FvH4_7g12980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012879
Physical Location & Seq
Reverse (-)
11716139 .. 11719193
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12980.t1

Sequence Viewer

Length: 1332 bp
ATGTGTTCTTCTAGTGCTTCATGTTCATACCAAAATGTACATCAGAAAAAGCCTTTCCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAACTCCAATTCATGTTCTTCAAGTGGTTTCAAATCGTTTCCAAGAAAACCAGAGCTTGATTGCAAAGCAAGCAACCCAAATCCAACCGCAACCATTACTAGCAAGTTACAAAGAAGCAGATCAAAAGCAGCATCCACCACAATCTCAGCATTCCAGTCCATCATGAACGCAGTAAAAAACATCCAATTCACCGCAGTCAAAACTCCCTCCCTTTTACCGCGGAGCCTCTCACGGCGGCTTTCAAAAAGAAGCTCATGGTCAAGGAAGCAGTCTCTCCAAACTCAAGTCCAAATCAGTGTCAAAGTCAAAGATATCCTACGGTGGACATCTTTCCGCGACGAGAGGTTACCGCAATCTCTGCCGTGGGATTTCGCTTCTTCACCCCACCATTGCACCACAGCCACCACCGTAACAGACACCACAACAACTACTACTACTTGTAGTAACAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGCGGAGTTTTTACAGTCTCCATGTGATGGTGAAAATGAGATGGGTAAAAAATATTCACCATGTGTCGGCAGAGTTTCCATGGAAGCTACGGCAGGGCCAGCGAGATGCAGTGAATTGGACCCCAAGGTTGAGGTACTAAGTTGTGATGAAGATGAGCAACACAGCCCGGTTTCTGTGCTCAATTTTCAATTTGGGGAAGACGAGGAAGAGACGTTTTCGACTACTTTCGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGTAATGCTTATGCAGAGACTCAAGCAATTTGAGGGTCTTGCCAACCTAGACAACTCATGGTTGTCACCGGAAGAAGGTCTCTACTATGAAGAAGAAGCAGGAGAGCACGAAATTGAAGAGAGAGCAATGGAGATGTTGAATCATGTCAAAGAAACCAGCTTGACACCACTCTACGAGGACAGTATGGAAGATAAACTCTTGTTGGATTTCTTCAGAGAAGAAATGGGTGCACAAAGAAATGATCAAACTGAAGATGGGTTTGATTGGGAGATCATCAGCAAAGCAAAAGCTTGGATTAGTGGGGAAAATGTTGCACCCTTTGAGTGGGGACTAGAGCACAAGAAAGAAGGCATTGTTAGAAACATGCATAAAGGAGGGAAGTGGATTAACAAGTTTGAGGATGAGCAAGAGGAGTTGGCTATGGAAATACAGACTGCCGTGCTTGAGTACTTGGTGGATGAACTTTCGGTTGATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

50.18

Weight (kDa)

4.95

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1330
AccB7I CCANNNNNTGG 1 cut(s) 614
AccII CGCG 3 cut(s) 322, 438, 590
AciI CCGC 9 cut(s) 189, 294, 320, 322, 337, 436, 452, 588, 590
AcuI CTGAAG 2 cut(s) 1045, 1119
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 39, 723, 1298
AfiI CCNNNNNNNGG 4 cut(s) 614, 653, 923, 1173
AgsI TTSAA 6 cut(s) 123, 133, 345, 776, 965, 988
AluBI AGCT 5 cut(s) 157, 354, 674, 1008, 1139
AluI AGCT 5 cut(s) 157, 354, 674, 1008, 1139
Alw21I GWGCWC 4 cut(s) 768, 957, 1081, 1188
Alw26I GTCTC 5 cut(s) 378, 609, 791, 859, 932
Alw44I GTGCAC 1 cut(s) 1077
AoxI GGCC 2 cut(s) 71, 683
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 2 cut(s) 230, 552
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 683, 706
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 5 cut(s) 283, 474, 629, 636, 906
AvaII GGWCC 1 cut(s) 706
BaeGI GKGCMC 1 cut(s) 1081
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 4 cut(s) 768, 957, 1081, 1188
BbvI GCAGC 2 cut(s) 242, 564
BccI CCATC 4 cut(s) 269, 608, 622, 1097
BceAI ACGGC 4 cut(s) 350, 448, 693, 1271
BcgI CGANNNNNNTGC 2 cut(s) 835, 869
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 5 cut(s) 378, 609, 791, 859, 932
BfaI CTAG 4 cut(s) 12, 201, 896, 1181
BisI GCNGC 3 cut(s) 231, 338, 553
BlsI GCNGC 3 cut(s) 232, 339, 554
BmcAI AGTACT 1 cut(s) 1298
Bme1390I CCNGG 1 cut(s) 755
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 2 cut(s) 683, 706
BmiI GGNNCC 2 cut(s) 326, 708
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 2 cut(s) 242, 683
BpiI GAAGAC 1 cut(s) 792
BpuEI CTTGAG 4 cut(s) 68, 369, 854, 1313
BpuMI CCSGG 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 320, 464, 588, 666, 711
BsaWI WCCGGW 1 cut(s) 916
Bsc4I CCNNNNNNNGG 4 cut(s) 614, 653, 923, 1173
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 3 cut(s) 490, 562, 981
BseDI CCNNGG 5 cut(s) 320, 464, 588, 666, 711
BseGI GGATG 4 cut(s) 233, 282, 1255, 1312
BseLI CCNNNNNNNGG 4 cut(s) 614, 653, 923, 1173
BseMI GCAATG 3 cut(s) 490, 562, 981
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 1274
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 2 cut(s) 242, 564
Bsh1236I CGCG 3 cut(s) 322, 438, 590
BshFI GGCC 2 cut(s) 73, 685
BsiHKAI GWGCWC 4 cut(s) 768, 957, 1081, 1188
BsiSI CCGG 2 cut(s) 755, 917
BslFI GGGAC 1 cut(s) 1191
BslI CCNNNNNNNGG 4 cut(s) 614, 653, 923, 1173
BsmAI GTCTC 5 cut(s) 378, 609, 791, 859, 932
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 1 cut(s) 1191
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 73, 685
Bso31I GGTCTC 1 cut(s) 932
Bsp1286I GDGCHC 4 cut(s) 768, 957, 1081, 1188
Bsp1407I TGTACA 1 cut(s) 37
Bsp143I GATC 4 cut(s) 221, 1090, 1119, 1321
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 9 cut(s) 189, 294, 320, 322, 337, 436, 452, 588, 590
BspANI GGCC 2 cut(s) 73, 685
BspCNI CTCAG 1 cut(s) 260
BspFNI CGCG 3 cut(s) 322, 438, 590
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 326, 708
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 3 cut(s) 490, 562, 981
BsrGI TGTACA 1 cut(s) 37
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 5 cut(s) 320, 464, 588, 666, 711
BssMI GATC 4 cut(s) 221, 1090, 1119, 1321
BssT1I CCWWGG 2 cut(s) 666, 711
Bst4CI ACNGT 5 cut(s) 423, 511, 578, 603, 1031
Bst6I CTCTTC 2 cut(s) 789, 960
BstAPI GCANNNNNTGC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 71, 172, 687
BstDEI CTNAG 2 cut(s) 247, 725
BstDSI CCRYGG 4 cut(s) 320, 464, 588, 666
BstEII GGTNACC 1 cut(s) 447
BstF5I GGATG 4 cut(s) 233, 282, 1255, 1312
BstFNI CGCG 3 cut(s) 322, 438, 590
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 224, 1093, 1122, 1324
BstMAI GTCTC 5 cut(s) 378, 609, 791, 859, 932
BstMBI GATC 4 cut(s) 221, 1090, 1119, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 79, 171, 460, 686
BstNSI RCATGY 1 cut(s) 1216
BstPI GGTNACC 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 3 cut(s) 322, 438, 590
BstV1I GCAGC 2 cut(s) 242, 564
BstV2I GAAGAC 1 cut(s) 792
BsuRI GGCC 2 cut(s) 73, 685
BtgI CCRYGG 4 cut(s) 320, 464, 588, 666
BtsCI GGATG 4 cut(s) 233, 282, 1255, 1312
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 3 cut(s) 403, 583, 703
Cac8I GCNNGC 3 cut(s) 71, 172, 687
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 683, 706
Cfr42I CCGCGG 2 cut(s) 323, 591
Csp6I GTAC 3 cut(s) 38, 722, 1297
CviQI GTAC 3 cut(s) 38, 722, 1297
DdeI CTNAG 2 cut(s) 247, 725
DpnI GATC 4 cut(s) 223, 1092, 1121, 1323
DpnII GATC 4 cut(s) 221, 1090, 1119, 1321
DraIII CACNNNGTG 1 cut(s) 650
Eam1104I CTCTTC 2 cut(s) 789, 960
EarI CTCTTC 2 cut(s) 789, 960
Eco130I CCWWGG 2 cut(s) 666, 711
Eco31I GGTCTC 1 cut(s) 932
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 2 cut(s) 1045, 1119
Eco91I GGTNACC 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 447
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 666, 711
EcoT22I ATGCAT 1 cut(s) 1218
ErhI CCWWGG 2 cut(s) 666, 711
Esp3I CGTCTC 1 cut(s) 791
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 1 cut(s) 1191
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 3 cut(s) 231, 338, 553
FokI GGATG 4 cut(s) 220, 269, 1262, 1319
Fsp4HI GCNGC 3 cut(s) 231, 338, 553
FspBI CTAG 4 cut(s) 12, 201, 896, 1181
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 231, 338, 553
HaeIII GGCC 2 cut(s) 73, 685
HapII CCGG 2 cut(s) 755, 917
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1137
HinfI GANTC 2 cut(s) 867, 988
HpaII CCGG 2 cut(s) 755, 917
HphI GGTGA 5 cut(s) 283, 474, 629, 636, 906
Hpy166II GTNNAC 2 cut(s) 426, 1079
Hpy188I TCNGA 2 cut(s) 45, 1064
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 426, 1079
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 917, 1190
HpyCH4III ACNGT 5 cut(s) 423, 511, 578, 603, 1031
HpyCH4IV ACGT 1 cut(s) 800
HpyCH4V TGCA 7 cut(s) 165, 495, 696, 862, 1079, 1163, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 171, 460, 686
HpyF3I CTNAG 2 cut(s) 247, 725
HpySE526I ACGT 1 cut(s) 800
HspAI GCGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 1090
KspI CCGCGG 2 cut(s) 323, 591
Kzo9I GATC 4 cut(s) 221, 1090, 1119, 1321
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 9 cut(s) 55, 165, 269, 666, 699, 768, 930, 933, 1018
Lsp1109I GCAGC 2 cut(s) 242, 564
LweI GCATC 2 cut(s) 242, 683
MaeI CTAG 4 cut(s) 12, 201, 896, 1181
MaeII ACGT 1 cut(s) 800
MaeIII GTNAC 6 cut(s) 207, 447, 511, 545, 572, 912
MalI GATC 4 cut(s) 223, 1092, 1121, 1323
MboI GATC 4 cut(s) 221, 1090, 1119, 1321
MhlI GDGCHC 4 cut(s) 768, 957, 1081, 1188
MluCI AATT 7 cut(s) 109, 287, 701, 769, 776, 875, 960
MlyI GAGTC 1 cut(s) 861
MmeI TCCRAC 2 cut(s) 209, 1032
Mph1103I ATGCAT 1 cut(s) 1218
MseI TTAA 1 cut(s) 1236
MspA1I CMGCKG 2 cut(s) 322, 590
MspI CCGG 2 cut(s) 755, 917
MspR9I CCNGG 1 cut(s) 755
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 3 cut(s) 322, 438, 590
MwoI GCNNNNNNNGC 4 cut(s) 79, 171, 460, 686
NciI CCSGG 1 cut(s) 755
NcoI CCATGG 1 cut(s) 666
NdeII GATC 4 cut(s) 221, 1090, 1119, 1321
NlaIV GGNNCC 2 cut(s) 326, 708
NmuCI GTSAC 2 cut(s) 572, 912
NsiI ATGCAT 1 cut(s) 1218
NspI RCATGY 1 cut(s) 1216
PagI TCATGA 1 cut(s) 264
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 988
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 3 cut(s) 232, 339, 554
PleI GAGTC 1 cut(s) 861
PpsI GAGTC 1 cut(s) 861
PsiI TTATAA 1 cut(s) 1330
PspEI GGTNACC 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 326, 708
PspPI GGNCC 2 cut(s) 683, 706
RsaI GTAC 3 cut(s) 39, 723, 1298
RsaNI GTAC 3 cut(s) 38, 722, 1297
SacII CCGCGG 2 cut(s) 323, 591
SaqAI TTAA 1 cut(s) 1236
SatI GCNGC 3 cut(s) 231, 338, 553
Sau3AI GATC 4 cut(s) 221, 1090, 1119, 1321
Sau96I GGNCC 2 cut(s) 683, 706
ScaI AGTACT 1 cut(s) 1298
SchI GAGTC 1 cut(s) 861
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 4 cut(s) 768, 957, 1081, 1188
SfaNI GCATC 2 cut(s) 242, 683
Sfr303I CCGCGG 2 cut(s) 323, 591
SgrBI CCGCGG 2 cut(s) 323, 591
SinI GGWCC 1 cut(s) 706
SmlI CTYRAG 4 cut(s) 83, 384, 869, 1292
SmoI CTYRAG 4 cut(s) 83, 384, 869, 1292
Sse9I AATT 7 cut(s) 109, 287, 701, 769, 776, 875, 960
SsiI CCGC 9 cut(s) 189, 294, 320, 322, 337, 436, 452, 588, 590
SspI AATATT 1 cut(s) 641
SspMI CTAG 4 cut(s) 12, 201, 896, 1181
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 2 cut(s) 666, 711
TaaI ACNGT 5 cut(s) 423, 511, 578, 603, 1031
TaiI ACGT 1 cut(s) 803
TaqI TCGA 2 cut(s) 806, 816
TasI AATT 7 cut(s) 109, 287, 701, 769, 776, 875, 960
TatI WGTACW 2 cut(s) 37, 1296
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 988
Tru1I TTAA 1 cut(s) 1236
Tru9I TTAA 1 cut(s) 1236
TscAI CASTG 3 cut(s) 403, 583, 703
TseFI GTSAC 2 cut(s) 572, 912
TseI GCWGC 2 cut(s) 230, 552
Tsp45I GTSAC 2 cut(s) 572, 912
TspDTI ATGAA 8 cut(s) 9, 15, 102, 114, 281, 750, 951, 1323
TspRI CASTG 3 cut(s) 403, 583, 703
Van91I CCANNNNNTGG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 1077
VpaK11BI GGWCC 1 cut(s) 706
XceI RCATGY 1 cut(s) 1216
XspI CTAG 4 cut(s) 12, 201, 896, 1181
ZrmI AGTACT 1 cut(s) 1298
Zsp2I ATGCAT 1 cut(s) 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.