Rroxscaffold_4G00303190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012879
Physical Location & Seq
Forward (+)
23588101 .. 23590599
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303190.1

Sequence Viewer

Length: 1356 bp
ATGTGTTCTTCTAGTTCTTCATGCTCGTACAAGAATGTGCATCAGAAAAAGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAATTCCAATTCATGTTCTTCAAGTGGGTTCAAATCATTTCCAAGAAAACCACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTAGCAAGTTACATAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACTGCAGTAAAAACTCCCTCCCTTTTACCACGGAGCCTCTCACGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTCTTCAAACTGAAGTCCAAATCAGTGTGAAAGTCAAAGATATCCTACGGTGGACATCATTCCGTGACGAGAGGTTACCTCAATCTCTCTGCCGTGGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCACCGTAACAGAGTCCACAACTACTACTACCACTACTACTACTACTTGTAGTAATAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGAGGATTTTTTACCGTCTCCGTTTGGTGTAAAAATGAGATGGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCATGGAGGCTACGGCAGGGACAGCAAGATGCGGTTGAGGTGCTATTTTGTGATGAAGATGAACAAAACAGCCCAGTTTCTGTGCTTGATTTTCAATTTGGGGAAGACGATGAAGAGGCATTTTCGACTACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCACTTTGAGAGTCTTGGCAACCTAGACGCTGATTTCGACTCATGGTTGTCACCGGAAGAAGGTATCAACTTCGAAGAAGAAGAAGAAGAAGAGCATGGAATTGAAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGCTGTGAGGACGAAATGGAAGACAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGGTTTAATTGGGAGATCGTTAGCAAAGCAAAAGCTTGGATTAGTGAGGAAAATACTGGACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCATAAAGGAGGGAAGTGGCTTAACAAGTTTGAGGATGAGAAAGAGGAGTTGGCTTTACAAATCGAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTCGGTTGATCTCTTATTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

51.6

Weight (kDa)

5.22

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 343, 716
AclWI GGATC 1 cut(s) 878
AcsI RAATTY 3 cut(s) 103, 681, 1003
AcuI CTGAAG 2 cut(s) 411, 1063
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 2 cut(s) 29, 505
AfiI CCNNNNNNNGG 3 cut(s) 673, 935, 1191
AgsI TTSAA 6 cut(s) 123, 133, 386, 779, 980, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 1265, 1297
AluBI AGCT 5 cut(s) 360, 1023, 1038, 1157, 1330
AluI AGCT 5 cut(s) 360, 1023, 1038, 1157, 1330
Alw21I GWGCWC 3 cut(s) 362, 1099, 1206
Alw26I GTCTC 2 cut(s) 630, 1292
Alw44I GTGCAC 1 cut(s) 1095
AlwI GGATC 1 cut(s) 878
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 2 cut(s) 236, 573
ApoI RAATTY 3 cut(s) 103, 681, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 1181
AsuHPI GGTGA 4 cut(s) 483, 488, 656, 918
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 1 cut(s) 1181
BaeGI GKGCMC 1 cut(s) 1099
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 3 cut(s) 374, 795, 1062
Bbv12I GWGCWC 3 cut(s) 362, 1099, 1206
BbvI GCAGC 2 cut(s) 248, 585
BccI CCATC 2 cut(s) 642, 1115
BceAI ACGGC 4 cut(s) 356, 456, 713, 1289
BcgI CGANNNNNNTGC 2 cut(s) 838, 872
BcoDI GTCTC 2 cut(s) 630, 1292
BfaI CTAG 4 cut(s) 12, 207, 899, 1020
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 237, 344, 574
BlsI GCNGC 3 cut(s) 238, 345, 575
Bme18I GGWCC 1 cut(s) 1181
BmgT120I GGNCC 1 cut(s) 1181
BmiI GGNNCC 2 cut(s) 332, 1183
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 3 cut(s) 49, 248, 703
BmuI ACTGGG 1 cut(s) 752
BpiI GAAGAC 3 cut(s) 374, 795, 1062
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 68, 1220, 1331
BsaJI CCNNGG 4 cut(s) 326, 472, 609, 686
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 3 cut(s) 673, 935, 1191
Bse1I ACTGG 3 cut(s) 262, 758, 1183
Bse3DI GCAATG 1 cut(s) 583
BseDI CCNNGG 4 cut(s) 326, 472, 609, 686
BseGI GGATG 3 cut(s) 288, 1273, 1330
BseLI CCNNNNNNNGG 3 cut(s) 673, 935, 1191
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 262, 758, 1183
BseRI GAGGAG 1 cut(s) 1292
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 2 cut(s) 248, 585
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 362, 1099, 1206
BsiSI CCGG 1 cut(s) 929
BslFI GGGAC 2 cut(s) 717, 1209
BslI CCNNNNNNNGG 3 cut(s) 673, 935, 1191
BsmAI GTCTC 2 cut(s) 630, 1292
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 2 cut(s) 717, 1209
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 3 cut(s) 362, 1099, 1206
Bsp143I GATC 4 cut(s) 227, 870, 1137, 1339
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 2 cut(s) 343, 716
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 332, 1183
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 878
BspQI GCTCTTC 1 cut(s) 960
BspT104I TTCGAA 1 cut(s) 948
BsrDI GCAATG 1 cut(s) 583
BsrI ACTGG 3 cut(s) 262, 758, 1183
BssECI CCNNGG 4 cut(s) 326, 472, 609, 686
BssMI GATC 4 cut(s) 227, 870, 1137, 1339
BssT1I CCWWGG 1 cut(s) 686
Bst4CI ACNGT 5 cut(s) 429, 520, 599, 624, 999
Bst6I CTCTTC 3 cut(s) 792, 960, 975
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 3 cut(s) 326, 472, 686
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 288, 1273, 1330
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 230, 873, 1140, 1342
BstMAI GTCTC 2 cut(s) 630, 1292
BstMBI GATC 4 cut(s) 227, 870, 1137, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 79, 706
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1099
BstV1I GCAGC 2 cut(s) 248, 585
BstV2I GAAGAC 3 cut(s) 374, 795, 1062
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 3 cut(s) 326, 472, 686
BtsCI GGATG 3 cut(s) 288, 1273, 1330
BtsIMutI CAGTG 2 cut(s) 409, 604
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 1181
CseI GACGC 1 cut(s) 911
Csp6I GTAC 2 cut(s) 28, 504
CviAII CATG 8 cut(s) 21, 114, 271, 363, 668, 687, 918, 971
CviQI GTAC 2 cut(s) 28, 504
DdeI CTNAG 1 cut(s) 253
DpnI GATC 4 cut(s) 229, 872, 1139, 1341
DpnII GATC 4 cut(s) 227, 870, 1137, 1339
DraIII CACNNNGTG 1 cut(s) 670
Eam1104I CTCTTC 3 cut(s) 792, 960, 975
EarI CTCTTC 3 cut(s) 792, 960, 975
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 1181
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 2 cut(s) 411, 1063
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 681
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 686
EcoT22I ATGCAT 1 cut(s) 1236
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 8 cut(s) 24, 117, 274, 366, 671, 690, 921, 974
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 2 cut(s) 717, 1209
FatI CATG 8 cut(s) 20, 113, 270, 362, 667, 686, 917, 970
Fnu4HI GCNGC 3 cut(s) 237, 344, 574
FokI GGATG 3 cut(s) 275, 1280, 1337
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 574
FspBI CTAG 4 cut(s) 12, 207, 899, 1020
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 574
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 929
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 671, 690, 921, 974
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1155
HinfI GANTC 4 cut(s) 379, 527, 886, 914
HpaII CCGG 1 cut(s) 929
HphI GGTGA 4 cut(s) 483, 488, 656, 918
Hpy166II GTNNAC 3 cut(s) 432, 531, 1097
Hpy188I TCNGA 2 cut(s) 45, 1013
Hpy188III TCNNGA 2 cut(s) 271, 1297
Hpy8I GTNNAC 3 cut(s) 432, 531, 1097
HpyAV CCTTC 2 cut(s) 277, 929
HpyCH4III ACNGT 5 cut(s) 429, 520, 599, 624, 999
HpyCH4V TGCA 6 cut(s) 40, 165, 302, 865, 1097, 1234
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 706
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 671, 690, 921, 974
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 227, 870, 1137, 1339
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 9 cut(s) 55, 275, 663, 686, 771, 942, 1044, 1066, 1164
Lsp1109I GCAGC 2 cut(s) 248, 585
LweI GCATC 3 cut(s) 49, 248, 703
MaeI CTAG 4 cut(s) 12, 207, 899, 1020
MaeIII GTNAC 6 cut(s) 213, 443, 453, 520, 593, 924
MalI GATC 4 cut(s) 229, 872, 1139, 1341
MboI GATC 4 cut(s) 227, 870, 1137, 1339
MhlI GDGCHC 3 cut(s) 362, 1099, 1206
MlyI GAGTC 4 cut(s) 388, 536, 895, 908
MmeI TCCRAC 1 cut(s) 1050
Mph1103I ATGCAT 1 cut(s) 1236
MseI TTAA 3 cut(s) 1025, 1128, 1254
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 1 cut(s) 929
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 79, 706
NcoI CCATGG 1 cut(s) 686
NdeII GATC 4 cut(s) 227, 870, 1137, 1339
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 671, 690, 921, 974
NlaIV GGNNCC 2 cut(s) 332, 1183
NmuCI GTSAC 3 cut(s) 443, 593, 924
NsiI ATGCAT 1 cut(s) 1236
NspV TTCGAA 1 cut(s) 948
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 960
PcsI WCGNNNNNNNCGW 2 cut(s) 909, 1302
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 575
PleI GAGTC 4 cut(s) 387, 535, 894, 908
PpsI GAGTC 4 cut(s) 387, 535, 894, 908
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 332, 1183
PspPI GGNCC 1 cut(s) 1181
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 764
RsaI GTAC 2 cut(s) 29, 505
RsaNI GTAC 2 cut(s) 28, 504
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 3 cut(s) 1025, 1128, 1254
SatI GCNGC 3 cut(s) 237, 344, 574
Sau3AI GATC 4 cut(s) 227, 870, 1137, 1339
Sau96I GGNCC 1 cut(s) 1181
SchI GAGTC 4 cut(s) 388, 536, 895, 908
SduI GDGCHC 3 cut(s) 362, 1099, 1206
SfaNI GCATC 3 cut(s) 49, 248, 703
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 83, 1199, 1310
SmoI CTYRAG 3 cut(s) 83, 1199, 1310
SsiI CCGC 2 cut(s) 343, 716
SspMI CTAG 4 cut(s) 12, 207, 899, 1020
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 5 cut(s) 429, 520, 599, 624, 999
TaqI TCGA 4 cut(s) 809, 912, 948, 1296
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1025, 1128, 1254
Tru9I TTAA 3 cut(s) 1025, 1128, 1254
TscAI CASTG 2 cut(s) 409, 604
TseFI GTSAC 3 cut(s) 443, 593, 924
TseI GCWGC 2 cut(s) 236, 573
Tsp45I GTSAC 3 cut(s) 443, 593, 924
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 753, 759, 810
TspGWI ACGGA 3 cut(s) 343, 431, 618
TspRI CASTG 2 cut(s) 409, 604
VneI GTGCAC 1 cut(s) 1095
VpaK11BI GGWCC 1 cut(s) 1181
XapI RAATTY 3 cut(s) 103, 681, 1003
XspI CTAG 4 cut(s) 12, 207, 899, 1020
Zsp2I ATGCAT 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.