Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011864

Physical Location & Seq

Genomic Coordinates Forward (+)

29700658 .. 29701286

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGTTTAGCGGCGACAGGGACAACAAACACCACCACCTCAATTTTCACCTTCACTTTCCCCACCTTCTTCATCACCATGTCAAGAACAACAAGGAGCCCAAAGACATTCCAAAGGGCTGTTTGGCCGTCATGGTGGGCCAGGGCGAGGAGCAACAGAGGTTTGTGATCCCTGTGATCTACATCAACCACCCACTCTTCATGCAGCTGTTGAAGGAAGCCGAGGAAGAGTATGGCTTTGATCAGAAGGGCCCAATCACCATTCCTTGTCACGTGGAGGAGTTCCGCACCGTTCAAGGCATGATCGATAGGGAGACTTCAGTCCACTGCCGTCACCACCATAATCAGCAGCAGCACCACCAACATCATCATGTCTTGTGTTTTAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

131

Amino Acids

15.43

Weight (kDa)

6.85

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00880
fragaria_vesca	FvH4_7g32600
malus_domestica	MD00G1036600.v1.1 MD01G1227100.v1.1 MD07G1156400.v1.1 MD07G1297400.v1.1
prunus_persica	Prupe.2G194600_v2.0.a1 Prupe.2G317100_v2.0.a1
pyrus_communis	pycom01g11040 pycom01g23520 pycom07g15310 pycom07g26980
rosa_chinensis	RchiOBHm_Chr1g0382491
rosa_laevigata	RLG00000026176
rosa_multiflora	Rmu_sc0000110.1_g000052 Rmu_sc0003696.1_g000003 Rmu_sc0003696.1_g000017
rosa_roxburghii	Rroxscaffold_4G00278010
rosa_wichuraiana	Rw1G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 286
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	303
AcvI	CACGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	214, 296
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	3 cut(s)	126, 139, 250
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	205, 349, 352
AspS9I	GGNCC	3 cut(s)	139, 250, 251
AsuHPI	GGTGA	4 cut(s)	41, 68, 250, 326
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	102, 254
BbrPI	CACGTG	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	217, 361, 364
BceAI	ACGGC	2 cut(s)	113, 315
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	13, 206, 350, 353
BlsI	GCNGC	4 cut(s)	14, 207, 351, 354
Bme1390I	CCNGG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	139, 250, 251
BmiI	GGNNCC	2 cut(s)	99, 252
BmrFI	CCNGG	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	142, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	142, 222
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	164, 293
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	217, 361, 364
BshFI	GGCC	3 cut(s)	128, 141, 252
BshVI	ATCGAT	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	128, 141, 252
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	102, 254
Bsp143I	GATC	4 cut(s)	168, 177, 241, 303
BspACI	CCGC	2 cut(s)	12, 286
BspANI	GGCC	3 cut(s)	128, 141, 252
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	99, 252
BspPI	GGATC	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	142, 222
BssMI	GATC	4 cut(s)	168, 177, 241, 303
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	203, 222
BstBAI	YACGTR	1 cut(s)	274
BstKTI	GATC	4 cut(s)	171, 180, 244, 306
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	168, 177, 241, 303
BstNI	CCWGG	1 cut(s)	143
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	217, 361, 364
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	128, 141, 252
BsuTUI	ATCGAT	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	139, 250, 251
ClaI	ATCGAT	1 cut(s)	306
CviAII	CATG	5 cut(s)	80, 133, 202, 301, 371
CviJI	RGCY	8 cut(s)	100, 120, 128, 141, 208, 221, 237, 252
CviKI_1	RGCY	8 cut(s)	100, 120, 128, 141, 208, 221, 237, 252
DpnI	GATC	4 cut(s)	170, 179, 243, 305
DpnII	GATC	4 cut(s)	168, 177, 241, 303
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	203, 222
EarI	CTCTTC	2 cut(s)	203, 222
Eco24I	GRGCYC	2 cut(s)	102, 254
Eco57I	CTGAAG	1 cut(s)	303
Eco72I	CACGTG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	102, 254
FaeI	CATG	5 cut(s)	83, 136, 205, 304, 374
FaiI	YATR	7 cut(s)	81, 134, 203, 234, 302, 342, 372
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	5 cut(s)	79, 132, 201, 300, 370
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	13, 206, 350, 353
FriOI	GRGCYC	2 cut(s)	102, 254
Fsp4HI	GCNGC	4 cut(s)	13, 206, 350, 353
GluI	GCNGC	4 cut(s)	13, 206, 350, 353
HaeIII	GGCC	3 cut(s)	128, 141, 252
Hin1II	CATG	5 cut(s)	83, 136, 205, 304, 374
HphI	GGTGA	4 cut(s)	41, 68, 250, 326
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	62, 77, 208, 241
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	83, 136, 205, 304, 374
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	168, 177, 241, 303
LmnI	GCTCC	2 cut(s)	97, 151
LpnPI	CCDG	4 cut(s)	4, 128, 155, 186
Lsp1109I	GCAGC	3 cut(s)	217, 361, 364
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	269, 332
MalI	GATC	4 cut(s)	170, 179, 243, 305
MboI	GATC	4 cut(s)	168, 177, 241, 303
MboII	GAAGA	3 cut(s)	62, 190, 239
MhlI	GDGCHC	2 cut(s)	102, 254
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	5 cut(s)	50, 142, 153, 217, 271
MslI	CAYNNNNRTG	2 cut(s)	78, 369
MspA1I	CMGCKG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	168, 177, 241, 303
NlaIII	CATG	5 cut(s)	83, 136, 205, 304, 374
NlaIV	GGNNCC	2 cut(s)	99, 252
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	269, 332
PkrI	GCNGC	4 cut(s)	14, 207, 351, 354
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	141
PspCI	CACGTG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	99, 252
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	3 cut(s)	139, 250, 251
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	78, 369
SatI	GCNGC	4 cut(s)	13, 206, 350, 353
Sau3AI	GATC	4 cut(s)	168, 177, 241, 303
Sau96I	GGNCC	3 cut(s)	139, 250, 251
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	102, 254
SetI	ASST	6 cut(s)	42, 54, 69, 164, 210, 276
SmiMI	CAYNNNNRTG	2 cut(s)	78, 369
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	12, 286
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	43
TauI	GCSGC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	269, 332
TseI	GCWGC	3 cut(s)	205, 349, 352
Tsp45I	GTSAC	2 cut(s)	269, 332
TspDTI	ATGAA	2 cut(s)	62, 190
TspRI	CASTG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.