Rh1DG236600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012879
Physical Location & Seq
Reverse (-)
44984938 .. 44988242
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG236600.1

Sequence Viewer

Length: 1341 bp
ATGTGTTCTTCTAGTTCTTCATGCTCATACAAGAATGTGCATCAGAAAAAGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAATTCCAATTCATGTTCTTCAAGTGGGTTCAAATCATTTCCAAGAAAACCACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTAGCAAGTTACATAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACTGCAGTAAAAACTCCCTCCCTTTTACCACGGAGCCTCTCAGGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTATTCAAACTCAAGTCCAAATCAGTGTGAAGGTCAAAGATATCCTACGGTGGACATCATTTCGCGACGAGAGGTTACCTCAATCACTGCCGTGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCACCGTAACAGAGTCCACAACTACTACTACTACTTGTAGTAATAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGCGGAGTTTTTACCGTCTCCGTTTGGTGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCATGGAGGCTACGGCAGGGACAGCAAGATGCGGTGAATTGGACCCCAAGGTTGAGGTGCTATTTTGTGATGAAGATGAACAACACAGCCCAGTTTCTGTGCTCCATTTTCAATTTGGGGAAGACGATGAAGAGGCGTTTTCGACTACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCACTTTGAGAGTCTTGCCAACCTAGACGCTGATTTCGACTCATGGTTGTCACCGGAAGAAGGTATCAACTTCGAAGAAGAAGAAGAAGAGCATGGAATTGAAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGCTGTGAGGACGAAATGGAAGACAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGTTTTGATTGGGAGATTGTTAGCAAAGCAAAAGCTTGGATTAGTGGGGAAAATATTGCACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCAAAAAGGAGGGAAGTGGCTTAACAAGTTTGAGGAAGAGAAAGAGGAGTTGGCTTTAAAAATCCAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTTGGTTGATCTCTTAATGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

50.7

Weight (kDa)

5.26

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 444, 596
AciI CCGC 4 cut(s) 343, 594, 596, 687
AclWI GGATC 1 cut(s) 866
AcsI RAATTY 3 cut(s) 103, 652, 988
AcuI CTGAAG 1 cut(s) 1048
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 4 cut(s) 620, 644, 923, 1176
AgsI TTSAA 6 cut(s) 123, 133, 386, 767, 965, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
AleI CACNNNNGTG 1 cut(s) 469
AluBI AGCT 5 cut(s) 360, 1008, 1023, 1142, 1315
AluI AGCT 5 cut(s) 360, 1008, 1023, 1142, 1315
Alw21I GWGCWC 4 cut(s) 362, 759, 1084, 1191
Alw26I GTCTC 1 cut(s) 615
Alw44I GTGCAC 1 cut(s) 1080
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1080
ApeKI GCWGC 2 cut(s) 236, 558
ApoI RAATTY 3 cut(s) 103, 652, 988
ArsI GACNNNNNNTTYG 2 cut(s) 881, 913
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 5 cut(s) 480, 485, 627, 701, 906
AsuII TTCGAA 1 cut(s) 936
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 1084
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 783, 1047
Bbv12I GWGCWC 4 cut(s) 362, 759, 1084, 1191
BbvI GCAGC 2 cut(s) 248, 570
BccI CCATC 1 cut(s) 1100
BceAI ACGGC 3 cut(s) 454, 684, 1274
BcgI CGANNNNNNTGC 2 cut(s) 826, 860
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 4 cut(s) 12, 207, 887, 1005
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 237, 344, 559
BlsI GCNGC 3 cut(s) 238, 345, 560
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 332, 699
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 3 cut(s) 49, 248, 674
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 2 cut(s) 783, 1047
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 936
BpuEI CTTGAG 4 cut(s) 68, 375, 1205, 1316
BsaJI CCNNGG 5 cut(s) 326, 470, 594, 657, 702
BsaWI WCCGGW 1 cut(s) 916
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 644, 923, 1176
Bse1I ACTGG 2 cut(s) 262, 746
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 5 cut(s) 326, 470, 594, 657, 702
BseGI GGATG 2 cut(s) 288, 1315
BseLI CCNNNNNNNGG 4 cut(s) 620, 644, 923, 1176
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 2 cut(s) 267, 351
BseNI ACTGG 2 cut(s) 262, 746
BseRI GAGGAG 1 cut(s) 1277
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 2 cut(s) 248, 570
Bsh1236I CGCG 2 cut(s) 444, 596
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 4 cut(s) 362, 759, 1084, 1191
BsiSI CCGG 1 cut(s) 917
BslFI GGGAC 2 cut(s) 688, 1194
BslI CCNNNNNNNGG 4 cut(s) 620, 644, 923, 1176
BsmAI GTCTC 1 cut(s) 615
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 688, 1194
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 936
Bsp1286I GDGCHC 4 cut(s) 362, 759, 1084, 1191
Bsp143I GATC 3 cut(s) 227, 858, 1324
Bsp19I CCATGG 1 cut(s) 657
Bsp68I TCGCGA 1 cut(s) 444
BspACI CCGC 4 cut(s) 343, 594, 596, 687
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 266, 350
BspFNI CGCG 2 cut(s) 444, 596
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 332, 699
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 866
BspQI GCTCTTC 1 cut(s) 945
BspT104I TTCGAA 1 cut(s) 936
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 2 cut(s) 262, 746
BssECI CCNNGG 5 cut(s) 326, 470, 594, 657, 702
BssMI GATC 3 cut(s) 227, 858, 1324
BssT1I CCWWGG 2 cut(s) 657, 702
Bst4CI ACNGT 5 cut(s) 429, 517, 584, 609, 984
Bst6I CTCTTC 4 cut(s) 780, 945, 960, 1248
BstBI TTCGAA 1 cut(s) 936
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 253, 337
BstDSI CCRYGG 4 cut(s) 326, 470, 594, 657
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 2 cut(s) 288, 1315
BstFNI CGCG 2 cut(s) 444, 596
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 230, 861, 1327
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 3 cut(s) 227, 858, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 79, 677
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1084
BstUI CGCG 2 cut(s) 444, 596
BstV1I GCAGC 2 cut(s) 248, 570
BstV2I GAAGAC 2 cut(s) 783, 1047
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 4 cut(s) 326, 470, 594, 657
BtsCI GGATG 2 cut(s) 288, 1315
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 3 cut(s) 409, 464, 589
BtuMI TCGCGA 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 697
Cfr42I CCGCGG 1 cut(s) 597
CseI GACGC 1 cut(s) 899
Csp6I GTAC 1 cut(s) 501
CviAII CATG 8 cut(s) 21, 114, 271, 363, 639, 658, 906, 956
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 2 cut(s) 253, 337
DpnI GATC 3 cut(s) 229, 860, 1326
DpnII GATC 3 cut(s) 227, 858, 1324
DraI TTTAAA 1 cut(s) 1275
DraIII CACNNNGTG 1 cut(s) 641
Eam1104I CTCTTC 4 cut(s) 780, 945, 960, 1248
EarI CTCTTC 4 cut(s) 780, 945, 960, 1248
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 657, 702
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 697
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1048
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 652
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 657, 702
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 657, 702
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 8 cut(s) 24, 117, 274, 366, 642, 661, 909, 959
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 2 cut(s) 688, 1194
FatI CATG 8 cut(s) 20, 113, 270, 362, 638, 657, 905, 955
Fnu4HI GCNGC 3 cut(s) 237, 344, 559
FokI GGATG 2 cut(s) 275, 1322
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 559
FspBI CTAG 4 cut(s) 12, 207, 887, 1005
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 559
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 917
HgaI GACGC 1 cut(s) 899
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 642, 661, 909, 959
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1140
HinfI GANTC 3 cut(s) 524, 874, 902
HpaII CCGG 1 cut(s) 917
HphI GGTGA 5 cut(s) 480, 485, 627, 701, 906
Hpy166II GTNNAC 3 cut(s) 432, 528, 1082
Hpy188I TCNGA 2 cut(s) 45, 998
Hpy188III TCNNGA 3 cut(s) 271, 443, 1282
Hpy8I GTNNAC 3 cut(s) 432, 528, 1082
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 277, 403, 917
HpyCH4III ACNGT 5 cut(s) 429, 517, 584, 609, 984
HpyCH4V TGCA 7 cut(s) 40, 165, 302, 853, 1082, 1166, 1219
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 677
HpyF3I CTNAG 2 cut(s) 253, 337
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 642, 661, 909, 959
HspAI GCGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 3 cut(s) 227, 858, 1324
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 2 cut(s) 330, 762
Lsp1109I GCAGC 2 cut(s) 248, 570
LweI GCATC 3 cut(s) 49, 248, 674
MaeI CTAG 4 cut(s) 12, 207, 887, 1005
MaeIII GTNAC 5 cut(s) 213, 453, 517, 578, 912
MalI GATC 3 cut(s) 229, 860, 1326
MboI GATC 3 cut(s) 227, 858, 1324
MhlI GDGCHC 4 cut(s) 362, 759, 1084, 1191
MlyI GAGTC 3 cut(s) 533, 883, 896
MmeI TCCRAC 1 cut(s) 1035
MseI TTAA 4 cut(s) 1010, 1239, 1274, 1331
MslI CAYNNNNRTG 2 cut(s) 275, 469
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 917
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 2 cut(s) 444, 596
MwoI GCNNNNNNNGC 2 cut(s) 79, 677
NcoI CCATGG 1 cut(s) 657
NdeII GATC 3 cut(s) 227, 858, 1324
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 642, 661, 909, 959
NlaIV GGNNCC 2 cut(s) 332, 699
NmuCI GTSAC 2 cut(s) 578, 912
NruI TCGCGA 1 cut(s) 444
NspV TTCGAA 1 cut(s) 936
OliI CACNNNNGTG 1 cut(s) 469
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 945
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 560
PleI GAGTC 3 cut(s) 532, 882, 896
PpsI GAGTC 3 cut(s) 532, 882, 896
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 332, 699
PspPI GGNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 752
RruI TCGCGA 1 cut(s) 444
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 275, 469
SacI GAGCTC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 597
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 4 cut(s) 1010, 1239, 1274, 1331
SatI GCNGC 3 cut(s) 237, 344, 559
Sau3AI GATC 3 cut(s) 227, 858, 1324
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 3 cut(s) 533, 883, 896
SduI GDGCHC 4 cut(s) 362, 759, 1084, 1191
SfaNI GCATC 3 cut(s) 49, 248, 674
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 936
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 2 cut(s) 275, 469
SmlI CTYRAG 4 cut(s) 83, 390, 1184, 1295
SmoI CTYRAG 4 cut(s) 83, 390, 1184, 1295
SsiI CCGC 4 cut(s) 343, 594, 596, 687
SspI AATATT 1 cut(s) 1162
SspMI CTAG 4 cut(s) 12, 207, 887, 1005
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 2 cut(s) 657, 702
TaaI ACNGT 5 cut(s) 429, 517, 584, 609, 984
TaqI TCGA 3 cut(s) 797, 900, 936
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 1010, 1239, 1274, 1331
Tru9I TTAA 4 cut(s) 1010, 1239, 1274, 1331
TscAI CASTG 3 cut(s) 409, 471, 589
TseFI GTSAC 2 cut(s) 578, 912
TseI GCWGC 2 cut(s) 236, 558
Tsp45I GTSAC 2 cut(s) 578, 912
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 741, 747, 798
TspGWI ACGGA 2 cut(s) 343, 603
TspRI CASTG 3 cut(s) 409, 471, 589
VneI GTGCAC 1 cut(s) 1080
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 3 cut(s) 103, 652, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XspI CTAG 4 cut(s) 12, 207, 887, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.