FvH4_7g32600

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011864
Physical Location & Seq
Forward (+)
23409116 .. 23410431
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32600.t1

Sequence Viewer

Length: 369 bp
ATGGGCCTCCTCGGCAGCGGCGGCGGTGACAAAGTTCACCACCACCACCAGAGCCAGCTGAGCTTTCAGTTTCTGAAGAAAGAAGCGACGGACATCCCAAAAGGGTGTATGGCGGTGATGGTGGGCGAGGAGCAGAAGAGGTTTGTGATCCCGGTGGCTCACATCAACCACCCGCTGTTCTATCACCTTCTCAAGGAAGCGGAGAAGGAGTACGGTTTCGACCACGACGGTCCGATCACCATCCCTTGTCACGTAGAGGAGTTCCTCGCCGTGGAGGGGGAGATCTGCAAGGAGAAGTCGGCAGTCAACGATGAGGAGCACCACCACCATCACCACCATCACCATGTGTGGTGTTTCAAGGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

123

Amino Acids

13.98

Weight (kDa)

6.19

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 26 - 89 1.5e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 18, 21, 24, 113, 173, 200
AclWI GGATC 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 193, 271, 276
AgsI TTSAA 1 cut(s) 358
AluBI AGCT 2 cut(s) 58, 63
AluI AGCT 2 cut(s) 58, 63
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 4, 230
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 7 cut(s) 29, 38, 127, 176, 229, 323, 332
AvaII GGWCC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 27
BccI CCATC 4 cut(s) 112, 248, 336, 345
BceAI ACGGC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 12
BglII AGATCT 1 cut(s) 282
BisI GCNGC 3 cut(s) 16, 19, 22
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 17, 20, 23
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 4, 230
BmrFI CCNGG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 10, 270
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 271, 276
Bse8I GATNNNNATC 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 10, 270
BseGI GGATG 2 cut(s) 93, 240
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 193, 271, 276
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 3 cut(s) 143, 272, 329
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 193, 271, 276
BsnI GGCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 147, 234, 282
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 6 cut(s) 18, 21, 24, 113, 173, 200
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 51
BspPI GGATC 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 10, 270
BssMI GATC 3 cut(s) 147, 234, 282
Bst4CI ACNGT 2 cut(s) 215, 230
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 93, 240
BstKTI GATC 3 cut(s) 150, 237, 285
BstMBI GATC 3 cut(s) 147, 234, 282
BstMWI GCNNNNNNNGC 3 cut(s) 12, 21, 60
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 93, 240
Cac8I GCNNGC 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 4, 230
CpoI CGGWCCG 1 cut(s) 230
Csp6I GTAC 1 cut(s) 211
CspI CGGWCCG 1 cut(s) 230
CviAII CATG 1 cut(s) 344
CviJI RGCY 6 cut(s) 6, 54, 58, 63, 158, 362
CviKI_1 RGCY 6 cut(s) 6, 54, 58, 63, 158, 362
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 149, 236, 284
DpnII GATC 3 cut(s) 147, 234, 282
DraIII CACNNNGTG 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 191
FaeI CATG 1 cut(s) 347
FaiI YATR 3 cut(s) 110, 345, 365
FatI CATG 1 cut(s) 343
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 16, 19, 22
FokI GGATG 2 cut(s) 80, 227
Fsp4HI GCNGC 3 cut(s) 16, 19, 22
GluI GCNGC 3 cut(s) 16, 19, 22
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 152
Hin1II CATG 1 cut(s) 347
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 152
HphI GGTGA 7 cut(s) 29, 38, 127, 176, 229, 323, 332
Hpy166II GTNNAC 2 cut(s) 37, 307
Hpy188I TCNGA 2 cut(s) 75, 234
Hpy8I GTNNAC 2 cut(s) 37, 307
Hpy99I CGWCG 2 cut(s) 91, 230
HpyAV CCTTC 2 cut(s) 197, 199
HpyCH4III ACNGT 2 cut(s) 215, 230
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 21, 60
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 347
Kzo9I GATC 3 cut(s) 147, 234, 282
LmnI GCTCC 2 cut(s) 130, 316
LpnPI CCDG 3 cut(s) 62, 68, 165
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 26, 248
MalI GATC 3 cut(s) 149, 236, 284
MboI GATC 3 cut(s) 147, 234, 282
MboII GAAGA 2 cut(s) 88, 148
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 321
MnlI CCTC 8 cut(s) 17, 20, 121, 132, 250, 268, 275, 307
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 3 cut(s) 18, 58, 175
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 12, 21, 60
NciI CCSGG 1 cut(s) 152
NdeII GATC 3 cut(s) 147, 234, 282
NlaIII CATG 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 26, 248
PkrI GCNGC 3 cut(s) 17, 20, 23
Ppu21I YACGTR 1 cut(s) 253
PspPI GGNCC 2 cut(s) 4, 230
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 342
Rsr2I CGGWCCG 1 cut(s) 230
RsrII CGGWCCG 1 cut(s) 230
SatI GCNGC 3 cut(s) 16, 19, 22
Sau3AI GATC 3 cut(s) 147, 234, 282
Sau96I GGNCC 2 cut(s) 4, 230
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 321
SetI ASST 5 cut(s) 60, 65, 143, 189, 255
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SsiI CCGC 6 cut(s) 18, 21, 24, 113, 173, 200
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 215, 230
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 219
TauI GCSGC 2 cut(s) 21, 24
TseFI GTSAC 2 cut(s) 26, 248
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 2 cut(s) 26, 248
TspGWI ACGGA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.