Rmu_sc0011547.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011547.1
OG0012879
Physical Location & Seq
Reverse (-)
2903 .. 5024
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011547.1_g000002.1.cds

Sequence Viewer

Length: 1359 bp
atgtgttcttctagttcttcatgcttatacaagaatgtggatcagaaaaagccttttccaatagagcgcaggccaacaatgctcaaggatttcctcaatgaaaattccaattcatgttcttcaagtgtgttcaaatcatttccaagaaaaccacaacttgattgcaaagcaagaaacccaaatcccaaacccaataccaccattactagcaagttacatagaagcagatcaaaagcagcatctaccacaatctcagcattccagtccttcatgaatgtggtaaaaaacatccaattttctgcagtaaaaactccctcccttttaccacggaccctctcacggcggctgtccaaaaagagctcatggtcaaggaagcagagtcttcaaactcaagtccaaatcagtgtgaaagtcaaagatatactacggtggacatcattccgcgatgagaggttagctcaatctctgccgtgggatttcgcttcttcacctcaccattgtaccacagccaccaccgtaacagagtccacaacaactgctactactacttgtagtaatagcagcaatgggtcaagttggtgtgacagtgattttaccgcggagtttttaccgtctccgtttggtggtaaaaatgagatgggtaaaaagtattcaccatgtgtcggcaggaattccatggaggctacggcagggacagcaagatgcggtgaattggaccccaaggaagaggtgctattttgtgatgaagatgaacaacacagcccagtttctgtgctcgattttcaatttggggaagacgatgaagaggcattttcgactacttttgaccaaagccttgccaatgtggagagaacgaaagaattgcttatgcaaaggatcaagcactttgagagtcttgccaacctagacgctgatttcgactcatggttgtcaccggaagaaggtatcagcttcgaagaagaagaagaagagcatggaattgaagagagggcattggaactgttgaattttgtcagagcaactagcttaaaaccagagagctgtgaggacgaaatggaagataaactattgttggatttcttcagggaagaattgggtgcacaaagaaattatcaaacagatgatgggtttaattgggagatcgttagcaaagcaaaagcttggattagtgaggaaaatactggaccctttgagtggggacttgaccacaagaaagaagcctttgttagagatatgcataaaggagggaagtggcttaacaagtttgaggatgagaaagaggagttggctttacaaatcgagactgccgtgcttgagttcttggtggatgagctttcggttgatctcttattgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

51.39

Weight (kDa)

5.06

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 444, 599
AciI CCGC 5 cut(s) 343, 442, 597, 599, 705
AclWI GGATC 2 cut(s) 48, 884
AcsI RAATTY 3 cut(s) 103, 670, 1006
AcuI CTGAAG 1 cut(s) 1066
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 5 cut(s) 339, 623, 662, 941, 1194
AgsI TTSAA 6 cut(s) 123, 133, 386, 785, 983, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AluBI AGCT 7 cut(s) 360, 458, 951, 1026, 1041, 1160, 1333
AluI AGCT 7 cut(s) 360, 458, 951, 1026, 1041, 1160, 1333
Alw21I GWGCWC 3 cut(s) 362, 777, 1102
Alw26I GTCTC 2 cut(s) 618, 1295
Alw44I GTGCAC 1 cut(s) 1098
AlwI GGATC 2 cut(s) 48, 884
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1098
ApeKI GCWGC 2 cut(s) 236, 561
ApoI RAATTY 3 cut(s) 103, 670, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 3 cut(s) 330, 715, 1184
AsuHPI GGTGA 5 cut(s) 480, 485, 645, 719, 924
AsuII TTCGAA 1 cut(s) 954
AvaII GGWCC 3 cut(s) 330, 715, 1184
BaeGI GKGCMC 1 cut(s) 1102
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 374, 801
Bbv12I GWGCWC 3 cut(s) 362, 777, 1102
BbvI GCAGC 2 cut(s) 248, 573
BccI CCATC 2 cut(s) 631, 1118
BceAI ACGGC 4 cut(s) 356, 454, 702, 1292
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BcoDI GTCTC 2 cut(s) 618, 1295
BfaI CTAG 4 cut(s) 12, 207, 905, 1023
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 237, 344, 562
BlsI GCNGC 3 cut(s) 238, 345, 563
Bme18I GGWCC 3 cut(s) 330, 715, 1184
BmgT120I GGNCC 3 cut(s) 330, 715, 1184
BmiI GGNNCC 3 cut(s) 332, 717, 1186
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 2 cut(s) 248, 692
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 2 cut(s) 374, 801
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 954
BpuEI CTTGAG 3 cut(s) 68, 375, 1334
BsaJI CCNNGG 5 cut(s) 326, 470, 597, 675, 720
BsaWI WCCGGW 1 cut(s) 934
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 623, 662, 941, 1194
Bse1I ACTGG 3 cut(s) 262, 764, 1186
Bse3DI GCAATG 1 cut(s) 571
BseDI CCNNGG 5 cut(s) 326, 470, 597, 675, 720
BseGI GGATG 3 cut(s) 288, 1276, 1333
BseLI CCNNNNNNNGG 5 cut(s) 339, 623, 662, 941, 1194
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 262, 764, 1186
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 1 cut(s) 1102
BseXI GCAGC 2 cut(s) 248, 573
Bsh1236I CGCG 2 cut(s) 444, 599
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 362, 777, 1102
BsiSI CCGG 1 cut(s) 935
BslFI GGGAC 2 cut(s) 706, 1212
BslI CCNNNNNNNGG 5 cut(s) 339, 623, 662, 941, 1194
BsmAI GTCTC 2 cut(s) 618, 1295
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 706, 1212
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 954
Bsp1286I GDGCHC 3 cut(s) 362, 777, 1102
Bsp143I GATC 5 cut(s) 40, 227, 876, 1140, 1342
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 5 cut(s) 343, 442, 597, 599, 705
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 2 cut(s) 444, 599
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 332, 717, 1186
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 2 cut(s) 48, 884
BspQI GCTCTTC 1 cut(s) 963
BspT104I TTCGAA 1 cut(s) 954
BsrDI GCAATG 1 cut(s) 571
BsrI ACTGG 3 cut(s) 262, 764, 1186
BssECI CCNNGG 5 cut(s) 326, 470, 597, 675, 720
BssMI GATC 5 cut(s) 40, 227, 876, 1140, 1342
BssT1I CCWWGG 2 cut(s) 675, 720
Bst4CI ACNGT 5 cut(s) 429, 517, 587, 612, 1002
Bst6I CTCTTC 4 cut(s) 720, 798, 963, 978
BstBI TTCGAA 1 cut(s) 954
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 4 cut(s) 326, 470, 597, 675
BstF5I GGATG 3 cut(s) 288, 1276, 1333
BstFNI CGCG 2 cut(s) 444, 599
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 5 cut(s) 43, 230, 879, 1143, 1345
BstMAI GTCTC 2 cut(s) 618, 1295
BstMBI GATC 5 cut(s) 40, 227, 876, 1140, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 79, 695
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1102
BstUI CGCG 2 cut(s) 444, 599
BstV1I GCAGC 2 cut(s) 248, 573
BstV2I GAAGAC 2 cut(s) 374, 801
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 4 cut(s) 326, 470, 597, 675
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 288, 1276, 1333
BtsIMutI CAGTG 2 cut(s) 409, 592
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 330, 715, 1184
Cfr42I CCGCGG 1 cut(s) 600
CseI GACGC 1 cut(s) 917
Csp6I GTAC 1 cut(s) 501
CviAII CATG 8 cut(s) 21, 114, 271, 363, 657, 676, 924, 974
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 253
DpnI GATC 5 cut(s) 42, 229, 878, 1142, 1344
DpnII GATC 5 cut(s) 40, 227, 876, 1140, 1342
DraIII CACNNNGTG 1 cut(s) 659
Eam1104I CTCTTC 4 cut(s) 720, 798, 963, 978
EarI CTCTTC 4 cut(s) 720, 798, 963, 978
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 675, 720
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 3 cut(s) 330, 715, 1184
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1066
EcoICRI GAGCTC 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 670
EcoT14I CCWWGG 2 cut(s) 675, 720
EcoT22I ATGCAT 1 cut(s) 1239
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 675, 720
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 8 cut(s) 24, 117, 274, 366, 660, 679, 927, 977
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 2 cut(s) 706, 1212
FatI CATG 8 cut(s) 20, 113, 270, 362, 656, 675, 923, 973
Fnu4HI GCNGC 3 cut(s) 237, 344, 562
FokI GGATG 3 cut(s) 275, 1283, 1340
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 562
FspBI CTAG 4 cut(s) 12, 207, 905, 1023
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 562
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 935
HgaI GACGC 1 cut(s) 917
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 660, 679, 927, 977
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1158
HinfI GANTC 4 cut(s) 379, 524, 892, 920
HpaII CCGG 1 cut(s) 935
HphI GGTGA 5 cut(s) 480, 485, 645, 719, 924
Hpy166II GTNNAC 3 cut(s) 432, 528, 1100
Hpy188I TCNGA 2 cut(s) 45, 1016
Hpy188III TCNNGA 2 cut(s) 271, 1300
Hpy8I GTNNAC 3 cut(s) 432, 528, 1100
HpyAV CCTTC 2 cut(s) 277, 935
HpyCH4III ACNGT 5 cut(s) 429, 517, 587, 612, 1002
HpyCH4V TGCA 5 cut(s) 165, 302, 871, 1100, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 695
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 660, 679, 927, 977
HspAI GCGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 600
Kzo9I GATC 5 cut(s) 40, 227, 876, 1140, 1342
LguI GCTCTTC 1 cut(s) 963
LpnPI CCDG 9 cut(s) 55, 275, 652, 675, 777, 948, 1047, 1069, 1167
Lsp1109I GCAGC 2 cut(s) 248, 573
LweI GCATC 2 cut(s) 248, 692
MaeI CTAG 4 cut(s) 12, 207, 905, 1023
MaeIII GTNAC 4 cut(s) 213, 517, 581, 930
MalI GATC 5 cut(s) 42, 229, 878, 1142, 1344
MboI GATC 5 cut(s) 40, 227, 876, 1140, 1342
MhlI GDGCHC 3 cut(s) 362, 777, 1102
MlyI GAGTC 4 cut(s) 388, 533, 901, 914
MmeI TCCRAC 1 cut(s) 1053
Mph1103I ATGCAT 1 cut(s) 1239
MseI TTAA 3 cut(s) 1028, 1131, 1257
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 1 cut(s) 935
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 2 cut(s) 444, 599
MwoI GCNNNNNNNGC 2 cut(s) 79, 695
NcoI CCATGG 1 cut(s) 675
NdeII GATC 5 cut(s) 40, 227, 876, 1140, 1342
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 660, 679, 927, 977
NlaIV GGNNCC 3 cut(s) 332, 717, 1186
NmuCI GTSAC 2 cut(s) 581, 930
NsiI ATGCAT 1 cut(s) 1239
NspV TTCGAA 1 cut(s) 954
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 2 cut(s) 915, 1305
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 563
PleI GAGTC 4 cut(s) 387, 532, 900, 914
PpsI GAGTC 4 cut(s) 387, 532, 900, 914
Psp124BI GAGCTC 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 332, 717, 1186
PspPI GGNCC 3 cut(s) 330, 715, 1184
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 770
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 3 cut(s) 1028, 1131, 1257
SatI GCNGC 3 cut(s) 237, 344, 562
Sau3AI GATC 5 cut(s) 40, 227, 876, 1140, 1342
Sau96I GGNCC 3 cut(s) 330, 715, 1184
SchI GAGTC 4 cut(s) 388, 533, 901, 914
SduI GDGCHC 3 cut(s) 362, 777, 1102
SfaNI GCATC 2 cut(s) 248, 692
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 954
SgrBI CCGCGG 1 cut(s) 600
SinI GGWCC 3 cut(s) 330, 715, 1184
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 83, 390, 1313
SmoI CTYRAG 3 cut(s) 83, 390, 1313
SsiI CCGC 5 cut(s) 343, 442, 597, 599, 705
SspMI CTAG 4 cut(s) 12, 207, 905, 1023
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 2 cut(s) 675, 720
TaaI ACNGT 5 cut(s) 429, 517, 587, 612, 1002
TaqI TCGA 5 cut(s) 777, 815, 918, 954, 1299
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1028, 1131, 1257
Tru9I TTAA 3 cut(s) 1028, 1131, 1257
TscAI CASTG 2 cut(s) 409, 592
TseFI GTSAC 2 cut(s) 581, 930
TseI GCWGC 2 cut(s) 236, 561
Tsp45I GTSAC 2 cut(s) 581, 930
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 759, 765, 816
TspGWI ACGGA 2 cut(s) 343, 606
TspRI CASTG 2 cut(s) 409, 592
VneI GTGCAC 1 cut(s) 1098
VpaK11BI GGWCC 3 cut(s) 330, 715, 1184
XapI RAATTY 3 cut(s) 103, 670, 1006
XspI CTAG 4 cut(s) 12, 207, 905, 1023
Zsp2I ATGCAT 1 cut(s) 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.