Prupe.2G153900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012879
Physical Location & Seq
Reverse (-)
20801006 .. 20803832
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G153900.1

Sequence Viewer

Length: 1278 bp
ATGTTGCAGCAGCATCAAAGAAAGCCTTGTCCAATAGAGCGCAGGCCTAGAATGCTCCTCAAAGATTTCCTCAATGAGAATTCTAACTCATGTTCTTCAAGTGGGTTCAAATCATTCCCCAGAAAACGATCACCATTCAATCCCAGGAGTCCCCAGAAGAACCTCATTGAATTTGATCCAAAACCAACAAGTTCAAACTCAAAAAATAACCCCACCATTACCAGCAAATTACTCAGAAGCAGATCAAAGGCAGCCTCCACCACAATCTCAGCCTTCCAGTCCCTCATGAATGCAGTTAAAAACATCCCATTTACCACGGTAAAATCTCCCTCCTTTTTACCTCGAAGCCTCTCAAGGAGGCTGCTGCAGTCAAAATTTCAGAGCTCATCGAGAAAGCAGAGTCAAAACCAAGTCCAAATTACTGTGAGAGTCAAGGACATCATACGGTGGACATCGTTCCGCGATGAAATGTTACCTCCACCTCCACCGTTGGATTATGCTTCTTCACCTCTCCATTGTACCACAAGCACCACCATAACAGGGTCCACAACTACTACTTGTACAACTTGTAGCAGCAGCAGCAATGGGTCAAGCTGGTGTGACAGTGATTTTACCGCAGAGTTTTTACCGTCTTTGGTTGGTAGTAACTCTGACCCTCACGCTGATGAGGAGGTTGGTAAAAAATATTTACCATGTGTCGGCAAGGATTTCATGGAGGAGGAGGCATCAACAACAGGGACAGGAAGTTGCAATATTGCTTTGGGACCCCAGGTTGAGATACTGCTGGGTGATGAAGATGAACAGCACAGTCCAGTTTCAGTGCTTGATTGTCAATTTGGGGAAGATGAAGATGATTCATTTACAAGTACTTTTGATCAAAGCCTTGCCAATGTGGGTGATGAAGATGAAGAAATGGCCATGGAGCTGTTGAATTATGTCAAAGCAACTAGCTCATCACCAGACAGCTGTGAGGAAGGCCATTTGGAAGATAAACTGCTGTTGGATTTCTTTAGAGAAGAAATGAGTGTCCAAAGAAATCAAACTGATGATGGATTTCAATGGGAGATGGTGAGCAAAGCAAAAGCTTGGGTGAGTGGAGAACACAATGAACTTGAGTGGGGGCTAGAGCACAAGAAGGAAGCTTGTGTTAGAGACATGCATAAAGGAGGGAGGTGGAACAAGTTTGAGTATGAGCAAGAGGAGATGGCCTTAGAAATTGAGACTGCCATGACAGATTTCTTGATGGAGGAGCTTCTGGTTGATCTCTTATCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.82

Weight (kDa)

4.97

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 462
AciI CCGC 2 cut(s) 460, 615
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 3 cut(s) 79, 170, 374
AfaI GTAC 3 cut(s) 520, 562, 868
AfiI CCNNNNNNNGG 2 cut(s) 540, 698
AgsI TTSAA 7 cut(s) 99, 109, 139, 170, 195, 931, 1058
AjnI CCWGG 2 cut(s) 143, 768
AluBI AGCT 8 cut(s) 384, 594, 925, 951, 966, 1085, 1142, 1252
AluI AGCT 8 cut(s) 384, 594, 925, 951, 966, 1085, 1142, 1252
Alw21I GWGCWC 2 cut(s) 386, 1131
Alw26I GTCTC 2 cut(s) 1146, 1214
AlwI GGATC 1 cut(s) 170
AoxI GGCC 4 cut(s) 44, 915, 976, 1206
ApeKI GCWGC 8 cut(s) 7, 10, 251, 361, 364, 573, 576, 579
ApoI RAATTY 3 cut(s) 79, 170, 374
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 543, 764
AsuHPI GGTGA 7 cut(s) 123, 498, 800, 908, 948, 1081, 1102
AvaII GGWCC 2 cut(s) 543, 764
BalI TGGCCA 1 cut(s) 917
BanII GRGCYC 1 cut(s) 386
Bbv12I GWGCWC 2 cut(s) 386, 1131
BbvI GCAGC 8 cut(s) 19, 22, 263, 348, 351, 585, 588, 591
BccI CCATC 4 cut(s) 1043, 1060, 1198, 1237
BciT130I CCWGG 2 cut(s) 145, 770
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 2 cut(s) 1146, 1214
BfaI CTAG 3 cut(s) 48, 948, 1124
BfmI CTRYAG 1 cut(s) 365
BisI GCNGC 8 cut(s) 8, 11, 252, 362, 365, 574, 577, 580
BlsI GCNGC 8 cut(s) 9, 12, 253, 363, 366, 575, 578, 581
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 2 cut(s) 145, 770
Bme18I GGWCC 2 cut(s) 543, 764
BmgT120I GGNCC 2 cut(s) 543, 764
BmiI GGNNCC 3 cut(s) 544, 765, 766
BmrFI CCNGG 2 cut(s) 145, 770
BmsI GCATC 2 cut(s) 22, 734
BpuEI CTTGAG 2 cut(s) 337, 1133
BsaJI CCNNGG 4 cut(s) 143, 315, 768, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 540, 698
Bse1I ACTGG 2 cut(s) 277, 812
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 2 cut(s) 145, 770
BseDI CCNNGG 4 cut(s) 143, 315, 768, 918
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 540, 698
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 247, 282
BseNI ACTGG 2 cut(s) 277, 812
BseRI GAGGAG 6 cut(s) 47, 683, 731, 734, 1214, 1262
BseXI GCAGC 8 cut(s) 19, 22, 263, 348, 351, 585, 588, 591
BseYI CCCAGC 1 cut(s) 784
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 4 cut(s) 46, 917, 978, 1208
BsiHKAI GWGCWC 2 cut(s) 386, 1131
BslFI GGGAC 4 cut(s) 135, 265, 751, 777
BslI CCNNNNNNNGG 2 cut(s) 540, 698
BsmAI GTCTC 2 cut(s) 1146, 1214
BsmFI GGGAC 4 cut(s) 135, 265, 751, 777
BsmI GAATGC 2 cut(s) 57, 295
BsnI GGCC 4 cut(s) 46, 917, 978, 1208
Bsp1286I GDGCHC 2 cut(s) 386, 1131
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 5 cut(s) 128, 175, 242, 874, 1261
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 2 cut(s) 460, 615
BspANI GGCC 4 cut(s) 46, 917, 978, 1208
BspCNI CTCAG 2 cut(s) 246, 281
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 544, 765, 766
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 589
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 2 cut(s) 277, 812
BssECI CCNNGG 4 cut(s) 143, 315, 768, 918
BssMI GATC 5 cut(s) 128, 175, 242, 874, 1261
BssT1I CCWWGG 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 145, 770
Bst4CI ACNGT 7 cut(s) 319, 424, 447, 489, 605, 630, 809
BstAUI TGTACA 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 233, 268, 1210
BstDSI CCRYGG 2 cut(s) 315, 918
BstF5I GGATG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 131, 178, 245, 877, 1264
BstMAI GTCTC 2 cut(s) 1146, 1214
BstMBI GATC 5 cut(s) 128, 175, 242, 874, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 52, 579
BstNI CCWGG 2 cut(s) 145, 770
BstNSI RCATGY 1 cut(s) 1159
BstSCI CCNGG 2 cut(s) 143, 768
BstSFI CTRYAG 1 cut(s) 365
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 8 cut(s) 19, 22, 263, 348, 351, 585, 588, 591
BsuRI GGCC 4 cut(s) 46, 917, 978, 1208
BtgI CCRYGG 2 cut(s) 315, 918
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 610, 825
Cac8I GCNNGC 1 cut(s) 44
CciI TCATGA 1 cut(s) 285
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 543, 764
Csp6I GTAC 3 cut(s) 519, 561, 867
CviAII CATG 7 cut(s) 90, 286, 693, 712, 919, 1156, 1228
CviQI GTAC 3 cut(s) 519, 561, 867
DdeI CTNAG 3 cut(s) 233, 268, 1210
DpnI GATC 5 cut(s) 130, 177, 244, 876, 1263
DpnII GATC 5 cut(s) 128, 175, 242, 874, 1261
EaeI YGGCCR 1 cut(s) 915
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 918
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 543, 764
Eco53kI GAGCTC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 143, 768
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 7 cut(s) 93, 289, 696, 715, 922, 1159, 1231
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 4 cut(s) 135, 265, 751, 777
FatI CATG 7 cut(s) 89, 285, 692, 711, 918, 1155, 1227
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 8 cut(s) 8, 11, 252, 362, 365, 574, 577, 580
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 8 cut(s) 8, 11, 252, 362, 365, 574, 577, 580
FspBI CTAG 3 cut(s) 48, 948, 1124
GlaI GCGC 1 cut(s) 41
GluI GCNGC 8 cut(s) 8, 11, 252, 362, 365, 574, 577, 580
GsaI CCCAGC 1 cut(s) 788
HaeIII GGCC 4 cut(s) 46, 917, 978, 1208
HhaI GCGC 1 cut(s) 42
Hin1II CATG 7 cut(s) 93, 289, 696, 715, 922, 1159, 1231
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HindIII AAGCTT 2 cut(s) 1083, 1140
HinfI GANTC 4 cut(s) 148, 400, 429, 854
HphI GGTGA 7 cut(s) 123, 498, 800, 908, 948, 1081, 1102
Hpy166II GTNNAC 2 cut(s) 450, 546
Hpy188I TCNGA 3 cut(s) 236, 381, 652
Hpy188III TCNNGA 4 cut(s) 286, 390, 1240, 1272
Hpy8I GTNNAC 2 cut(s) 450, 546
HpyAV CCTTC 3 cut(s) 283, 968, 1129
HpyCH4III ACNGT 7 cut(s) 319, 424, 447, 489, 605, 630, 809
HpyCH4V TGCA 5 cut(s) 7, 293, 367, 750, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 579
HpyF3I CTNAG 3 cut(s) 233, 268, 1210
Hsp92II CATG 7 cut(s) 93, 289, 696, 715, 922, 1159, 1231
HspAI GCGC 1 cut(s) 40
KflI GGGWCCC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 5 cut(s) 128, 175, 242, 874, 1261
LmnI GCTCC 3 cut(s) 60, 922, 1249
Lsp1109I GCAGC 8 cut(s) 19, 22, 263, 348, 351, 585, 588, 591
LweI GCATC 2 cut(s) 22, 734
MaeI CTAG 3 cut(s) 48, 948, 1124
MaeIII GTNAC 3 cut(s) 471, 599, 644
MalI GATC 5 cut(s) 130, 177, 244, 876, 1263
MboI GATC 5 cut(s) 128, 175, 242, 874, 1261
MhlI GDGCHC 2 cut(s) 386, 1131
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 8 cut(s) 79, 170, 227, 374, 417, 833, 931, 1215
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 3 cut(s) 157, 409, 438
MmeI TCCRAC 2 cut(s) 471, 981
Mox20I TGGCCA 1 cut(s) 917
Mph1103I ATGCAT 1 cut(s) 1161
MscI TGGCCA 1 cut(s) 917
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 1 cut(s) 966
MspR9I CCNGG 2 cut(s) 145, 770
Mva1269I GAATGC 2 cut(s) 57, 295
MvaI CCWGG 2 cut(s) 145, 770
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 52, 579
NcoI CCATGG 1 cut(s) 918
NdeII GATC 5 cut(s) 128, 175, 242, 874, 1261
NlaIII CATG 7 cut(s) 93, 289, 696, 715, 922, 1159, 1231
NlaIV GGNNCC 3 cut(s) 544, 765, 766
NmuCI GTSAC 1 cut(s) 599
NsiI ATGCAT 1 cut(s) 1161
NspI RCATGY 1 cut(s) 1159
PagI TCATGA 1 cut(s) 285
PceI AGGCCT 1 cut(s) 46
PctI GAATGC 2 cut(s) 57, 295
PfeI GAWTC 1 cut(s) 854
PkrI GCNGC 8 cut(s) 9, 12, 253, 363, 366, 575, 578, 581
PleI GAGTC 3 cut(s) 156, 408, 437
PpsI GAGTC 3 cut(s) 156, 408, 437
PpuMI RGGWCCY 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 143, 768
PspFI CCCAGC 1 cut(s) 784
PspGI CCWGG 2 cut(s) 143, 768
PspN4I GGNNCC 3 cut(s) 544, 765, 766
PspPI GGNCC 2 cut(s) 543, 764
PspPPI RGGWCCY 1 cut(s) 764
PstI CTGCAG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 966
RsaI GTAC 3 cut(s) 520, 562, 868
RsaNI GTAC 3 cut(s) 519, 561, 867
RseI CAYNNNNRTG 1 cut(s) 663
SacI GAGCTC 1 cut(s) 386
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 8 cut(s) 8, 11, 252, 362, 365, 574, 577, 580
Sau3AI GATC 5 cut(s) 128, 175, 242, 874, 1261
Sau96I GGNCC 2 cut(s) 543, 764
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 3 cut(s) 157, 409, 438
ScrFI CCNGG 2 cut(s) 145, 770
SduI GDGCHC 2 cut(s) 386, 1131
SfaNI GCATC 2 cut(s) 22, 734
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 543, 764
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 352, 1112
SmoI CTYRAG 2 cut(s) 352, 1112
Sse9I AATT 8 cut(s) 79, 170, 227, 374, 417, 833, 931, 1215
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 2 cut(s) 460, 615
SspI AATATT 2 cut(s) 686, 754
SspMI CTAG 3 cut(s) 48, 948, 1124
SstI GAGCTC 1 cut(s) 386
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 143, 768
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 7 cut(s) 319, 424, 447, 489, 605, 630, 809
TaqI TCGA 2 cut(s) 343, 389
TasI AATT 8 cut(s) 79, 170, 227, 374, 417, 833, 931, 1215
TatI WGTACW 2 cut(s) 560, 866
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 610, 825
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 8 cut(s) 7, 10, 251, 361, 364, 573, 576, 579
Tsp45I GTSAC 1 cut(s) 599
TspRI CASTG 2 cut(s) 610, 825
VpaK11BI GGWCC 2 cut(s) 543, 764
XapI RAATTY 3 cut(s) 79, 170, 374
XceI RCATGY 1 cut(s) 1159
XspI CTAG 3 cut(s) 48, 948, 1124
ZrmI AGTACT 1 cut(s) 868
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.