC | 3 cut(s) | 361, 422, 1064 |
| HinP1I | GCGC | 3 cut(s) | 361, 422, 1064 |
| HindIII | AAGCTT | 1 cut(s) | 119 |
| HinfI | GANTC | 2 cut(s) | 966, 1034 |
| HpaII | CCGG | 1 cut(s) | 425 |
| Hpy166II | GTNNAC | 4 cut(s) | 293, 337, 352, 415 |
| Hpy188I | TCNGA | 3 cut(s) | 534, 852, 983 |
| Hpy188III | TCNNGA | 2 cut(s) | 487, 835 |
| Hpy8I | GTNNAC | 4 cut(s) | 293, 337, 352, 415 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 7 cut(s) | 157, 190, 274, 733, 769, 917, 1160 |
| HpyCH4IV | ACGT | 1 cut(s) | 411 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 32, 323, 367, 467, 662, 732, 741, 1232 |
| HpyF3I | CTNAG | 5 cut(s) | 531, 676, 699, 1154, 1417 |
| HpySE526I | ACGT | 1 cut(s) | 411 |
| Hsp92I | GRCGYC | 1 cut(s) | 87 |
| HspAI | GCGC | 3 cut(s) | 361, 422, 1064 |
| Kzo9I | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| LmnI | GCTCC | 3 cut(s) | 50, 217, 893 |
| Lsp1109I | GCAGC | 9 cut(s) | 87, 370, 423, 599, 643, 962, 988, 1073, 1088 |
| LweI | GCATC | 1 cut(s) | 1110 |
| MaeI | CTAG | 6 cut(s) | 344, 467, 818, 996, 1451, 1461 |
| MaeII | ACGT | 1 cut(s) | 411 |
| MaeIII | GTNAC | 2 cut(s) | 1159, 1292 |
| MalI | GATC | 5 cut(s) | 465, 944, 985, 1086, 1458 |
| MbiI | CCGCTC | 1 cut(s) | 651 |
| MboI | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| MboII | GAAGA | 5 cut(s) | 461, 613, 1093, 1277, 1457 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 1 cut(s) | 463 |
| MhlI | GDGCHC | 3 cut(s) | 222, 295, 981 |
| MlsI | TGGCCA | 1 cut(s) | 444 |
| MluNI | TGGCCA | 1 cut(s) | 444 |
| MlyI | GAGTC | 2 cut(s) | 975, 1043 |
| MmeI | TCCRAC | 2 cut(s) | 551, 1189 |
| Mox20I | TGGCCA | 1 cut(s) | 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 905 |
| MscI | TGGCCA | 1 cut(s) | 444 |
| MseI | TTAA | 3 cut(s) | 174, 627, 1173 |
| MslI | CAYNNNNRTG | 1 cut(s) | 908 |
| Msp20I | TGGCCA | 1 cut(s) | 444 |
| MspA1I | CMGCKG | 1 cut(s) | 803 |
| MspI | CCGG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 2 cut(s) | 682, 1073 |
| MunI | CAATTG | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 3 cut(s) | 35, 1145, 1431 |
| MvaI | CCWGG | 2 cut(s) | 682, 1073 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 32, 323, 367, 467, 662, 732, 741, 1232 |
| NdeI | CATATG | 1 cut(s) | 98 |
| NdeII | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 889 |
| NsiI | ATGCAT | 1 cut(s) | 905 |
| NspI | RCATGY | 3 cut(s) | 343, 358, 931 |
| PaeI | GCATGC | 1 cut(s) | 931 |
| PaeR7I | CTCGAG | 1 cut(s) | 1031 |
| PagI | TCATGA | 1 cut(s) | 834 |
| PaqCI | CACCTGC | 1 cut(s) | 395 |
| PctI | GAATGC | 3 cut(s) | 35, 1145, 1431 |
| PkrI | GCNGC | 9 cut(s) | 77, 360, 438, 589, 658, 952, 1003, 1063, 1078 |
| PleI | GAGTC | 2 cut(s) | 974, 1042 |
| PpsI | GAGTC | 2 cut(s) | 974, 1042 |
| Ppu21I | YACGTR | 1 cut(s) | 412 |
| PshBI | ATTAAT | 1 cut(s) | 174 |
| PsiI | TTATAA | 2 cut(s) | 596, 1383 |
| Psp124BI | GAGCTC | 2 cut(s) | 222, 981 |
| Psp6I | CCWGG | 2 cut(s) | 680, 1071 |
| PspFI | CCCAGC | 1 cut(s) | 197 |
| PspGI | CCWGG | 2 cut(s) | 680, 1071 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 889 |
| PspPI | GGNCC | 3 cut(s) | 137, 427, 774 |
| PspXI | VCTCGAGB | 1 cut(s) | 1031 |
| PstI | CTGCAG | 2 cut(s) | 13, 1356 |
| PstNI | CAGNNNCTG | 1 cut(s) | 568 |
| PsuI | RGATCY | 1 cut(s) | 463 |
| PvuII | CAGCTG | 1 cut(s) | 803 |
| RsaI | GTAC | 1 cut(s) | 830 |
| RsaNI | GTAC | 1 cut(s) | 829 |
| RseI | CAYNNNNRTG | 1 cut(s) | 908 |
| SacI | GAGCTC | 2 cut(s) | 222, 981 |
| SaqAI | TTAA | 3 cut(s) | 174, 627, 1173 |
| SatI | GCNGC | 9 cut(s) | 76, 359, 437, 588, 657, 951, 1002, 1062, 1077 |
| Sau3AI | GATC | 5 cut(s) | 463, 942, 983, 1084, 1456 |
| Sau96I | GGNCC | 3 cut(s) | 137, 427, 774 |
| SchI | GAGTC | 2 cut(s) | 975, 1043 |
| ScrFI | CCNGG | 2 cut(s) | 682, 1073 |
| SduI | GDGCHC | 3 cut(s) | 222, 295, 981 |
| SfaNI | GCATC | 1 cut(s) | 1110 |
| SfcI | CTRYAG | 3 cut(s) | 9, 1352, 1505 |
| Sfr274I | CTCGAG | 1 cut(s) | 1031 |
| SinI | GGWCC | 2 cut(s) | 427, 774 |
| SlaI | CTCGAG | 1 cut(s) | 1031 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 908 |
| SmlI | CTYRAG | 1 cut(s) | 1031 |
| SmoI | CTYRAG | 1 cut(s) | 1031 |
| SnaBI | TACGTA | 1 cut(s) | 412 |
| SpeI | ACTAGT | 1 cut(s) | 1450 |
| SphI | GCATGC | 1 cut(s) | 931 |
| SsiI | CCGC | 3 cut(s) | 65, 404, 651 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 6 cut(s) | 344, 467, 818, 996, 1451, 1461 |
| SstI | GAGCTC | 2 cut(s) | 222, 981 |
| StyD4I | CCNGG | 2 cut(s) | 680, 1071 |
| StyI | CCWWGG | 2 cut(s) | 90, 1080 |
| TaiI | ACGT | 1 cut(s) | 414 |
| TaqI | TCGA | 2 cut(s) | 964, 1032 |
| TaqII | GACCGA | 1 cut(s) | 1003 |
| Tru1I | TTAA | 3 cut(s) | 174, 627, 1173 |
| Tru9I | TTAA | 3 cut(s) | 174, 627, 1173 |
| TscAI | CASTG | 3 cut(s) | 55, 1111, 1162 |
| TseI | GCWGC | 9 cut(s) | 75, 358, 436, 587, 656, 950, 1001, 1061, 1076 |
| TspDTI | ATGAA | 4 cut(s) | 28, 613, 823, 920 |
| TspRI | CASTG | 3 cut(s) | 55, 1111, 1162 |
| VneI | GTGCAC | 1 cut(s) | 291 |
| VpaK11BI | GGWCC | 2 cut(s) | 427, 774 |
| VspI | ATTAAT | 1 cut(s) | 174 |
| XapI | RAATTY | 6 cut(s) | 256, 476, 609, 822, 1243, 1320 |
| XceI | RCATGY | 3 cut(s) | 343, 358, 931 |
| XhoI | CTCGAG | 1 cut(s) | 1031 |
| XmiI | GTMKAC | 2 cut(s) | 336, 414 |
| XspI | CTAG | 6 cut(s) | 344, 467, 818, 996, 1451, 1461 |
| Zsp2I | ATGCAT | 1 cut(s) | 905 |