pycom01g07320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012879
Physical Location & Seq
Reverse (-)
8181813 .. 8184422
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07320.3

Sequence Viewer

Length: 1356 bp
ATGTGCATGACCAACATCAAAGAAAGCCTTTTTCCAATAGAGCGCAGGCCAAGAATGCTTCTCAAAGATTTCCTCGGTGAAAATTCTAACTCATGTTCTTCAAGTGGTTTCATATCATTTCCAAGACAGTTACCATCCAATCCAAGCAATGCCCCCGAAACCCAAAATTCATGTTCAGAAAATACCACTACCATTTCCAAAAAACTACTCAGAAGCAGATCAAGGGCTGCCTGGACCACAATCTCAGCATTCCACTCTCTCATGAATGCAGTTAAAAACATGCCATTTACCGCGGTAAAACCCCCCTCGTTTTTACCTAGAAGCCTCTCAAGGAGGCCGCTGCAGTCAAAACAGAACTCACCAAGATCATCAAGGAAGCAAGGTAGTCAAAGCCAAGTCCAAATTACCGTGAGAGTCAAAGACATCATACGGTGGACATCCTTCCGCGATGAGAAGTTGCCTCCACCCCCACCTTTGGATTATGTTTCTTCACCTCTGCACTGTACCTCAAGCACCACCATAACAGGCTCCACCACCACATGTACTACGTGCAGTAGTAATAGCAGCAGCAATGGGTCGAGCTGGTGTGACAGTGATTTTACCTCGAAATTTTTACAGCCTTGGGGTGGCAACTCTGACCCTGACTATCAGGAGGATAGTAAAAAATATTCACTATGTGTCGGCAGGGATTCCATGGAGGCTACATCAGGGACAGGAAGTTACGCCGCATTGGGACCCAAGGTTGAGCTGCCACTGTGTGATGAAGAAGATGAGCAGCACAGCCCAGTTTCAGTGATTGGTTTTCAATTTGGGGAAGATGAAGACTCGTCATTTTCAAGTAATTTTGATCAAAGCCTGGCCAATATGGAGAGGACAAAAGAAATGCTTATGCAAAAGATCAAGCTCTTTGAGAGTCTTGTAACAGTGGATCCTATCAACTTAGACACATCAATGTCGTTCGAAGAAAGAACCAACTTTGAAGAAGATGACGAAACAGCAGAAAGGGCAATGGAGCTGTTAAATCATTGCAAAGCAAGCTGCTCAGACCTAAAGAGCTGGGAGCTGGAACTAGTAGAAGATCAACTATTGTTTGATTTCTTTAGAGAAGAAATGAGTGCTCAAAGAAATAAAAAAGAAGATGGGTTTAATAGGCAAATGATTAGCAAAGCAAGAGCTTGGATGAGTGGGGACTGGGGATCACTAGAGCACAACAAGGAAGCTTGTGTGAGAGATATGCACGAAGGAAGGAGGTGGAACAAGTTTGAGTTTGAGCAAGAGGAGCTGGGTTTGGAAATAGAGATTGCCTTGTCAGAGTATTTGGTGGATGAGCTTTTGCTTGATCTCTTATCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

51.1

Weight (kDa)

5.01

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 293, 447
AciI CCGC 5 cut(s) 291, 293, 338, 445, 726
AclWI GGATC 3 cut(s) 923, 936, 1204
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 3 cut(s) 82, 166, 608
AdeI CACNNNGTG 2 cut(s) 677, 758
AfaI GTAC 2 cut(s) 505, 544
AfiI CCNNNNNNNGG 2 cut(s) 475, 626
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 4 cut(s) 102, 806, 837, 980
AhlI ACTAGT 1 cut(s) 1069
AjnI CCWGG 2 cut(s) 230, 855
Alw21I GWGCWC 2 cut(s) 1120, 1209
AlwI GGATC 3 cut(s) 923, 936, 1204
AoxI GGCC 3 cut(s) 47, 335, 858
ApeKI GCWGC 7 cut(s) 227, 340, 564, 567, 748, 775, 1038
ApoI RAATTY 3 cut(s) 82, 166, 608
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 234, 734
AsuHPI GGTGA 3 cut(s) 89, 351, 483
AsuII TTCGAA 1 cut(s) 960
AvaII GGWCC 2 cut(s) 234, 734
BalI TGGCCA 1 cut(s) 860
BamHI GGATCC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 2 cut(s) 1120, 1209
BbvI GCAGC 7 cut(s) 214, 327, 576, 579, 735, 787, 1025
BccI CCATC 2 cut(s) 142, 1133
BciT130I CCWGG 2 cut(s) 232, 857
BclI TGATCA 1 cut(s) 847
BcuI ACTAGT 1 cut(s) 1069
BfaI CTAG 3 cut(s) 318, 1070, 1202
BfmI CTRYAG 1 cut(s) 341
BisI GCNGC 9 cut(s) 228, 338, 341, 565, 568, 726, 749, 776, 1039
BlsI GCNGC 9 cut(s) 229, 339, 342, 566, 569, 727, 750, 777, 1040
Bme1390I CCNGG 2 cut(s) 232, 857
Bme18I GGWCC 2 cut(s) 234, 734
BmgT120I GGNCC 2 cut(s) 234, 734
BmiI GGNNCC 4 cut(s) 529, 735, 736, 930
BmrFI CCNGG 2 cut(s) 232, 857
BmrI ACTGGG 2 cut(s) 779, 1201
BmuI ACTGGG 2 cut(s) 779, 1201
BpiI GAAGAC 1 cut(s) 828
Bpu14I TTCGAA 1 cut(s) 960
BpuEI CTTGAG 2 cut(s) 313, 493
BsaAI YACGTR 1 cut(s) 549
BsaJI CCNNGG 5 cut(s) 73, 291, 620, 693, 738
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 626
Bse1I ACTGG 2 cut(s) 785, 1196
Bse3DI GCAATG 4 cut(s) 154, 577, 1014, 1024
BseBI CCWGG 2 cut(s) 232, 857
BseDI CCNNGG 5 cut(s) 73, 291, 620, 693, 738
BseGI GGATG 4 cut(s) 134, 437, 1185, 1330
BseLI CCNNNNNNNGG 2 cut(s) 475, 626
BseMI GCAATG 4 cut(s) 154, 577, 1014, 1024
BseMII CTCAG 3 cut(s) 223, 258, 1056
BseNI ACTGG 2 cut(s) 785, 1196
BseRI GAGGAG 1 cut(s) 1292
BseXI GCAGC 7 cut(s) 214, 327, 576, 579, 735, 787, 1025
BseYI CCCAGC 2 cut(s) 1056, 1282
BsgI GTGCAG 2 cut(s) 482, 571
Bsh1236I CGCG 2 cut(s) 293, 447
BshFI GGCC 3 cut(s) 49, 337, 860
BsiHKAI GWGCWC 2 cut(s) 1120, 1209
BslFI GGGAC 3 cut(s) 724, 747, 1202
BslI CCNNNNNNNGG 2 cut(s) 475, 626
BsmFI GGGAC 3 cut(s) 724, 747, 1202
BsmI GAATGC 3 cut(s) 60, 248, 271
BsnI GGCC 3 cut(s) 49, 337, 860
Bsp119I TTCGAA 1 cut(s) 960
Bsp1286I GDGCHC 2 cut(s) 1120, 1209
Bsp143I GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
Bsp19I CCATGG 1 cut(s) 693
BspACI CCGC 5 cut(s) 291, 293, 338, 445, 726
BspANI GGCC 3 cut(s) 49, 337, 860
BspCNI CTCAG 3 cut(s) 222, 257, 1055
BspFNI CGCG 2 cut(s) 293, 447
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 529, 735, 736, 930
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 3 cut(s) 923, 936, 1204
BspT104I TTCGAA 1 cut(s) 960
BsrDI GCAATG 4 cut(s) 154, 577, 1014, 1024
BsrI ACTGG 2 cut(s) 785, 1196
BssECI CCNNGG 5 cut(s) 73, 291, 620, 693, 738
BssMI GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
BssT1I CCWWGG 3 cut(s) 620, 693, 738
Bst2UI CCWGG 2 cut(s) 232, 857
Bst4CI ACNGT 7 cut(s) 129, 409, 432, 503, 593, 756, 925
BstBAI YACGTR 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 960
BstC8I GCNNGC 2 cut(s) 47, 1036
BstDEI CTNAG 4 cut(s) 209, 244, 940, 1042
BstDSI CCRYGG 2 cut(s) 291, 693
BstF5I GGATG 4 cut(s) 134, 437, 1185, 1330
BstFNI CGCG 2 cut(s) 293, 447
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 8 cut(s) 221, 368, 850, 900, 931, 1081, 1199, 1342
BstMBI GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
BstMWI GCNNNNNNNGC 4 cut(s) 55, 1004, 1035, 1279
BstNI CCWGG 2 cut(s) 232, 857
BstNSI RCATGY 2 cut(s) 283, 543
BstSCI CCNGG 2 cut(s) 230, 855
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 2 cut(s) 293, 447
BstV1I GCAGC 7 cut(s) 214, 327, 576, 579, 735, 787, 1025
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 928
BstYI RGATCY 1 cut(s) 928
BsuRI GGCC 3 cut(s) 49, 337, 860
BtgI CCRYGG 2 cut(s) 291, 693
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 4 cut(s) 134, 437, 1185, 1330
BtsIMutI CAGTG 5 cut(s) 499, 598, 752, 798, 930
Cac8I GCNNGC 2 cut(s) 47, 1036
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 234, 734
Cfr42I CCGCGG 1 cut(s) 294
Csp6I GTAC 2 cut(s) 504, 543
CviAII CATG 7 cut(s) 7, 93, 171, 262, 280, 540, 694
CviQI GTAC 2 cut(s) 504, 543
DdeI CTNAG 4 cut(s) 209, 244, 940, 1042
DpnI GATC 8 cut(s) 220, 367, 849, 899, 930, 1080, 1198, 1341
DpnII GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
DraIII CACNNNGTG 2 cut(s) 677, 758
EaeI YGGCCR 1 cut(s) 858
Eco130I CCWWGG 3 cut(s) 620, 693, 738
Eco47I GGWCC 2 cut(s) 234, 734
EcoO109I RGGNCCY 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 230, 855
EcoT14I CCWWGG 3 cut(s) 620, 693, 738
ErhI CCWWGG 3 cut(s) 620, 693, 738
FaeI CATG 7 cut(s) 10, 96, 174, 265, 283, 543, 697
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 870, 902
FaqI GGGAC 3 cut(s) 724, 747, 1202
FatI CATG 7 cut(s) 6, 92, 170, 261, 279, 539, 693
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 9 cut(s) 228, 338, 341, 565, 568, 726, 749, 776, 1039
FokI GGATG 4 cut(s) 121, 424, 1192, 1337
Fsp4HI GCNGC 9 cut(s) 228, 338, 341, 565, 568, 726, 749, 776, 1039
FspBI CTAG 3 cut(s) 318, 1070, 1202
GlaI GCGC 1 cut(s) 44
GluI GCNGC 9 cut(s) 228, 338, 341, 565, 568, 726, 749, 776, 1039
GsaI CCCAGC 2 cut(s) 1060, 1286
HaeIII GGCC 3 cut(s) 49, 337, 860
HhaI GCGC 1 cut(s) 45
Hin1II CATG 7 cut(s) 10, 96, 174, 265, 283, 543, 697
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 4 cut(s) 414, 689, 824, 913
HphI GGTGA 3 cut(s) 89, 351, 483
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 5 cut(s) 178, 212, 637, 1045, 1312
Hpy188III TCNNGA 3 cut(s) 262, 650, 1350
Hpy8I GTNNAC 1 cut(s) 435
HpyAV CCTTC 3 cut(s) 451, 1235, 1239
HpyCH4III ACNGT 7 cut(s) 129, 409, 432, 503, 593, 756, 925
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 8 cut(s) 6, 269, 343, 499, 552, 892, 1029, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 1004, 1035, 1279
HpyF3I CTNAG 4 cut(s) 209, 244, 940, 1042
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 7 cut(s) 10, 96, 174, 265, 283, 543, 697
HspAI GCGC 1 cut(s) 43
KflI GGGWCCC 1 cut(s) 734
Ksp22I TGATCA 1 cut(s) 847
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
LmnI GCTCC 4 cut(s) 533, 1012, 1060, 1279
Lsp1109I GCAGC 7 cut(s) 214, 327, 576, 579, 735, 787, 1025
MaeI CTAG 3 cut(s) 318, 1070, 1202
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 4 cut(s) 129, 587, 719, 919
MalI GATC 8 cut(s) 220, 367, 849, 899, 930, 1080, 1198, 1341
MboI GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 2 cut(s) 1120, 1209
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 6 cut(s) 82, 166, 402, 608, 806, 841
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 3 cut(s) 423, 818, 922
Mox20I TGGCCA 1 cut(s) 860
MscI TGGCCA 1 cut(s) 860
MseI TTAA 3 cut(s) 273, 1019, 1146
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 293, 340
MspR9I CCNGG 2 cut(s) 232, 857
Mva1269I GAATGC 3 cut(s) 60, 248, 271
MvaI CCWGG 2 cut(s) 232, 857
MvnI CGCG 2 cut(s) 293, 447
MwoI GCNNNNNNNGC 4 cut(s) 55, 1004, 1035, 1279
NcoI CCATGG 1 cut(s) 693
NdeII GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
NlaIII CATG 7 cut(s) 10, 96, 174, 265, 283, 543, 697
NlaIV GGNNCC 4 cut(s) 529, 735, 736, 930
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 2 cut(s) 283, 543
NspV TTCGAA 1 cut(s) 960
PagI TCATGA 1 cut(s) 261
PciI ACATGT 1 cut(s) 539
PctI GAATGC 3 cut(s) 60, 248, 271
PfeI GAWTC 1 cut(s) 689
PkrI GCNGC 9 cut(s) 229, 339, 342, 566, 569, 727, 750, 777, 1040
PleI GAGTC 3 cut(s) 422, 818, 921
PpsI GAGTC 3 cut(s) 422, 818, 921
Ppu21I YACGTR 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 734
PscI ACATGT 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 230, 855
PspFI CCCAGC 2 cut(s) 1056, 1282
PspGI CCWGG 2 cut(s) 230, 855
PspN4I GGNNCC 4 cut(s) 529, 735, 736, 930
PspPI GGNCC 2 cut(s) 234, 734
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 928
RsaI GTAC 2 cut(s) 505, 544
RsaNI GTAC 2 cut(s) 504, 543
RseI CAYNNNNRTG 1 cut(s) 950
SacII CCGCGG 1 cut(s) 294
SaqAI TTAA 3 cut(s) 273, 1019, 1146
SatI GCNGC 9 cut(s) 228, 338, 341, 565, 568, 726, 749, 776, 1039
Sau3AI GATC 8 cut(s) 218, 365, 847, 897, 928, 1078, 1196, 1339
Sau96I GGNCC 2 cut(s) 234, 734
SchI GAGTC 3 cut(s) 423, 818, 922
ScrFI CCNGG 2 cut(s) 232, 857
SduI GDGCHC 2 cut(s) 1120, 1209
SfcI CTRYAG 1 cut(s) 341
Sfr303I CCGCGG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 960
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 2 cut(s) 234, 734
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 2 cut(s) 328, 508
SmoI CTYRAG 2 cut(s) 328, 508
SpeI ACTAGT 1 cut(s) 1069
Sse9I AATT 6 cut(s) 82, 166, 402, 608, 806, 841
SsiI CCGC 5 cut(s) 291, 293, 338, 445, 726
SspI AATATT 1 cut(s) 668
SspMI CTAG 3 cut(s) 318, 1070, 1202
StyD4I CCNGG 2 cut(s) 230, 855
StyI CCWWGG 3 cut(s) 620, 693, 738
TaaI ACNGT 7 cut(s) 129, 409, 432, 503, 593, 756, 925
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 578, 605, 960
TasI AATT 6 cut(s) 82, 166, 402, 608, 806, 841
TatI WGTACW 1 cut(s) 542
TauI GCSGC 2 cut(s) 340, 728
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 3 cut(s) 273, 1019, 1146
Tru9I TTAA 3 cut(s) 273, 1019, 1146
TscAI CASTG 5 cut(s) 506, 598, 759, 798, 930
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 7 cut(s) 227, 340, 564, 567, 748, 775, 1038
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 5 cut(s) 100, 159, 278, 777, 834
TspRI CASTG 5 cut(s) 506, 598, 759, 798, 930
VpaK11BI GGWCC 2 cut(s) 234, 734
XapI RAATTY 3 cut(s) 82, 166, 608
XceI RCATGY 2 cut(s) 283, 543
XspI CTAG 3 cut(s) 318, 1070, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.