Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005076

Physical Location & Seq

Genomic Coordinates Reverse (-)

12970508 .. 12973831

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATGCAGTTTCATCTGTGGAAACTGCAGATCTCCACCCTGCTCCTACTGCATTTATTGGATCAAGTGATGGAGATTATCCGGTGATAAAATCCTTTGATGATGCCAAGACCATATGCTTTTTGGAGTCTCAAAAGCTTTGGGGCATTGCTGGTCCTATTGCCTTTAACATTTTGTGTAACTATGGTGTTAACTCCTTCACAAACATCTTTGTTGGGCATATTGGAGATTTGGAGCTCTCTGCTGTTGCAATTTCACTGTCTGTCATTGAAAATTTCTCTTTTGGATTTCTGCTTGGGATGGCAAGTGCACTTGAAACACTATGTGGGCAGGCATTTGGTGCTGGGCAAGTAGAAATGCTAGGAGTTTACATGCAACGGTCATGGATAATTCTGATTATCACATGCATTGGTCTACTACCACTTTATGTGTTCGCGACGCCAATCCTAAAACTCCTTGGCCAAGAAGCTGACATAGCCAACCTTGCTGGGAAATTCTCTATCCAAATCATCCCTCAAATGTTTTCACTAGCCATCAACTTCCCAACTCAAAAGTTCTTGCAAGCACAGAGCAAGGTTTCGGTTCTGGCATGGATTGGTTTTGCAACTTTTATCATACACATAGGAATCCTCTATGTCTTTATCACATTGTTAGGGTGGGGAACGAGTGGTGCTGCTGCAGCATTTAATCTCACGGCGTGGGGAATGTCATTCGCTCAAGTCTATTACATAGTTCATTGGTGCACAGATGGTTGGAAGGGATTGTCATGGTTAGCCTTCAAGGAACTATGGTCCTTTGCAAAACTCTCCCTCGCTTCAGCTGTAATGCTTTGCCTAGAGATTTGGTACTTCATGACCATAATTGTAATGACTGGACACCTAGATAATCCTGTTATTGCAGTTGGCTCCCTTTCAATATGCATGAATCTGAATGGTTGGGAAGGCATGTTGTTTATTGGGATCAATGCAGCAATAAGCGTTCGAGTCTCTAATGAGCTTGGATCAGCACATCCTAGAGCTGCAAAGTACTCCGTCATCGTCACGATTATGGAGTCTCTCATCATTGGAATCATTTGCGGGGGCATTATCTTGGCGGCCAAAGACAAATTTGCCATCATCTTTACTGAGAGCAAAGAGATGCAACATGCAGTTTCTCATTTAGCTTTCCTTCTCAGTATTACAATGATACTCAATAGTGTTCAGCCGGTTATTTCAGGTGTTGCTGTTGGAGGAGGGTGGCAAGCTTTGGTGGCTTACATAAACTTGTTTTGTTATTACATTGTTGGTCTCCCTCTTGGGTTTCTACTTGGTTACAGAACACATATGAGAGTGAAGGGAATTTGGATTGGTATGATATTTGGGACATCCTTGCAAACACTGATCCTCTTGTACATTGTTTACAAAACCAACTGGAACAAAGAGGTAGAACAAGCCTCGGAAAGAATGAGGCAGTGGACTGGAAAAGAACTAACAATAGTTGATCACAAAAAAAGGGGTGATCAAGAAGGTGGTGGACCTCTAATATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

510

Amino Acids

55.63

Weight (kDa)

6.2

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	53 - 213	5.5e-32	MatE
MatE	PF01554	273 - 435	3.1e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00350
fragaria_vesca	FvH4_7g14750 FvH4_7g15820 FvH4_7g16700
malus_domestica	MD01G1066100.v1.1 MD07G1134500.v1.1
prunus_persica	Prupe.2G173200_v2.0.a1
pyrus_communis	pycom07g13180
rosa_chinensis	RchiOBHm_Chr1g0358621 RchiOBHm_Chr1g0359861
rosa_laevigata	RLG00000027848 RLG00000027940
rosa_multiflora	Rmu_sc0001609.1_g000022 Rmu_sc0003191.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297750
rosa_rugosa	Rorug01G0250800 Rorug01G0262900 Rorug01G0263000 Rorug01G0273300
rosa_samantha	Rh1AG264700 Rh1AG278200 Rh1AG287400 Rh1CG248400 Rh1CG261600 Rh1CG270500 Rh1DG259800 Rh1DG282100
rosa_wichuraiana	Rw1G023420 Rw1G024690 Rw1G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	415
AccII	CGCG	1 cut(s)	437
AciI	CCGC	2 cut(s)	1077, 1094
AclWI	GGATC	4 cut(s)	70, 968, 1009, 1375
AcoI	YGGCCR	2 cut(s)	460, 1095
AcsI	RAATTY	4 cut(s)	274, 494, 1106, 1338
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	440
AdeI	CACNNNGTG	2 cut(s)	326, 699
AfaI	GTAC	3 cut(s)	848, 1028, 1391
AgsI	TTSAA	4 cut(s)	272, 317, 781, 915
AluBI	AGCT	8 cut(s)	139, 238, 470, 821, 997, 1019, 1163, 1244
AluI	AGCT	8 cut(s)	139, 238, 470, 821, 997, 1019, 1163, 1244
Alw21I	GWGCWC	3 cut(s)	240, 313, 746
Alw26I	GTCTC	4 cut(s)	135, 991, 1059, 1292
Alw44I	GTGCAC	2 cut(s)	309, 742
AlwI	GGATC	4 cut(s)	70, 968, 1009, 1375
AoxI	GGCC	2 cut(s)	460, 1095
ApaLI	GTGCAC	2 cut(s)	309, 742
ApeKI	GCWGC	5 cut(s)	674, 677, 680, 968, 1019
ApoI	RAATTY	4 cut(s)	274, 494, 1106, 1338
AspS9I	GGNCC	3 cut(s)	155, 792, 1514
AsuHPI	GGTGA	2 cut(s)	97, 1508
AvaII	GGWCC	3 cut(s)	155, 792, 1514
BaeGI	GKGCMC	2 cut(s)	313, 746
BalI	TGGCCA	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	3 cut(s)	240, 313, 746
BbvI	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BccI	CCATC	5 cut(s)	65, 295, 542, 743, 1121
BceAI	ACGGC	1 cut(s)	711
BclI	TGATCA	2 cut(s)	1480, 1498
BcoDI	GTCTC	4 cut(s)	135, 991, 1059, 1292
BfaI	CTAG	5 cut(s)	362, 530, 836, 881, 1014
BfmI	CTRYAG	2 cut(s)	27, 678
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	6 cut(s)	675, 678, 681, 969, 1020, 1095
BlsI	GCNGC	6 cut(s)	676, 679, 682, 970, 1021, 1096
BmcAI	AGTACT	1 cut(s)	1028
Bme18I	GGWCC	3 cut(s)	155, 792, 1514
BmgT120I	GGNCC	3 cut(s)	155, 792, 1514
BmiI	GGNNCC	1 cut(s)	907
BmsI	GCATC	2 cut(s)	94, 1128
BpuEI	CTTGAG	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	1292
BsaJI	CCNNGG	2 cut(s)	457, 1434
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	1204
Bse1I	ACTGG	3 cut(s)	877, 1415, 1462
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	457, 1434
BseGI	GGATG	5 cut(s)	10, 306, 510, 1009, 1364
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	1116, 1186
BseNI	ACTGG	3 cut(s)	877, 1415, 1462
BseRI	GAGGAG	1 cut(s)	1245
BseSI	GKGCMC	2 cut(s)	313, 746
BseXI	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BseYI	CCCAGC	2 cut(s)	344, 488
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	2 cut(s)	462, 1097
BsiHKAI	GWGCWC	3 cut(s)	240, 313, 746
BsiSI	CCGG	2 cut(s)	83, 1205
BslFI	GGGAC	1 cut(s)	1375
BsmAI	GTCTC	4 cut(s)	135, 991, 1059, 1292
BsmFI	GGGAC	1 cut(s)	1375
BsnI	GGCC	2 cut(s)	462, 1097
Bso31I	GGTCTC	1 cut(s)	1292
Bsp1286I	GDGCHC	3 cut(s)	240, 313, 746
Bsp1407I	TGTACA	1 cut(s)	1389
Bsp143I	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	2 cut(s)	1077, 1094
BspANI	GGCC	2 cut(s)	462, 1097
BspCNI	CTCAG	2 cut(s)	1117, 1185
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	1 cut(s)	907
BspMAI	CTGCAG	2 cut(s)	31, 682
BspPI	GGATC	4 cut(s)	70, 968, 1009, 1375
BspTNI	GGTCTC	1 cut(s)	1292
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	1389
BsrI	ACTGG	3 cut(s)	877, 1415, 1462
BssAI	RCCGGY	1 cut(s)	1204
BssECI	CCNNGG	2 cut(s)	457, 1434
BssMI	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	261, 381
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	1389
BstC8I	GCNNGC	3 cut(s)	333, 564, 1242
BstDEI	CTNAG	2 cut(s)	1125, 1172
BstF5I	GGATG	5 cut(s)	10, 306, 510, 1009, 1364
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	7 cut(s)	34, 65, 963, 1004, 1383, 1483, 1501
BstMAI	GTCTC	4 cut(s)	135, 991, 1059, 1292
BstMBI	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 341, 476, 485, 680, 1250
BstNSI	RCATGY	4 cut(s)	376, 408, 949, 1148
BstSFI	CTRYAG	2 cut(s)	27, 678
BstSLI	GKGCMC	2 cut(s)	313, 746
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	462, 1097
BtsCI	GGATG	5 cut(s)	10, 306, 510, 1009, 1364
BtsI	GCAGTG	1 cut(s)	1457
BtsIMutI	CAGTG	3 cut(s)	257, 1376, 1457
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	3 cut(s)	333, 564, 1242
CciI	TCATGA	1 cut(s)	852
Cfr10I	RCCGGY	1 cut(s)	1204
Cfr13I	GGNCC	3 cut(s)	155, 792, 1514
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	3 cut(s)	847, 1027, 1390
CviAII	CATG	9 cut(s)	373, 384, 405, 591, 768, 853, 922, 946, 1145
CviQI	GTAC	3 cut(s)	847, 1027, 1390
DdeI	CTNAG	2 cut(s)	1125, 1172
DpnI	GATC	7 cut(s)	33, 64, 962, 1003, 1382, 1482, 1500
DpnII	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
DraIII	CACNNNGTG	2 cut(s)	326, 699
EaeI	YGGCCR	2 cut(s)	460, 1095
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	1292
Eco47I	GGWCC	3 cut(s)	155, 792, 1514
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	801
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	2 cut(s)	410, 923
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	9 cut(s)	376, 387, 408, 594, 771, 856, 925, 949, 1148
FaqI	GGGAC	1 cut(s)	1375
FatI	CATG	9 cut(s)	372, 383, 404, 590, 767, 852, 921, 945, 1144
FauI	CCCGC	1 cut(s)	1070
FauNDI	CATATG	2 cut(s)	116, 1323
FbaI	TGATCA	2 cut(s)	1480, 1498
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	6 cut(s)	675, 678, 681, 969, 1020, 1095
FokI	GGATG	5 cut(s)	17, 313, 497, 996, 1351
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	6 cut(s)	675, 678, 681, 969, 1020, 1095
FspBI	CTAG	5 cut(s)	362, 530, 836, 881, 1014
GluI	GCNGC	6 cut(s)	675, 678, 681, 969, 1020, 1095
GsaI	CCCAGC	2 cut(s)	348, 492
HaeIII	GGCC	2 cut(s)	462, 1097
HapII	CCGG	2 cut(s)	83, 1205
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	9 cut(s)	376, 387, 408, 594, 771, 856, 925, 949, 1148
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	137, 1242
HinfI	GANTC	6 cut(s)	128, 627, 925, 984, 1052, 1068
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	83, 1205
HphI	GGTGA	2 cut(s)	97, 1508
Hpy166II	GTNNAC	8 cut(s)	193, 311, 370, 416, 744, 1399, 1455, 1514
Hpy188I	TCNGA	3 cut(s)	396, 930, 1438
Hpy188III	TCNNGA	4 cut(s)	436, 853, 1042, 1502
Hpy8I	GTNNAC	8 cut(s)	193, 311, 370, 416, 744, 1399, 1455, 1514
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	7 cut(s)	208, 751, 787, 935, 1178, 1327, 1499
HpyCH4III	ACNGT	2 cut(s)	261, 381
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 341, 476, 485, 680, 1250
HpyF3I	CTNAG	2 cut(s)	1125, 1172
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	9 cut(s)	376, 387, 408, 594, 771, 856, 925, 949, 1148
Ksp22I	TGATCA	2 cut(s)	1480, 1498
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
LmnI	GCTCC	3 cut(s)	49, 235, 911
Lsp1109I	GCAGC	5 cut(s)	661, 664, 692, 980, 1006
LweI	GCATC	2 cut(s)	94, 1128
MaeI	CTAG	5 cut(s)	362, 530, 836, 881, 1014
MaeIII	GTNAC	3 cut(s)	179, 1039, 1310
MalI	GATC	7 cut(s)	33, 64, 962, 1003, 1382, 1482, 1500
MboI	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	240, 313, 746
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	7 cut(s)	252, 274, 390, 494, 861, 1106, 1338
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	3 cut(s)	137, 993, 1061
MmeI	TCCRAC	2 cut(s)	734, 1207
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	2 cut(s)	410, 923
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	168, 192, 687
MslI	CAYNNNNRTG	1 cut(s)	1046
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	2 cut(s)	83, 1205
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	6 cut(s)	50, 341, 476, 485, 680, 1250
NdeI	CATATG	2 cut(s)	116, 1323
NdeII	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
NlaIII	CATG	9 cut(s)	376, 387, 408, 594, 771, 856, 925, 949, 1148
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	1039
NruI	TCGCGA	1 cut(s)	437
NsiI	ATGCAT	2 cut(s)	410, 923
NspI	RCATGY	4 cut(s)	376, 408, 949, 1148
PagI	TCATGA	1 cut(s)	852
PfeI	GAWTC	3 cut(s)	627, 925, 1068
PkrI	GCNGC	6 cut(s)	676, 679, 682, 970, 1021, 1096
PleI	GAGTC	3 cut(s)	136, 992, 1060
PpsI	GAGTC	3 cut(s)	136, 992, 1060
Psp124BI	GAGCTC	1 cut(s)	240
PspFI	CCCAGC	2 cut(s)	344, 488
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	3 cut(s)	155, 792, 1514
PstI	CTGCAG	2 cut(s)	31, 682
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	821
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	3 cut(s)	848, 1028, 1391
RsaNI	GTAC	3 cut(s)	847, 1027, 1390
RseI	CAYNNNNRTG	1 cut(s)	1046
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	168, 192, 687
SatI	GCNGC	6 cut(s)	675, 678, 681, 969, 1020, 1095
Sau3AI	GATC	7 cut(s)	31, 62, 960, 1001, 1380, 1480, 1498
Sau96I	GGNCC	3 cut(s)	155, 792, 1514
ScaI	AGTACT	1 cut(s)	1028
SchI	GAGTC	3 cut(s)	137, 993, 1061
SduI	GDGCHC	3 cut(s)	240, 313, 746
SfaNI	GCATC	2 cut(s)	94, 1128
SfcI	CTRYAG	2 cut(s)	27, 678
SinI	GGWCC	3 cut(s)	155, 792, 1514
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
Sse9I	AATT	7 cut(s)	252, 274, 390, 494, 861, 1106, 1338
SsiI	CCGC	2 cut(s)	1077, 1094
SspI	AATATT	1 cut(s)	1524
SspMI	CTAG	5 cut(s)	362, 530, 836, 881, 1014
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	261, 381
TaqI	TCGA	1 cut(s)	982
TasI	AATT	7 cut(s)	252, 274, 390, 494, 861, 1106, 1338
TatI	WGTACW	2 cut(s)	1026, 1389
TauI	GCSGC	1 cut(s)	1097
TfiI	GAWTC	3 cut(s)	627, 925, 1068
Tru1I	TTAA	3 cut(s)	168, 192, 687
Tru9I	TTAA	3 cut(s)	168, 192, 687
TscAI	CASTG	3 cut(s)	264, 1383, 1457
TseFI	GTSAC	1 cut(s)	1039
TseI	GCWGC	5 cut(s)	674, 677, 680, 968, 1019
Tsp45I	GTSAC	1 cut(s)	1039
TspDTI	ATGAA	3 cut(s)	725, 841, 938
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	3 cut(s)	264, 1383, 1457
VneI	GTGCAC	2 cut(s)	309, 742
VpaK11BI	GGWCC	3 cut(s)	155, 792, 1514
XapI	RAATTY	4 cut(s)	274, 494, 1106, 1338
XceI	RCATGY	4 cut(s)	376, 408, 949, 1148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	5 cut(s)	362, 530, 836, 881, 1014
ZrmI	AGTACT	1 cut(s)	1028
Zsp2I	ATGCAT	2 cut(s)	410, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.