AT4G00880

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011864
Physical Location & Seq
Reverse (-)
366373 .. 367274
902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00880.1

Sequence Viewer

Length: 369 bp
ATGGGTAACGGAGACAAAGTCATGAGCCACTGGAGCTTCCACATCCCACGTCTCCATCATCATGAGCATGATCATGAAAAGGTACCAAAAGGGTGTTTGGCAGTGAAGGTAGGACAAGGAGAAGAGCAAGAGAGATTTGTGATTCCCGTTATGTACTTTAATCATCCTTTGTTTGGACAACTCTTGAAGGAAGCTGAAGAAGAGTTTGGTTTTGCTCAAAAAGGGACAATCACGATCCCTTGTCACGTTGAGGAGTTTAGGTATGTTCAAGGATTGATCGATCGAGAAAACACTAGATTTCTCGGTACTAATCTCCTTGATCATCACCATCATCATCACAACCATCTCATCCGGTGTTTTAGGGTTTGA

Protein Analysis

122

Amino Acids

14.39

Weight (kDa)

6.58

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 90 8.5e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 82
AclWI GGATC 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 3 cut(s) 84, 155, 307
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 187, 269
AjiI CACGTC 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 2 cut(s) 36, 194
AluI AGCT 2 cut(s) 36, 194
Alw26I GTCTC 2 cut(s) 6, 56
AlwI GGATC 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 82
BccI CCATC 3 cut(s) 63, 336, 351
BclI TGATCA 2 cut(s) 70, 319
BcoDI GTCTC 2 cut(s) 6, 56
BfaI CTAG 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 3 cut(s) 33, 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 279
BseGI GGATG 3 cut(s) 42, 163, 348
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 6, 56
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 238
Bsp143I GATC 5 cut(s) 70, 234, 276, 280, 319
BspDI ATCGAT 1 cut(s) 279
BspHI TCATGA 3 cut(s) 21, 61, 73
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 35
BssMI GATC 5 cut(s) 70, 234, 276, 280, 319
Bst6I CTCTTC 2 cut(s) 117, 195
BstF5I GGATG 3 cut(s) 42, 163, 348
BstKTI GATC 5 cut(s) 73, 237, 279, 283, 322
BstMAI GTCTC 2 cut(s) 6, 56
BstMBI GATC 5 cut(s) 70, 234, 276, 280, 319
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 42, 163, 348
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 28, 108
CciI TCATGA 3 cut(s) 21, 61, 73
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 3 cut(s) 83, 154, 306
CviAII CATG 4 cut(s) 22, 62, 68, 74
CviJI RGCY 3 cut(s) 27, 36, 194
CviKI_1 RGCY 3 cut(s) 27, 36, 194
CviQI GTAC 3 cut(s) 83, 154, 306
DpnI GATC 5 cut(s) 72, 236, 278, 282, 321
DpnII GATC 5 cut(s) 70, 234, 276, 280, 319
Eam1104I CTCTTC 2 cut(s) 117, 195
EarI CTCTTC 2 cut(s) 117, 195
Eco57I CTGAAG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 25, 65, 71, 77
FaiI YATR 6 cut(s) 23, 63, 69, 75, 152, 264
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 21, 61, 67, 73
FbaI TGATCA 2 cut(s) 70, 319
FokI GGATG 3 cut(s) 29, 150, 335
FspBI CTAG 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 52
HapII CCGG 1 cut(s) 352
Hin1II CATG 4 cut(s) 25, 65, 71, 77
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 352
HphI GGTGA 1 cut(s) 317
Hpy188III TCNNGA 6 cut(s) 22, 62, 74, 184, 232, 284
HpyAV CCTTC 2 cut(s) 100, 181
HpyCH4IV ACGT 2 cut(s) 49, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 49, 246
Hsp92II CATG 4 cut(s) 25, 65, 71, 77
KpnI GGTACC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 70, 319
Kzo9I GATC 5 cut(s) 70, 234, 276, 280, 319
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 16, 365
MaeI CTAG 1 cut(s) 294
MaeII ACGT 2 cut(s) 49, 246
MaeIII GTNAC 2 cut(s) 5, 242
MalI GATC 5 cut(s) 72, 236, 278, 282, 321
MboI GATC 5 cut(s) 70, 234, 276, 280, 319
MboII GAAGA 3 cut(s) 134, 209, 212
MnlI CCTC 1 cut(s) 244
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 3 cut(s) 60, 66, 72
MspI CCGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 5 cut(s) 70, 234, 276, 280, 319
NlaIII CATG 4 cut(s) 25, 65, 71, 77
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 242
PagI TCATGA 3 cut(s) 21, 61, 73
PciSI GCTCTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 142
PflFI GACNNNGTC 1 cut(s) 17
Ple19I CGATCG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 17
PvuI CGATCG 1 cut(s) 283
RsaI GTAC 3 cut(s) 84, 155, 307
RsaNI GTAC 3 cut(s) 83, 154, 306
RseI CAYNNNNRTG 3 cut(s) 60, 66, 72
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 5 cut(s) 70, 234, 276, 280, 319
SetI ASST 7 cut(s) 38, 52, 84, 111, 196, 249, 263
SmiMI CAYNNNNRTG 3 cut(s) 60, 66, 72
SspMI CTAG 1 cut(s) 294
TaiI ACGT 2 cut(s) 52, 249
TaqI TCGA 2 cut(s) 279, 283
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 35, 108
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 35, 108
Tth111I GACNNNGTC 1 cut(s) 17
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.