AT4G00770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012879
Physical Location & Seq
Forward (+)
331157 .. 333477
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00770.1

Sequence Viewer

Length: 1323 bp
ATGGAGCTAAGGTCGAGAATGCTCAAAGACTGTCTCTTGGAAGATTCCAACTCATGTTCCTCAAACGGGTTCAAATCGATTCCCAGACGGCATCCTCTCAACCCTTTCCCAATGATACCAAAGAGGAAACAATCCAATGCATTGCAGGCTGTGATTAACGCCATCAAGAACCTCCATTCCAACACCATCAAATCCGCTCCATCGGGGATCTTACCAAGGAGCCTTTCTCGGCGGTTAGCAACCAAGAACAAAGCAGAAAACCAAGCAAGCATCACCGTTATTCGAGTCAAAGACATCGTGCGATGGCACTCGTCTAAGGACCTGCATGAGGACATATCACATTTTGAACCTCATCAGTACACAACCAAGAACACGACAACAACCACAGGATCCTCCACCACCAGCGGCACATCCTGCAGCAGTTGGTCTGACTTGGATTTTACATCGGAGTTTTTACCATCATCATGGGGAAGTAACGTTGAGGAGTGCGGTGAAAAACAGAGTGTTAAAAACAACTTACACTGCGTCGGCGAAGATTCTTGCACAGCAGTAATACTAGCCGACACTGAAGTGGGACCTGAGGAGAACTTACAGTGTGAAAAGGAGCACAACAGCCCTGTCTCAGTGTTTGAGATTCAACATGAGGAATATGACGAAACATCAGACTCTTCTTTCAGTCAATGCCTTGACAATGTGGAAAGAACCAAACAAAAGCTCATGCAAACGATTCAGCGGTTTGAGTCTTTGGCCAACATTAGTCCTTTCAATTTGGATGAATGGGGCTCAATGGATGAAGCATCTTGCATGGAAGGAGGACAAGAGACAGATACCAAGTATGATGATGATGAGAATTGTGATACTGTTGATAGAGAGAGTGAAGATGAATACAATGATGAGGTTGAAGAGAAGGCAGCACAGCTATGGAACCGAGTCAAAGAAAGACACGCCATTTGGATCCACGAAGAACATCTGATAATGGACTATTTCAGAGATGAATTGATGCAAAGGACAAACTCATTCCACGAAACTCAACACTTTGAGAACCAATTGGTATGCGAGGCAAAAGGATGGTTGCAGGGAAAGAGAGAATCAGAGCTTGAACGCGGAACAAGTGAGCAGAGGAGACAAGCATGTGCTAGAGAAATCGAAAGACGAGACTGGAATGAGAAACAGATAGAGGAGGAGCACGAAGTGGTGGTTACACAGATTGAGGAAGAACTCTTCAGCCTGTTAATGGACGAAACTTTAACAACGCTCTCTACCAAAACTGATTCCAGTCCACCTGAACATCACAAAACAGTAACATCAATGCTTAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

50.57

Weight (kDa)

4.91

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 1 cut(s) 1104
AciI CCGC 6 cut(s) 195, 232, 405, 489, 733, 1104
AclI AACGTT 1 cut(s) 477
AclWI GGATC 5 cut(s) 215, 384, 397, 949, 962
AcoI YGGCCR 1 cut(s) 747
AcuI CTGAAG 2 cut(s) 588, 1207
AdeI CACNNNGTG 1 cut(s) 1192
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 66, 328, 1234
AflII CTTAAG 1 cut(s) 1313
AgsI TTSAA 6 cut(s) 73, 347, 638, 766, 902, 1100
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AleI CACNNNNGTG 1 cut(s) 569
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 5 cut(s) 7, 715, 919, 1096, 1318
AluI AGCT 5 cut(s) 7, 715, 919, 1096, 1318
Alw21I GWGCWC 2 cut(s) 609, 1188
Alw26I GTCTC 5 cut(s) 38, 625, 815, 1117, 1149
AlwI GGATC 5 cut(s) 215, 384, 397, 949, 962
AoxI GGCC 1 cut(s) 747
ApeKI GCWGC 2 cut(s) 417, 911
ArsI GACNNNNNNTTYG 2 cut(s) 933, 965
AspS9I GGNCC 2 cut(s) 319, 575
AsuHPI GGTGA 2 cut(s) 265, 503
AvaII GGWCC 2 cut(s) 319, 575
AxyI CCTNAGG 1 cut(s) 579
BalI TGGCCA 1 cut(s) 749
BamHI GGATCC 2 cut(s) 389, 954
BanII GRGCYC 1 cut(s) 785
Bbv12I GWGCWC 2 cut(s) 609, 1188
BbvI GCAGC 2 cut(s) 429, 923
BccI CCATC 6 cut(s) 170, 194, 208, 297, 466, 1062
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 5 cut(s) 38, 625, 815, 1117, 1149
BfaI CTAG 2 cut(s) 557, 1137
BfmI CTRYAG 1 cut(s) 415
BfrI CTTAAG 1 cut(s) 1313
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 3 cut(s) 406, 418, 912
BlsI GCNGC 3 cut(s) 407, 419, 913
Bme18I GGWCC 2 cut(s) 319, 575
BmgT120I GGNCC 2 cut(s) 319, 575
BmiI GGNNCC 5 cut(s) 221, 391, 576, 926, 956
BmsI GCATC 4 cut(s) 100, 279, 806, 990
BplI GAGNNNNNCTC 2 cut(s) 211, 243
Bpu10I CCTNAGC 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 328, 1234
Bse1I ACTGG 2 cut(s) 1163, 1275
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 5 cut(s) 91, 410, 778, 796, 1073
BseLI CCNNNNNNNGG 3 cut(s) 66, 328, 1234
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 570, 636
BseNI ACTGG 2 cut(s) 1163, 1275
BseRI GAGGAG 5 cut(s) 497, 596, 1135, 1193, 1196
BseXI GCAGC 2 cut(s) 429, 923
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 1 cut(s) 749
BshVI ATCGAT 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 609, 1188
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 66, 328, 1234
BsmAI GTCTC 5 cut(s) 38, 625, 815, 1117, 1149
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 749
Bsp1286I GDGCHC 3 cut(s) 609, 785, 1188
Bsp143I GATC 3 cut(s) 207, 389, 954
BspACI CCGC 6 cut(s) 195, 232, 405, 489, 733, 1104
BspANI GGCC 1 cut(s) 749
BspCNI CTCAG 2 cut(s) 571, 635
BspDI ATCGAT 1 cut(s) 77
BspFNI CGCG 1 cut(s) 1104
BspLI GGNNCC 5 cut(s) 221, 391, 576, 926, 956
BspMAI CTGCAG 1 cut(s) 419
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 5 cut(s) 215, 384, 397, 949, 962
BspTI CTTAAG 1 cut(s) 1313
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 1163, 1275
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 3 cut(s) 207, 389, 954
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 5 cut(s) 32, 277, 594, 862, 1300
Bst6I CTCTTC 3 cut(s) 673, 897, 1226
BstAFI CTTAAG 1 cut(s) 1313
BstAPI GCANNNNNTGC 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 147, 268
BstDEI CTNAG 4 cut(s) 8, 315, 579, 622
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 5 cut(s) 91, 410, 778, 796, 1073
BstFNI CGCG 1 cut(s) 1104
BstKTI GATC 3 cut(s) 210, 392, 957
BstMAI GTCTC 5 cut(s) 38, 625, 815, 1117, 1149
BstMBI GATC 3 cut(s) 207, 389, 954
BstMWI GCNNNNNNNGC 2 cut(s) 146, 414
BstNSI RCATGY 1 cut(s) 1134
BstSFI CTRYAG 1 cut(s) 415
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 2 cut(s) 429, 923
BstX2I RGATCY 3 cut(s) 207, 389, 954
BstXI CCANNNNNNTGG 1 cut(s) 465
BstYI RGATCY 3 cut(s) 207, 389, 954
Bsu15I ATCGAT 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 1 cut(s) 749
BsuTUI ATCGAT 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 5 cut(s) 91, 410, 778, 796, 1073
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 4 cut(s) 520, 564, 599, 630
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 147, 268
Cfr13I GGNCC 2 cut(s) 319, 575
ClaI ATCGAT 1 cut(s) 77
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 358
CviAII CATG 7 cut(s) 54, 326, 465, 641, 718, 805, 1131
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 8, 315, 579, 622
DpnI GATC 3 cut(s) 209, 391, 956
DpnII GATC 3 cut(s) 207, 389, 954
DraIII CACNNNGTG 1 cut(s) 1192
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 3 cut(s) 673, 897, 1226
EarI CTCTTC 3 cut(s) 673, 897, 1226
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 785
Eco47I GGWCC 2 cut(s) 319, 575
Eco57I CTGAAG 2 cut(s) 588, 1207
Eco81I CCTNAGG 1 cut(s) 579
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 319, 575
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 7 cut(s) 57, 329, 468, 644, 721, 808, 1134
FaqI GGGAC 1 cut(s) 588
FatI CATG 7 cut(s) 53, 325, 464, 640, 717, 804, 1130
Fnu4HI GCNGC 3 cut(s) 406, 418, 912
FokI GGATG 5 cut(s) 78, 397, 785, 803, 1080
FriOI GRGCYC 1 cut(s) 785
Fsp4HI GCNGC 3 cut(s) 406, 418, 912
FspBI CTAG 2 cut(s) 557, 1137
GluI GCNGC 3 cut(s) 406, 418, 912
HaeIII GGCC 1 cut(s) 749
HgaI GACGC 1 cut(s) 514
Hin1II CATG 7 cut(s) 57, 329, 468, 644, 721, 808, 1134
HindIII AAGCTT 1 cut(s) 1316
HphI GGTGA 2 cut(s) 265, 503
Hpy166II GTNNAC 2 cut(s) 360, 1280
Hpy188I TCNGA 6 cut(s) 430, 448, 664, 972, 989, 1093
Hpy188III TCNNGA 2 cut(s) 15, 166
Hpy8I GTNNAC 2 cut(s) 360, 1280
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 2 cut(s) 803, 901
HpyCH4III ACNGT 5 cut(s) 32, 277, 594, 862, 1300
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 9 cut(s) 140, 145, 325, 417, 543, 721, 804, 1003, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 414
HpyF3I CTNAG 4 cut(s) 8, 315, 579, 622
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 7 cut(s) 57, 329, 468, 644, 721, 808, 1134
Kzo9I GATC 3 cut(s) 207, 389, 954
LmnI GCTCC 5 cut(s) 4, 202, 219, 604, 1183
Lsp1109I GCAGC 2 cut(s) 429, 923
LweI GCATC 4 cut(s) 100, 279, 806, 990
MaeI CTAG 2 cut(s) 557, 1137
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 473, 1198, 1300
MalI GATC 3 cut(s) 209, 391, 956
MbiI CCGCTC 1 cut(s) 197
MboI GATC 3 cut(s) 207, 389, 954
MboII GAAGA 8 cut(s) 53, 545, 660, 890, 914, 974, 1213, 1226
MfeI CAATTG 1 cut(s) 1046
MflI RGATCY 3 cut(s) 207, 389, 954
MhlI GDGCHC 3 cut(s) 609, 785, 1188
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 4 cut(s) 766, 850, 995, 1046
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 4 cut(s) 294, 659, 749, 939
MmeI TCCRAC 2 cut(s) 72, 204
Mox20I TGGCCA 1 cut(s) 749
Mph1103I ATGCAT 1 cut(s) 142
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 156, 507, 1232, 1247, 1314
MslI CAYNNNNRTG 3 cut(s) 463, 569, 919
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 405, 733
MspCI CTTAAG 1 cut(s) 1313
MunI CAATTG 1 cut(s) 1046
Mva1269I GAATGC 1 cut(s) 24
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 2 cut(s) 146, 414
NdeII GATC 3 cut(s) 207, 389, 954
NlaIII CATG 7 cut(s) 57, 329, 468, 644, 721, 808, 1134
NlaIV GGNNCC 5 cut(s) 221, 391, 576, 926, 956
NmeAIII GCCGAG 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 1 cut(s) 1134
OliI CACNNNNGTG 1 cut(s) 569
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 7 cut(s) 44, 79, 536, 634, 727, 1088, 1271
PkrI GCNGC 3 cut(s) 407, 419, 913
PleI GAGTC 4 cut(s) 293, 659, 748, 938
PpsI GAGTC 4 cut(s) 293, 659, 748, 938
PpuMI RGGWCCY 2 cut(s) 319, 575
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 319, 575
PspN4I GGNNCC 5 cut(s) 221, 391, 576, 926, 956
PspPI GGNCC 2 cut(s) 319, 575
PspPPI RGGWCCY 2 cut(s) 319, 575
PstI CTGCAG 1 cut(s) 419
PsuI RGATCY 3 cut(s) 207, 389, 954
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 3 cut(s) 463, 569, 919
SaqAI TTAA 5 cut(s) 156, 507, 1232, 1247, 1314
SatI GCNGC 3 cut(s) 406, 418, 912
Sau3AI GATC 3 cut(s) 207, 389, 954
Sau96I GGNCC 2 cut(s) 319, 575
SchI GAGTC 4 cut(s) 294, 659, 749, 939
SduI GDGCHC 3 cut(s) 609, 785, 1188
SfaNI GCATC 4 cut(s) 100, 279, 806, 990
SfcI CTRYAG 1 cut(s) 415
SinI GGWCC 2 cut(s) 319, 575
SmiMI CAYNNNNRTG 3 cut(s) 463, 569, 919
SmlI CTYRAG 1 cut(s) 1313
SmoI CTYRAG 1 cut(s) 1313
Sse9I AATT 4 cut(s) 766, 850, 995, 1046
SsiI CCGC 6 cut(s) 195, 232, 405, 489, 733, 1104
SspMI CTAG 2 cut(s) 557, 1137
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 5 cut(s) 32, 277, 594, 862, 1300
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 14, 77, 283, 1146
TasI AATT 4 cut(s) 766, 850, 995, 1046
TatI WGTACW 1 cut(s) 357
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 7 cut(s) 44, 79, 536, 634, 727, 1088, 1271
Tru1I TTAA 5 cut(s) 156, 507, 1232, 1247, 1314
Tru9I TTAA 5 cut(s) 156, 507, 1232, 1247, 1314
TscAI CASTG 4 cut(s) 527, 571, 599, 630
TseI GCWGC 2 cut(s) 417, 911
TspDTI ATGAA 4 cut(s) 789, 807, 897, 1008
TspRI CASTG 4 cut(s) 527, 571, 599, 630
Vha464I CTTAAG 1 cut(s) 1313
VpaK11BI GGWCC 2 cut(s) 319, 575
XagI CCTNNNNNAGG 1 cut(s) 326
XceI RCATGY 1 cut(s) 1134
XspI CTAG 2 cut(s) 557, 1137
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.