MD07G1125600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012879
Physical Location & Seq
Forward (+)
17639089 .. 17642561
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1125600.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGAATGTGCATGATCAACATCAAAGAAAGCCTTTTCCAGTAGAGCGAAGGCCAAGAATGCTCCTCAAAGATTTCCTCTGTGAAAATTCTAACTCATGTTCTTCAAGTGGTTTCAATTCATTTCCAAGACAATCACCAACCAACCCAAGCAATACCCCAAAAATCCTAAATTCATGTTCAGAAAATACCAATATCATTTCCAGAAAACTACTCAGAAGCAGATCAAAAGCAGCCTCCACCACAATCTCAGCATTCCACTCCCTCATGAATGCAGTCAAAAACATCCCATTTACCACGGTTAAACCTCCCTCGTTTTTACCTAGAAGCCTTTCAAGGAGGCTGCAGCAGTCAAAAGACTCAAAACAGAACTCACCAAGCTCATCAAGGAAGCAGGGTAGTCAATGTCAAGTCCAAATTACCGTGAGAGTCAAGGACATCATACGGTGGACATCGTTCCGCGATGAGAAGTTACCGCCACCTCCGCCGTTGGACTTTGTTTCTTCACCTCTGCATTGTACCACAAGCACCACCATAACAGGCTCCACCACTACATGTACTACTTGTAGTAGTAATAGCAGCAGCAACGGTTCAAGCTGGTCTGACAGTGATTTCACCTCGGAGTTTTTACCGCGTTGGGGTGGTAACTCTGACCCTGACTGTGAGGAGGATGGTAAAAAATATTCACCATGTGTCGGCAGGGATTCCATGGAAATGGACGCTACATCAGGGACAGGAAGTTACGCCGCATTGGGACCCAAGGTTGAGCTGCAACCGTGTGATGAAGAAGATGAGCAGCAGAGCCCAATTTCAGTGCTTGGTTTTCAATTTGGGGAAGATGAAGACTCGTCATTTTCAAGTACTTTTGGTCAAAGCATGGCCAATATGGAGAGGGCAAAAGAAATGCTTATGAAGAAGATCGAGCTCTTTGAGAGTCTTGCAACAATAGATCCTGTCAACTTAGACACATCAATGTCGTTCAACGAAAGAGCCAACTTTGAAGAAGATGATGAAACAGCAGAAAGGGCAATGGAGCTGTTAAACCATTGCAAAGCAAGCTGCCCAGACCTAAAGAGCTGGGAGCTGGAAATAGTGGAAGATCAACTATTGTTTGATTTTTTTAGAGAAGAAATGAGTGCACAACGAAATAAAAAAGATGATGAGTTTAAAAGGGAAATGGTTAGCAAAGCAAAAGCTTGGATGAGAGGGGAGTGGGGATCACTAGAGCACAACAAGGAAGCTTGTGTGAGAGATATGCACAAAGGAAGGAGGTGGAACAAGTTTGAGTTTGAGCAACAGGAGCTGGCTTTGGAAATAGAGACTGCCTTGTCAGAGTACTTGGTGGATGAGCTTTTGCTTGATCTCTTATCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

51.75

Weight (kDa)

5.21

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1324
AccII CGCG 2 cut(s) 459, 631
AciI CCGC 5 cut(s) 457, 473, 482, 629, 744
AclWI GGATC 2 cut(s) 941, 1222
AcoI YGGCCR 1 cut(s) 876
AcsI RAATTY 2 cut(s) 85, 169
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 4 cut(s) 517, 556, 859, 1334
AfiI CCNNNNNNNGG 2 cut(s) 635, 692
AflIII ACRYGT 1 cut(s) 551
AgsI TTSAA 8 cut(s) 105, 115, 333, 591, 824, 855, 979, 998
Alw21I GWGCWC 3 cut(s) 924, 1138, 1227
Alw26I GTCTC 1 cut(s) 1310
Alw44I GTGCAC 1 cut(s) 1134
AlwI GGATC 2 cut(s) 941, 1222
AlwNI CAGNNNCTG 1 cut(s) 1300
AoxI GGCC 2 cut(s) 50, 876
ApaLI GTGCAC 1 cut(s) 1134
ApeKI GCWGC 8 cut(s) 230, 340, 343, 576, 579, 766, 793, 1056
ApoI RAATTY 2 cut(s) 85, 169
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 752
AsuHPI GGTGA 5 cut(s) 126, 363, 495, 604, 675
AvaII GGWCC 1 cut(s) 752
BaeGI GKGCMC 1 cut(s) 1138
BalI TGGCCA 1 cut(s) 878
BanII GRGCYC 2 cut(s) 803, 924
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 3 cut(s) 924, 1138, 1227
BbvI GCAGC 8 cut(s) 242, 327, 355, 588, 591, 753, 805, 1043
BccI CCATC 1 cut(s) 662
BceAI ACGGC 1 cut(s) 469
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 1310
BfaI CTAG 2 cut(s) 321, 1220
BfmI CTRYAG 1 cut(s) 341
BisI GCNGC 9 cut(s) 231, 341, 344, 577, 580, 744, 767, 794, 1057
BlsI GCNGC 9 cut(s) 232, 342, 345, 578, 581, 745, 768, 795, 1058
BmcAI AGTACT 2 cut(s) 859, 1334
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 3 cut(s) 541, 753, 754
BpiI GAAGAC 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 4 cut(s) 294, 615, 705, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 692
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 1032, 1042
Bse8I GATNNNNATC 1 cut(s) 18
BseDI CCNNGG 4 cut(s) 294, 615, 705, 756
BseGI GGATG 4 cut(s) 282, 673, 1203, 1348
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 635, 692
BseMI GCAATG 2 cut(s) 1032, 1042
BseMII CTCAG 2 cut(s) 226, 261
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 53, 677
BseSI GKGCMC 1 cut(s) 1138
BseXI GCAGC 8 cut(s) 242, 327, 355, 588, 591, 753, 805, 1043
BseYI CCCAGC 1 cut(s) 1074
Bsh1236I CGCG 2 cut(s) 459, 631
BshFI GGCC 2 cut(s) 52, 878
BsiHKAI GWGCWC 3 cut(s) 924, 1138, 1227
BslFI GGGAC 2 cut(s) 742, 765
BslI CCNNNNNNNGG 2 cut(s) 635, 692
BsmAI GTCTC 1 cut(s) 1310
BsmFI GGGAC 2 cut(s) 742, 765
BsmI GAATGC 3 cut(s) 63, 251, 274
BsnI GGCC 2 cut(s) 52, 878
Bsp1286I GDGCHC 4 cut(s) 803, 924, 1138, 1227
Bsp143I GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 5 cut(s) 457, 473, 482, 629, 744
BspANI GGCC 2 cut(s) 52, 878
BspCNI CTCAG 2 cut(s) 225, 260
BspFNI CGCG 2 cut(s) 459, 631
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 541, 753, 754
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 2 cut(s) 941, 1222
BsrDI GCAATG 2 cut(s) 1032, 1042
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 294, 615, 705, 756
BssMI GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
BssT1I CCWWGG 2 cut(s) 705, 756
Bst4CI ACNGT 7 cut(s) 298, 421, 444, 587, 605, 659, 774
BstC8I GCNNGC 2 cut(s) 1054, 1302
BstDEI CTNAG 3 cut(s) 212, 247, 958
BstDSI CCRYGG 2 cut(s) 294, 705
BstF5I GGATG 4 cut(s) 282, 673, 1203, 1348
BstFNI CGCG 2 cut(s) 459, 631
BstKTI GATC 7 cut(s) 16, 224, 918, 949, 1099, 1217, 1360
BstMAI GTCTC 1 cut(s) 1310
BstMBI GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
BstMWI GCNNNNNNNGC 5 cut(s) 58, 481, 1022, 1053, 1297
BstNSI RCATGY 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 1138
BstUI CGCG 2 cut(s) 459, 631
BstV1I GCAGC 8 cut(s) 242, 327, 355, 588, 591, 753, 805, 1043
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 946
BsuRI GGCC 2 cut(s) 52, 878
BtgI CCRYGG 2 cut(s) 294, 705
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 4 cut(s) 282, 673, 1203, 1348
BtsIMutI CAGTG 2 cut(s) 610, 816
Cac8I GCNNGC 2 cut(s) 1054, 1302
CaiI CAGNNNCTG 1 cut(s) 1300
CciI TCATGA 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 1 cut(s) 725
Csp6I GTAC 4 cut(s) 516, 555, 858, 1333
CviAII CATG 8 cut(s) 11, 96, 174, 265, 552, 687, 706, 874
CviQI GTAC 4 cut(s) 516, 555, 858, 1333
DdeI CTNAG 3 cut(s) 212, 247, 958
DpnI GATC 7 cut(s) 15, 223, 917, 948, 1098, 1216, 1359
DpnII GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
DraI TTTAAA 1 cut(s) 1165
DraIII CACNNNGTG 1 cut(s) 689
DrdI GACNNNNNNGTC 1 cut(s) 1324
DseDI GACNNNNNNGTC 1 cut(s) 1324
EaeI YGGCCR 1 cut(s) 876
EciI GGCGGA 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 922
Eco130I CCWWGG 2 cut(s) 705, 756
Eco24I GRGCYC 2 cut(s) 803, 924
Eco47I GGWCC 1 cut(s) 752
Eco53kI GAGCTC 1 cut(s) 922
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 752
EcoT14I CCWWGG 2 cut(s) 705, 756
EcoT38I GRGCYC 2 cut(s) 803, 924
ErhI CCWWGG 2 cut(s) 705, 756
FaeI CATG 8 cut(s) 14, 99, 177, 268, 555, 690, 709, 877
FalI AAGNNNNNCTT 4 cut(s) 16, 48, 888, 920
FaqI GGGAC 2 cut(s) 742, 765
FatI CATG 8 cut(s) 10, 95, 173, 264, 551, 686, 705, 873
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 9 cut(s) 231, 341, 344, 577, 580, 744, 767, 794, 1057
FokI GGATG 4 cut(s) 269, 680, 1210, 1355
FriOI GRGCYC 2 cut(s) 803, 924
Fsp4HI GCNGC 9 cut(s) 231, 341, 344, 577, 580, 744, 767, 794, 1057
FspBI CTAG 2 cut(s) 321, 1220
GluI GCNGC 9 cut(s) 231, 341, 344, 577, 580, 744, 767, 794, 1057
GsaI CCCAGC 1 cut(s) 1078
HaeIII GGCC 2 cut(s) 52, 878
HgaI GACGC 1 cut(s) 725
Hin1II CATG 8 cut(s) 14, 99, 177, 268, 555, 690, 709, 877
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 2 cut(s) 1191, 1236
HinfI GANTC 5 cut(s) 356, 426, 701, 842, 931
HphI GGTGA 5 cut(s) 126, 363, 495, 604, 675
Hpy166II GTNNAC 3 cut(s) 447, 955, 1136
Hpy188I TCNGA 6 cut(s) 181, 215, 601, 619, 649, 1330
Hpy188III TCNNGA 3 cut(s) 201, 265, 1368
Hpy8I GTNNAC 3 cut(s) 447, 955, 1136
HpyAV CCTTC 2 cut(s) 42, 1257
HpyCH4III ACNGT 7 cut(s) 298, 421, 444, 587, 605, 659, 774
HpyCH4V TGCA 9 cut(s) 10, 272, 343, 511, 769, 938, 1047, 1136, 1255
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 481, 1022, 1053, 1297
HpyF3I CTNAG 3 cut(s) 212, 247, 958
Hsp92II CATG 8 cut(s) 14, 99, 177, 268, 555, 690, 709, 877
KflI GGGWCCC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
LmnI GCTCC 5 cut(s) 66, 545, 1030, 1078, 1297
Lsp1109I GCAGC 8 cut(s) 242, 327, 355, 588, 591, 753, 805, 1043
MaeI CTAG 2 cut(s) 321, 1220
MaeIII GTNAC 3 cut(s) 468, 641, 737
MalI GATC 7 cut(s) 15, 223, 917, 948, 1098, 1216, 1359
MboI GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 4 cut(s) 803, 924, 1138, 1227
MlsI TGGCCA 1 cut(s) 878
MluCI AATT 6 cut(s) 85, 115, 169, 414, 804, 824
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 4 cut(s) 350, 435, 836, 940
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 878
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 878
MseI TTAA 3 cut(s) 300, 1037, 1164
MslI CAYNNNNRTG 2 cut(s) 710, 968
Msp20I TGGCCA 1 cut(s) 878
Mva1269I GAATGC 3 cut(s) 63, 251, 274
MvnI CGCG 2 cut(s) 459, 631
MwoI GCNNNNNNNGC 5 cut(s) 58, 481, 1022, 1053, 1297
NcoI CCATGG 1 cut(s) 705
NdeII GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
NlaIII CATG 8 cut(s) 14, 99, 177, 268, 555, 690, 709, 877
NlaIV GGNNCC 3 cut(s) 541, 753, 754
NspI RCATGY 1 cut(s) 555
PagI TCATGA 1 cut(s) 264
PciI ACATGT 1 cut(s) 551
PctI GAATGC 3 cut(s) 63, 251, 274
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 9 cut(s) 232, 342, 345, 578, 581, 745, 768, 795, 1058
PleI GAGTC 4 cut(s) 350, 434, 836, 939
PpsI GAGTC 4 cut(s) 350, 434, 836, 939
PpuMI RGGWCCY 1 cut(s) 752
PscI ACATGT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 752
PspFI CCCAGC 1 cut(s) 1074
PspN4I GGNNCC 3 cut(s) 541, 753, 754
PspPI GGNCC 1 cut(s) 752
PspPPI RGGWCCY 1 cut(s) 752
PstI CTGCAG 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 1300
PsuI RGATCY 1 cut(s) 946
RsaI GTAC 4 cut(s) 517, 556, 859, 1334
RsaNI GTAC 4 cut(s) 516, 555, 858, 1333
RseI CAYNNNNRTG 2 cut(s) 710, 968
SacI GAGCTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 300, 1037, 1164
SatI GCNGC 9 cut(s) 231, 341, 344, 577, 580, 744, 767, 794, 1057
Sau3AI GATC 7 cut(s) 13, 221, 915, 946, 1096, 1214, 1357
Sau96I GGNCC 1 cut(s) 752
ScaI AGTACT 2 cut(s) 859, 1334
SchI GAGTC 4 cut(s) 350, 435, 836, 940
SduI GDGCHC 4 cut(s) 803, 924, 1138, 1227
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 752
SmiMI CAYNNNNRTG 2 cut(s) 710, 968
Sse9I AATT 6 cut(s) 85, 115, 169, 414, 804, 824
SsiI CCGC 5 cut(s) 457, 473, 482, 629, 744
SspI AATATT 1 cut(s) 680
SspMI CTAG 2 cut(s) 321, 1220
SstI GAGCTC 1 cut(s) 924
StyI CCWWGG 2 cut(s) 705, 756
TaaI ACNGT 7 cut(s) 298, 421, 444, 587, 605, 659, 774
TaqI TCGA 1 cut(s) 918
TasI AATT 6 cut(s) 85, 115, 169, 414, 804, 824
TatI WGTACW 3 cut(s) 554, 857, 1332
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 3 cut(s) 300, 1037, 1164
Tru9I TTAA 3 cut(s) 300, 1037, 1164
TscAI CASTG 2 cut(s) 610, 816
TseI GCWGC 8 cut(s) 230, 340, 343, 576, 579, 766, 793, 1056
TspDTI ATGAA 8 cut(s) 17, 108, 162, 281, 795, 852, 923, 1023
TspRI CASTG 2 cut(s) 610, 816
VneI GTGCAC 1 cut(s) 1134
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 2 cut(s) 85, 169
XceI RCATGY 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 2 cut(s) 321, 1220
ZrmI AGTACT 2 cut(s) 859, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.