RLG00000028359

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012879
Physical Location & Seq
Forward (+)
21801523 .. 21804246
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028359

Sequence Viewer

Length: 1353 bp
ATGTGTTCTTCTAGTACTTCATGCTCATACAAGAATGTGCATCAGAAAATGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAATTCCAATTCATGTTCTTCAAGTGGGTTCAAATCATTTCCAAGAAAACTACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTACCAAGTTACATAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACTGCAGTAAAAACTCCGTCCCTTTTACCACGGAGCCTCTCACGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTCTTCAAACTCAAGTCCAAATCAGTGTGAAAGTCAAAGATATCCTACGGTGGACATCATTCCGCGACGAGAGGTTACCTCAATCTCTGCCGTGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCATCGTAACAGAGTCCACGACTACTACTACTTGTAGTAATAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGCTGAGTTTTTACCGTCTCCGTTTGGTGGTGAAAATGAGATGGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCATGGAGGCTCCGGCAGGGACAGCAAGATGCGGTGAATTGGACCCCAAGGTTGAGGTGCTATTTTGTGATGAAGATGAACAACACAGCCCAGTTTCTGTGCTCGATTTTCAATTTGGGGAAGATGATGAAGAGACGTTTTCGACTACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCAGTTTGAGAGTCTTGCCAACTTAGACGCTGATTTCAACTCATGGTTGTCACCGGAAGAAGGTATCTACTTCGAAGGAGAAGAAGAAGAGCATGGAATTGAAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGCTGTGAGGACGAAATGGAAGATAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGGTTTAATTGGGAGATCGTTAGCAAAGCAAAAGCTTGGATTAGTGAGGAAAATACTGCACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCATAAAGGTGGGAAGTGGCTTAACAAGTTTGAGGATGAGAAAGAGGAGTTGGCTTTAGAAATCGAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTCGGTTGATCTCTTATTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

51.3

Weight (kDa)

5.05

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 444
AciI CCGC 4 cut(s) 343, 442, 591, 699
AclWI GGATC 1 cut(s) 878
AcsI RAATTY 3 cut(s) 103, 664, 1000
AcuI CTGAAG 1 cut(s) 1060
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 16, 502
AfiI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1188
AgsI TTSAA 7 cut(s) 123, 133, 386, 779, 913, 977, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
AluBI AGCT 5 cut(s) 360, 1020, 1035, 1154, 1327
AluI AGCT 5 cut(s) 360, 1020, 1035, 1154, 1327
Alw21I GWGCWC 4 cut(s) 362, 771, 1096, 1203
Alw26I GTCTC 3 cut(s) 612, 794, 1289
Alw44I GTGCAC 1 cut(s) 1092
AlwI GGATC 1 cut(s) 878
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1092
ApeKI GCWGC 2 cut(s) 236, 555
ApoI RAATTY 3 cut(s) 103, 664, 1000
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 709
AsuHPI GGTGA 6 cut(s) 480, 485, 632, 639, 713, 918
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 1 cut(s) 709
BaeGI GKGCMC 1 cut(s) 1096
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 4 cut(s) 362, 771, 1096, 1203
BbvI GCAGC 2 cut(s) 248, 567
BccI CCATC 3 cut(s) 521, 625, 1112
BceAI ACGGC 3 cut(s) 356, 454, 1286
BcgI CGANNNNNNTGC 2 cut(s) 838, 872
BcoDI GTCTC 3 cut(s) 612, 794, 1289
BfaI CTAG 2 cut(s) 12, 1017
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 237, 344, 556
BlsI GCNGC 3 cut(s) 238, 345, 557
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 709
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 3 cut(s) 332, 678, 711
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 3 cut(s) 49, 248, 686
BmuI ACTGGG 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 4 cut(s) 68, 375, 1217, 1328
BsaJI CCNNGG 4 cut(s) 326, 470, 669, 714
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1188
Bse1I ACTGG 2 cut(s) 262, 758
Bse3DI GCAATG 1 cut(s) 565
BseDI CCNNGG 4 cut(s) 326, 470, 669, 714
BseGI GGATG 3 cut(s) 288, 1270, 1327
BseLI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1188
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 2 cut(s) 267, 585
BseNI ACTGG 2 cut(s) 262, 758
BseRI GAGGAG 1 cut(s) 1289
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 2 cut(s) 248, 567
BsgI GTGCAG 1 cut(s) 1161
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 4 cut(s) 362, 771, 1096, 1203
BsiSI CCGG 2 cut(s) 680, 929
BslFI GGGAC 3 cut(s) 301, 700, 1206
BslI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1188
BsmAI GTCTC 3 cut(s) 612, 794, 1289
BsmBI CGTCTC 2 cut(s) 612, 794
BsmFI GGGAC 3 cut(s) 301, 700, 1206
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 4 cut(s) 362, 771, 1096, 1203
Bsp143I GATC 4 cut(s) 227, 870, 1134, 1336
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 4 cut(s) 343, 442, 591, 699
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 266, 586
BspFNI CGCG 1 cut(s) 444
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 332, 678, 711
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 878
BspQI GCTCTTC 1 cut(s) 957
BspT104I TTCGAA 1 cut(s) 948
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 2 cut(s) 262, 758
BssECI CCNNGG 4 cut(s) 326, 470, 669, 714
BssMI GATC 4 cut(s) 227, 870, 1134, 1336
BssT1I CCWWGG 2 cut(s) 669, 714
Bst4CI ACNGT 4 cut(s) 429, 581, 606, 996
Bst6I CTCTTC 3 cut(s) 792, 957, 972
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 253, 594, 898
BstDSI CCRYGG 3 cut(s) 326, 470, 669
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 288, 1270, 1327
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 230, 873, 1137, 1339
BstMAI GTCTC 3 cut(s) 612, 794, 1289
BstMBI GATC 4 cut(s) 227, 870, 1134, 1336
BstMWI GCNNNNNNNGC 2 cut(s) 79, 689
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1096
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 248, 567
BstV2I GAAGAC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 3 cut(s) 326, 470, 669
BtsCI GGATG 3 cut(s) 288, 1270, 1327
BtsIMutI CAGTG 2 cut(s) 409, 586
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 709
CseI GACGC 1 cut(s) 911
Csp6I GTAC 2 cut(s) 15, 501
CviAII CATG 8 cut(s) 21, 114, 271, 363, 651, 670, 918, 968
CviQI GTAC 2 cut(s) 15, 501
DdeI CTNAG 3 cut(s) 253, 594, 898
DpnI GATC 4 cut(s) 229, 872, 1136, 1338
DpnII GATC 4 cut(s) 227, 870, 1134, 1336
DraIII CACNNNGTG 1 cut(s) 653
Eam1104I CTCTTC 3 cut(s) 792, 957, 972
EarI CTCTTC 3 cut(s) 792, 957, 972
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 669, 714
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 709
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1060
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 664
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 669, 714
EcoT22I ATGCAT 1 cut(s) 1233
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 669, 714
Esp3I CGTCTC 2 cut(s) 612, 794
FaeI CATG 8 cut(s) 24, 117, 274, 366, 654, 673, 921, 971
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 3 cut(s) 301, 700, 1206
FatI CATG 8 cut(s) 20, 113, 270, 362, 650, 669, 917, 967
Fnu4HI GCNGC 3 cut(s) 237, 344, 556
FokI GGATG 3 cut(s) 275, 1277, 1334
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 556
FspBI CTAG 2 cut(s) 12, 1017
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 556
HaeIII GGCC 1 cut(s) 73
HapII CCGG 2 cut(s) 680, 929
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 654, 673, 921, 971
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1152
HinfI GANTC 3 cut(s) 379, 524, 886
HpaII CCGG 2 cut(s) 680, 929
HphI GGTGA 6 cut(s) 480, 485, 632, 639, 713, 918
Hpy166II GTNNAC 3 cut(s) 432, 528, 1094
Hpy188I TCNGA 2 cut(s) 45, 1010
Hpy188III TCNNGA 2 cut(s) 271, 1294
Hpy8I GTNNAC 3 cut(s) 432, 528, 1094
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 277, 929, 944
HpyCH4III ACNGT 4 cut(s) 429, 581, 606, 996
HpyCH4IV ACGT 1 cut(s) 803
HpyCH4V TGCA 7 cut(s) 40, 165, 302, 865, 1094, 1178, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 689
HpyF3I CTNAG 3 cut(s) 253, 594, 898
HpySE526I ACGT 1 cut(s) 803
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 654, 673, 921, 971
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 227, 870, 1134, 1336
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 2 cut(s) 330, 682
LpnPI CCDG 9 cut(s) 55, 275, 646, 669, 693, 771, 942, 1041, 1063
Lsp1109I GCAGC 2 cut(s) 248, 567
LweI GCATC 3 cut(s) 49, 248, 686
MaeI CTAG 2 cut(s) 12, 1017
MaeII ACGT 1 cut(s) 803
MaeIII GTNAC 5 cut(s) 213, 453, 517, 575, 924
MalI GATC 4 cut(s) 229, 872, 1136, 1338
MboI GATC 4 cut(s) 227, 870, 1134, 1336
MhlI GDGCHC 4 cut(s) 362, 771, 1096, 1203
MlyI GAGTC 3 cut(s) 388, 533, 895
MmeI TCCRAC 1 cut(s) 1047
Mph1103I ATGCAT 1 cut(s) 1233
MseI TTAA 3 cut(s) 1022, 1125, 1251
MslI CAYNNNNRTG 2 cut(s) 275, 1236
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 2 cut(s) 680, 929
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 79, 689
NcoI CCATGG 1 cut(s) 669
NdeII GATC 4 cut(s) 227, 870, 1134, 1336
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 654, 673, 921, 971
NlaIV GGNNCC 3 cut(s) 332, 678, 711
NmuCI GTSAC 2 cut(s) 575, 924
NsiI ATGCAT 1 cut(s) 1233
NspV TTCGAA 1 cut(s) 948
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 1299
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 557
PleI GAGTC 3 cut(s) 387, 532, 894
PpsI GAGTC 3 cut(s) 387, 532, 894
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 332, 678, 711
PspPI GGNCC 1 cut(s) 709
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 764
RsaI GTAC 2 cut(s) 16, 502
RsaNI GTAC 2 cut(s) 15, 501
RseI CAYNNNNRTG 2 cut(s) 275, 1236
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 3 cut(s) 1022, 1125, 1251
SatI GCNGC 3 cut(s) 237, 344, 556
Sau3AI GATC 4 cut(s) 227, 870, 1134, 1336
Sau96I GGNCC 1 cut(s) 709
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 3 cut(s) 388, 533, 895
SduI GDGCHC 4 cut(s) 362, 771, 1096, 1203
SfaNI GCATC 3 cut(s) 49, 248, 686
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 1 cut(s) 709
SmiMI CAYNNNNRTG 2 cut(s) 275, 1236
SmlI CTYRAG 4 cut(s) 83, 390, 1196, 1307
SmoI CTYRAG 4 cut(s) 83, 390, 1196, 1307
SsiI CCGC 4 cut(s) 343, 442, 591, 699
SspMI CTAG 2 cut(s) 12, 1017
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 2 cut(s) 669, 714
TaaI ACNGT 4 cut(s) 429, 581, 606, 996
TaiI ACGT 1 cut(s) 806
TaqI TCGA 4 cut(s) 771, 809, 948, 1293
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1022, 1125, 1251
Tru9I TTAA 3 cut(s) 1022, 1125, 1251
TscAI CASTG 2 cut(s) 409, 586
TseFI GTSAC 2 cut(s) 575, 924
TseI GCWGC 2 cut(s) 236, 555
Tsp45I GTSAC 2 cut(s) 575, 924
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 753, 759, 810
TspGWI ACGGA 3 cut(s) 303, 343, 600
TspRI CASTG 2 cut(s) 409, 586
VneI GTGCAC 1 cut(s) 1092
VpaK11BI GGWCC 1 cut(s) 709
XapI RAATTY 3 cut(s) 103, 664, 1000
XspI CTAG 2 cut(s) 12, 1017
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.