Rh1CG223400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012879
Physical Location & Seq
Reverse (-)
47383407 .. 47386797
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG223400.1

Sequence Viewer

Length: 1371 bp
ATGTGTTCTTCTAGTTCTTCATGCTCATACAAGAATGTGGATCAGAAAAAGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGATAATTCCAATTCATGTTCTTCAAGTGTGTTCAAATCATTTCCAAGAAAACCACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTAGCAAGTTACATAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACTGCAGTAAAAACTCCCTCCCTTTTACCACGGAGCCTCTCACGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTCTTCAAACTCAAGTCCAAATCAGTGTGAAAGTCAAAGATATCCTACGGTGGACATCATTCCGCGATGAGAGGTTACCTCAATCTCTGCCATGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCACCATAACAGAGTCCACAACTACTACTACTACTTGTAGTAATATCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGCGGAGTTTTTACCGTCTCCGTTTGGTGGTAAAAATGAGATGGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCATGGAGGCTACGGCAGGGACAGCAAGATGCGGTGAATTGGACCCCAAGGTTGAGGTGCTATTTTGTGATGAAGATGAACAACACAGCCCAGTTTCTGTGCTTGATTTTCAATTTGGGGAAGACGATGAAGAGGCATTTTCAACTACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCACTTTGAGAGTCTTGCCAACCTAGACGCTGATTTCGACTCATGGTTGTCACCGGAAGAAGGTATCAACTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCATGGAATTATAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGTTGTGAGGATGAAATGGAAGATAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGGTTTAATTGGGAGATGGTTAGCAAAGCAAAAGCTTGGATTAGTGAGGAAAATACTGCACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCATAAAGGAGGGAAGTGGCTTAACAAGTTTGAGGATGAGAAAGAGGAGTTGGCTTTACAAATCGAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTCGGTTGATCTCTTATTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

52.04

Weight (kDa)

4.97

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 444, 596
AciI CCGC 5 cut(s) 343, 442, 594, 596, 702
AclWI GGATC 2 cut(s) 48, 881
AcsI RAATTY 2 cut(s) 667, 1018
AcuI CTGAAG 1 cut(s) 1078
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1206
AgsI TTSAA 6 cut(s) 123, 133, 386, 782, 813, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 1280, 1312
AluBI AGCT 4 cut(s) 360, 1038, 1172, 1345
AluI AGCT 4 cut(s) 360, 1038, 1172, 1345
Alw21I GWGCWC 3 cut(s) 362, 1114, 1221
Alw26I GTCTC 2 cut(s) 615, 1307
Alw44I GTGCAC 1 cut(s) 1110
AlwI GGATC 2 cut(s) 48, 881
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1110
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 667, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 5 cut(s) 480, 485, 642, 716, 921
AsuII TTCGAA 1 cut(s) 951
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 1114
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 374, 798
Bbv12I GWGCWC 3 cut(s) 362, 1114, 1221
BbvI GCAGC 1 cut(s) 248
BccI CCATC 3 cut(s) 628, 1130, 1147
BceAI ACGGC 3 cut(s) 356, 699, 1304
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BcoDI GTCTC 2 cut(s) 615, 1307
BfaI CTAG 4 cut(s) 12, 207, 902, 1035
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 237, 344
BlsI GCNGC 2 cut(s) 238, 345
Bme18I GGWCC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 2 cut(s) 332, 714
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 2 cut(s) 248, 689
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 2 cut(s) 374, 798
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 4 cut(s) 68, 375, 1235, 1346
BsaJI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BsaWI WCCGGW 1 cut(s) 931
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1206
Bse1I ACTGG 2 cut(s) 262, 761
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BseGI GGATG 4 cut(s) 288, 1066, 1288, 1345
BseLI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1206
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 262, 761
BseRI GAGGAG 1 cut(s) 1307
BseSI GKGCMC 1 cut(s) 1114
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 1179
Bsh1236I CGCG 2 cut(s) 444, 596
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 362, 1114, 1221
BsiSI CCGG 1 cut(s) 932
BslFI GGGAC 2 cut(s) 703, 1224
BslI CCNNNNNNNGG 4 cut(s) 620, 659, 938, 1206
BsmAI GTCTC 2 cut(s) 615, 1307
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 703, 1224
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 3 cut(s) 362, 1114, 1221
Bsp143I GATC 4 cut(s) 40, 227, 873, 1354
Bsp19I CCATGG 2 cut(s) 470, 672
BspACI CCGC 5 cut(s) 343, 442, 594, 596, 702
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 2 cut(s) 444, 596
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 332, 714
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 2 cut(s) 48, 881
BspQI GCTCTTC 1 cut(s) 975
BspT104I TTCGAA 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 2 cut(s) 262, 761
BssECI CCNNGG 5 cut(s) 326, 470, 594, 672, 717
BssMI GATC 4 cut(s) 40, 227, 873, 1354
BssT1I CCWWGG 3 cut(s) 470, 672, 717
Bst4CI ACNGT 4 cut(s) 429, 584, 609, 1014
Bst6I CTCTTC 2 cut(s) 795, 975
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 4 cut(s) 326, 470, 594, 672
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 4 cut(s) 288, 1066, 1288, 1345
BstFNI CGCG 2 cut(s) 444, 596
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 43, 230, 876, 1357
BstMAI GTCTC 2 cut(s) 615, 1307
BstMBI GATC 4 cut(s) 40, 227, 873, 1354
BstMWI GCNNNNNNNGC 2 cut(s) 79, 692
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1114
BstUI CGCG 2 cut(s) 444, 596
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 2 cut(s) 374, 798
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 4 cut(s) 326, 470, 594, 672
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 4 cut(s) 288, 1066, 1288, 1345
BtsIMutI CAGTG 2 cut(s) 409, 589
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 712
Cfr42I CCGCGG 1 cut(s) 597
CseI GACGC 1 cut(s) 914
Csp6I GTAC 1 cut(s) 501
CviAII CATG 9 cut(s) 21, 114, 271, 363, 471, 654, 673, 921, 986
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 253
DpnI GATC 4 cut(s) 42, 229, 875, 1356
DpnII GATC 4 cut(s) 40, 227, 873, 1354
DraIII CACNNNGTG 1 cut(s) 656
Eam1104I CTCTTC 2 cut(s) 795, 975
EarI CTCTTC 2 cut(s) 795, 975
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 3 cut(s) 470, 672, 717
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 712
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1078
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 667
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 3 cut(s) 470, 672, 717
EcoT22I ATGCAT 1 cut(s) 1251
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 3 cut(s) 470, 672, 717
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 9 cut(s) 24, 117, 274, 366, 474, 657, 676, 924, 989
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 703, 1224
FatI CATG 9 cut(s) 20, 113, 270, 362, 470, 653, 672, 920, 985
Fnu4HI GCNGC 2 cut(s) 237, 344
FokI GGATG 4 cut(s) 275, 1073, 1295, 1352
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 237, 344
FspBI CTAG 4 cut(s) 12, 207, 902, 1035
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 237, 344
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 932
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 69
Hin1II CATG 9 cut(s) 24, 117, 274, 366, 474, 657, 676, 924, 989
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1170
HinfI GANTC 4 cut(s) 379, 524, 889, 917
HpaII CCGG 1 cut(s) 932
HphI GGTGA 5 cut(s) 480, 485, 642, 716, 921
Hpy166II GTNNAC 3 cut(s) 432, 528, 1112
Hpy188I TCNGA 2 cut(s) 45, 1028
Hpy188III TCNNGA 2 cut(s) 271, 1312
Hpy8I GTNNAC 3 cut(s) 432, 528, 1112
HpyAV CCTTC 2 cut(s) 277, 932
HpyCH4III ACNGT 4 cut(s) 429, 584, 609, 1014
HpyCH4V TGCA 6 cut(s) 165, 302, 868, 1112, 1196, 1249
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 692
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 9 cut(s) 24, 117, 274, 366, 474, 657, 676, 924, 989
HspAI GCGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 4 cut(s) 40, 227, 873, 1354
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 8 cut(s) 55, 275, 649, 672, 774, 945, 1059, 1081
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 2 cut(s) 248, 689
MaeI CTAG 4 cut(s) 12, 207, 902, 1035
MaeIII GTNAC 4 cut(s) 213, 453, 578, 927
MalI GATC 4 cut(s) 42, 229, 875, 1356
MboI GATC 4 cut(s) 40, 227, 873, 1354
MhlI GDGCHC 3 cut(s) 362, 1114, 1221
MlyI GAGTC 4 cut(s) 388, 533, 898, 911
MmeI TCCRAC 1 cut(s) 1065
Mph1103I ATGCAT 1 cut(s) 1251
MseI TTAA 3 cut(s) 1040, 1143, 1269
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 2 cut(s) 444, 596
MwoI GCNNNNNNNGC 2 cut(s) 79, 692
NcoI CCATGG 2 cut(s) 470, 672
NdeII GATC 4 cut(s) 40, 227, 873, 1354
NlaIII CATG 9 cut(s) 24, 117, 274, 366, 474, 657, 676, 924, 989
NlaIV GGNNCC 2 cut(s) 332, 714
NmuCI GTSAC 2 cut(s) 578, 927
NsiI ATGCAT 1 cut(s) 1251
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 975
PcsI WCGNNNNNNNCGW 2 cut(s) 912, 1317
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 238, 345
PleI GAGTC 4 cut(s) 387, 532, 897, 911
PpsI GAGTC 4 cut(s) 387, 532, 897, 911
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 332, 714
PspPI GGNCC 1 cut(s) 712
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 767
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 597
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 3 cut(s) 1040, 1143, 1269
SatI GCNGC 2 cut(s) 237, 344
Sau3AI GATC 4 cut(s) 40, 227, 873, 1354
Sau96I GGNCC 1 cut(s) 712
SchI GAGTC 4 cut(s) 388, 533, 898, 911
SduI GDGCHC 3 cut(s) 362, 1114, 1221
SfaNI GCATC 2 cut(s) 248, 689
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 951
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 4 cut(s) 83, 390, 1214, 1325
SmoI CTYRAG 4 cut(s) 83, 390, 1214, 1325
SsiI CCGC 5 cut(s) 343, 442, 594, 596, 702
SspMI CTAG 4 cut(s) 12, 207, 902, 1035
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 3 cut(s) 470, 672, 717
TaaI ACNGT 4 cut(s) 429, 584, 609, 1014
TaqI TCGA 3 cut(s) 915, 951, 1311
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1040, 1143, 1269
Tru9I TTAA 3 cut(s) 1040, 1143, 1269
TscAI CASTG 2 cut(s) 409, 589
TseFI GTSAC 2 cut(s) 578, 927
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 578, 927
TspDTI ATGAA 8 cut(s) 9, 102, 259, 287, 756, 762, 813, 1077
TspGWI ACGGA 2 cut(s) 343, 603
TspRI CASTG 2 cut(s) 409, 589
VneI GTGCAC 1 cut(s) 1110
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 2 cut(s) 667, 1018
XspI CTAG 4 cut(s) 12, 207, 902, 1035
Zsp2I ATGCAT 1 cut(s) 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.