Rmu_sc0001599.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001599.1
OG0012879
Physical Location & Seq
Reverse (-)
39492 .. 41622
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001599.1_g000008.1.cds

Sequence Viewer

Length: 1356 bp
atgtgttcttctagttcttcatgctcatacaagaatgtggatcagaaaaagccttttccaatagagcgcaggccaacaatgctcaaggatttcctcaatgaaaattccaattcatgttcttcaagtgtgttcaaatcatttccaagaaaaccacaacttgattgcaaagcaagaaacccaaatcccaaactcaataccaccattactagcaagttacatagaagcaggtcaaaagcagcatctaccacaatctcagcattccagtccttcatgaatgtggtaaaaaacatccaatttactgcagtaaaaactccctcccttttaccacggagcctctcacggcggctgtccaagaagagctcatggtcaaggaagcagagtcttcaaactcaagtccaaatcagtgtgaaagtcaaagatatcctacggtggacatcattccgcgatgagaggttacctcaatctctgccgtgggatttcgcttctttacctcatcattgtaccacagccaccaccgtaacagagtccacaactactattactacttgtagtaatagcagcaatgggtcaagttggtgtgacagtgattttaccgcggagtttttaccgtctccgtttggtggcaaaaatgagatgggtaaaaagtattcaccatgtgtcggcaggaattccatggaggctacggcagggacagcaagatgcggtgaattggaccccaaggttgaggtgctattttgtgatgaagatgaacaacacagcccagtttctgtgctcgattttcaatttggggaagacgatgaagaggcattttcgactacttttgaccaaagccttgccaatgtggagagaacgaaagaaatgcttatgcaaaggatcaagcactttgagagtcttgccaacctagacgctgatttcgactcatggttgtcaccggaagaaggtatcagcttcgaagaagaagaagaagagcatggaattgaagagagggcattggaactgttgaattttgtcagagcaactagcttaaaaccagagagctgtgaggacgaaatggaagataaactattgttggatttcttcagggaagaattgggtgcacaaagaaattatcaaacagatgatgggtttaattgggagatcgttagcaaagcaaaagcttggattagtgaggaaaatactggaccctttgagtggggacttgaccacaagaaagaagcctttgttagagatatgcataaaggagggaagtggcttaacaagtttgaggatgagaaagaggagttggctttacaaatcgagactgccgtgcttgagttcttggtggatgagctttcggttgatctcttattgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

51.36

Weight (kDa)

5.09

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 216
AccII CGCG 2 cut(s) 444, 596
AciI CCGC 5 cut(s) 343, 442, 594, 596, 702
AclWI GGATC 2 cut(s) 48, 881
AcsI RAATTY 3 cut(s) 103, 667, 1003
AcuI CTGAAG 1 cut(s) 1063
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1191
AgsI TTSAA 6 cut(s) 123, 133, 386, 782, 980, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 1265, 1297
AluBI AGCT 6 cut(s) 360, 948, 1023, 1038, 1157, 1330
AluI AGCT 6 cut(s) 360, 948, 1023, 1038, 1157, 1330
Alw21I GWGCWC 3 cut(s) 362, 774, 1099
Alw26I GTCTC 2 cut(s) 615, 1292
Alw44I GTGCAC 1 cut(s) 1095
AlwI GGATC 2 cut(s) 48, 881
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 2 cut(s) 236, 558
ApoI RAATTY 3 cut(s) 103, 667, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 712, 1181
AsuHPI GGTGA 3 cut(s) 642, 716, 921
AsuII TTCGAA 1 cut(s) 951
AvaII GGWCC 2 cut(s) 712, 1181
BaeGI GKGCMC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 374, 798
Bbv12I GWGCWC 3 cut(s) 362, 774, 1099
BbvI GCAGC 2 cut(s) 248, 570
BccI CCATC 2 cut(s) 628, 1115
BceAI ACGGC 4 cut(s) 356, 454, 699, 1289
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BcoDI GTCTC 2 cut(s) 615, 1292
BfaI CTAG 4 cut(s) 12, 207, 902, 1020
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 216
BisI GCNGC 3 cut(s) 237, 344, 559
BlsI GCNGC 3 cut(s) 238, 345, 560
Bme18I GGWCC 2 cut(s) 712, 1181
BmgT120I GGNCC 2 cut(s) 712, 1181
BmiI GGNNCC 3 cut(s) 332, 714, 1183
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 2 cut(s) 248, 689
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 2 cut(s) 374, 798
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 3 cut(s) 68, 375, 1331
BsaJI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BsaWI WCCGGW 1 cut(s) 931
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1191
Bse1I ACTGG 3 cut(s) 262, 761, 1183
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BseGI GGATG 3 cut(s) 288, 1273, 1330
BseLI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1191
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 262, 761, 1183
BseRI GAGGAG 1 cut(s) 1292
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 2 cut(s) 248, 570
Bsh1236I CGCG 2 cut(s) 444, 596
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 362, 774, 1099
BsiSI CCGG 1 cut(s) 932
BslFI GGGAC 2 cut(s) 703, 1209
BslI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1191
BsmAI GTCTC 2 cut(s) 615, 1292
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 703, 1209
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 3 cut(s) 362, 774, 1099
Bsp143I GATC 4 cut(s) 40, 873, 1137, 1339
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 5 cut(s) 343, 442, 594, 596, 702
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 2 cut(s) 444, 596
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 332, 714, 1183
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 48, 881
BspQI GCTCTTC 2 cut(s) 350, 960
BspT104I TTCGAA 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 3 cut(s) 262, 761, 1183
BssECI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BssMI GATC 4 cut(s) 40, 873, 1137, 1339
BssT1I CCWWGG 2 cut(s) 672, 717
Bst4CI ACNGT 5 cut(s) 429, 517, 584, 609, 999
Bst6I CTCTTC 4 cut(s) 350, 795, 960, 975
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 4 cut(s) 326, 470, 594, 672
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 288, 1273, 1330
BstFNI CGCG 2 cut(s) 444, 596
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 43, 876, 1140, 1342
BstMAI GTCTC 2 cut(s) 615, 1292
BstMBI GATC 4 cut(s) 40, 873, 1137, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 79, 692
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1099
BstUI CGCG 2 cut(s) 444, 596
BstV1I GCAGC 2 cut(s) 248, 570
BstV2I GAAGAC 2 cut(s) 374, 798
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 4 cut(s) 326, 470, 594, 672
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 288, 1273, 1330
BtsIMutI CAGTG 2 cut(s) 409, 589
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 712, 1181
Cfr42I CCGCGG 1 cut(s) 597
CseI GACGC 1 cut(s) 914
Csp6I GTAC 1 cut(s) 501
CviAII CATG 8 cut(s) 21, 114, 271, 363, 654, 673, 921, 971
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 253
DpnI GATC 4 cut(s) 42, 875, 1139, 1341
DpnII GATC 4 cut(s) 40, 873, 1137, 1339
DraIII CACNNNGTG 1 cut(s) 656
Eam1104I CTCTTC 4 cut(s) 350, 795, 960, 975
EarI CTCTTC 4 cut(s) 350, 795, 960, 975
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 672, 717
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 712, 1181
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1063
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 667
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 672, 717
EcoT22I ATGCAT 1 cut(s) 1236
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 672, 717
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 974
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 703, 1209
FatI CATG 8 cut(s) 20, 113, 270, 362, 653, 672, 920, 970
Fnu4HI GCNGC 3 cut(s) 237, 344, 559
FokI GGATG 3 cut(s) 275, 1280, 1337
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 559
FspBI CTAG 4 cut(s) 12, 207, 902, 1020
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 559
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 932
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 974
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1155
HinfI GANTC 4 cut(s) 379, 524, 889, 917
HpaII CCGG 1 cut(s) 932
HphI GGTGA 3 cut(s) 642, 716, 921
Hpy166II GTNNAC 3 cut(s) 432, 528, 1097
Hpy188I TCNGA 2 cut(s) 45, 1013
Hpy188III TCNNGA 2 cut(s) 271, 1297
Hpy8I GTNNAC 3 cut(s) 432, 528, 1097
HpyAV CCTTC 2 cut(s) 277, 932
HpyCH4III ACNGT 5 cut(s) 429, 517, 584, 609, 999
HpyCH4V TGCA 5 cut(s) 165, 302, 868, 1097, 1234
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 692
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 974
HspAI GCGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 4 cut(s) 40, 873, 1137, 1339
LguI GCTCTTC 2 cut(s) 350, 960
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 2 cut(s) 248, 570
LweI GCATC 2 cut(s) 248, 689
MaeI CTAG 4 cut(s) 12, 207, 902, 1020
MaeIII GTNAC 5 cut(s) 213, 453, 517, 578, 927
MalI GATC 4 cut(s) 42, 875, 1139, 1341
MboI GATC 4 cut(s) 40, 873, 1137, 1339
MhlI GDGCHC 3 cut(s) 362, 774, 1099
MlyI GAGTC 4 cut(s) 388, 533, 898, 911
MmeI TCCRAC 1 cut(s) 1050
Mph1103I ATGCAT 1 cut(s) 1236
MseI TTAA 3 cut(s) 1025, 1128, 1254
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 2 cut(s) 444, 596
MwoI GCNNNNNNNGC 2 cut(s) 79, 692
NcoI CCATGG 1 cut(s) 672
NdeII GATC 4 cut(s) 40, 873, 1137, 1339
NlaIII CATG 8 cut(s) 24, 117, 274, 366, 657, 676, 924, 974
NlaIV GGNNCC 3 cut(s) 332, 714, 1183
NmuCI GTSAC 2 cut(s) 578, 927
NsiI ATGCAT 1 cut(s) 1236
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 2 cut(s) 350, 960
PcsI WCGNNNNNNNCGW 2 cut(s) 912, 1302
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 560
PleI GAGTC 4 cut(s) 387, 532, 897, 911
PpsI GAGTC 4 cut(s) 387, 532, 897, 911
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 332, 714, 1183
PspPI GGNCC 2 cut(s) 712, 1181
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 767
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 597
SapI GCTCTTC 2 cut(s) 350, 960
SaqAI TTAA 3 cut(s) 1025, 1128, 1254
SatI GCNGC 3 cut(s) 237, 344, 559
Sau3AI GATC 4 cut(s) 40, 873, 1137, 1339
Sau96I GGNCC 2 cut(s) 712, 1181
SchI GAGTC 4 cut(s) 388, 533, 898, 911
SduI GDGCHC 3 cut(s) 362, 774, 1099
SfaNI GCATC 2 cut(s) 248, 689
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 951
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 2 cut(s) 712, 1181
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 83, 390, 1310
SmoI CTYRAG 3 cut(s) 83, 390, 1310
SsiI CCGC 5 cut(s) 343, 442, 594, 596, 702
SspMI CTAG 4 cut(s) 12, 207, 902, 1020
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 2 cut(s) 672, 717
TaaI ACNGT 5 cut(s) 429, 517, 584, 609, 999
TaqI TCGA 5 cut(s) 774, 812, 915, 951, 1296
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1025, 1128, 1254
Tru9I TTAA 3 cut(s) 1025, 1128, 1254
TscAI CASTG 2 cut(s) 409, 589
TseFI GTSAC 2 cut(s) 578, 927
TseI GCWGC 2 cut(s) 236, 558
Tsp45I GTSAC 2 cut(s) 578, 927
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 756, 762, 813
TspGWI ACGGA 2 cut(s) 343, 603
TspRI CASTG 2 cut(s) 409, 589
VneI GTGCAC 1 cut(s) 1095
VpaK11BI GGWCC 2 cut(s) 712, 1181
XapI RAATTY 3 cut(s) 103, 667, 1003
XspI CTAG 4 cut(s) 12, 207, 902, 1020
Zsp2I ATGCAT 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.