pycom07g26980

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011864
Physical Location & Seq
Forward (+)
26838866 .. 26839767
902 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26980.2

Sequence Viewer

Length: 648 bp
ATGCAAATTAGTAATTCAAGCCCTAGCTCCTACGGCAGCTACTATATAAACACCAAACCCTCCCTCTTCACTAACCCCTCACCTTCTCCATTTCCATCAATATTTATCTCACCATCTCCGCTTCCGATCCGTGGCCATTTTCTTTCCTCTTCTTATAGCCCTAATTCAACAGCTTCAAGTTTTCCCAGTGTTGTCTTGCTCTCTAGGGGTTTCCTGGTTTTTCGGGGTTTTCGAGTTTTTGATATTCTTGGATTCGAAAATATGGGGTTTATCGCCGCCGACAGGGACAGCAAGCACCACCACAACCACCTGAACTTCCACCTCCACCTCCACTTCCCCCACCTTCTCCATCACCACCACGACAAGAACAGCAAGGAGCTGAAAGACATCCCGAAAGGGTGTATGGCAGTGATGGTTGGCCAGGGGGAGGATCGAGCAGAGGTTTGTGATTCCAGTGATCTACATCAACCACCCTCTCTTCATGCAGCTGCTGGAGGAGGCCGAGAAAGAGTACGGATTCGATCACAAAGGTCCGATCACTATTCCTTGCCACGTGGAGGAGTTTCGCACTGTTCAAGGCATGGTGGACAGGGAGACTTTGTTCCACAGTCATCATCACCCCCAGAACAACCATGCCTGGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

216

Amino Acids

23.76

Weight (kDa)

8.75

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 276
AclWI GGATC 2 cut(s) 121, 438
AcoI YGGCCR 2 cut(s) 133, 418
AcvI CACGTG 1 cut(s) 554
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 4 cut(s) 131, 282, 427, 557
AgsI TTSAA 4 cut(s) 18, 168, 177, 576
AjnI CCWGG 3 cut(s) 213, 420, 636
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 5 cut(s) 27, 39, 173, 379, 488
AluI AGCT 5 cut(s) 27, 39, 173, 379, 488
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 121, 438
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 3 cut(s) 133, 418, 499
ApeKI GCWGC 3 cut(s) 36, 485, 488
AspS9I GGNCC 1 cut(s) 531
AsuHPI GGTGA 4 cut(s) 72, 102, 344, 609
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 531
BalI TGGCCA 2 cut(s) 135, 420
BbrPI CACGTG 1 cut(s) 554
BbvI GCAGC 3 cut(s) 48, 475, 497
BccI CCATC 4 cut(s) 103, 121, 357, 406
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 3 cut(s) 215, 422, 638
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 24, 204
BisI GCNGC 4 cut(s) 37, 276, 486, 489
BlsI GCNGC 4 cut(s) 38, 277, 487, 490
Bme1390I CCNGG 3 cut(s) 215, 422, 638
Bme18I GGWCC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 531
BmrFI CCNGG 3 cut(s) 215, 422, 638
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 130, 421
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 282, 427, 557
Bse1I ACTGG 2 cut(s) 186, 453
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 3 cut(s) 215, 422, 638
BseDI CCNNGG 2 cut(s) 130, 421
BseGI GGATG 1 cut(s) 387
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 131, 282, 427, 557
BseNI ACTGG 2 cut(s) 186, 453
BseRI GAGGAG 2 cut(s) 510, 573
BseXI GCAGC 3 cut(s) 48, 475, 497
BshFI GGCC 3 cut(s) 135, 420, 501
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 131, 282, 427, 557
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 3 cut(s) 135, 420, 501
Bsp119I TTCGAA 1 cut(s) 255
Bsp143I GATC 5 cut(s) 126, 430, 457, 521, 535
BspACI CCGC 2 cut(s) 119, 276
BspANI GGCC 3 cut(s) 135, 420, 501
BspPI GGATC 2 cut(s) 121, 438
BspT104I TTCGAA 1 cut(s) 255
BsrI ACTGG 2 cut(s) 186, 453
BssECI CCNNGG 2 cut(s) 130, 421
BssMI GATC 5 cut(s) 126, 430, 457, 521, 535
Bst2UI CCWGG 3 cut(s) 215, 422, 638
Bst4CI ACNGT 2 cut(s) 572, 609
Bst6I CTCTTC 3 cut(s) 71, 154, 483
BstBAI YACGTR 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 5 cut(s) 129, 433, 460, 524, 538
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 5 cut(s) 126, 430, 457, 521, 535
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 3 cut(s) 215, 422, 638
BstSCI CCNGG 3 cut(s) 213, 420, 636
BstV1I GCAGC 3 cut(s) 48, 475, 497
BsuRI GGCC 3 cut(s) 135, 420, 501
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 4 cut(s) 193, 414, 460, 568
Cac8I GCNNGC 1 cut(s) 293
CaiI CAGNNNCTG 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 512
CviAII CATG 3 cut(s) 482, 581, 633
CviQI GTAC 1 cut(s) 512
DpnI GATC 5 cut(s) 128, 432, 459, 523, 537
DpnII GATC 5 cut(s) 126, 430, 457, 521, 535
EaeI YGGCCR 2 cut(s) 133, 418
Eam1104I CTCTTC 3 cut(s) 71, 154, 483
EarI CTCTTC 3 cut(s) 71, 154, 483
Eco47I GGWCC 1 cut(s) 531
Eco72I CACGTG 1 cut(s) 554
EcoRII CCWGG 3 cut(s) 213, 420, 636
FaeI CATG 3 cut(s) 485, 584, 636
FaiI YATR 8 cut(s) 45, 47, 156, 263, 404, 483, 582, 634
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 481, 580, 632
Fnu4HI GCNGC 4 cut(s) 37, 276, 486, 489
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 37, 276, 486, 489
FspBI CTAG 2 cut(s) 24, 204
GluI GCNGC 4 cut(s) 37, 276, 486, 489
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 3 cut(s) 135, 420, 501
Hin1II CATG 3 cut(s) 485, 584, 636
HinfI GANTC 3 cut(s) 252, 449, 517
HphI GGTGA 4 cut(s) 72, 102, 344, 609
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 2 cut(s) 126, 535
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 2 cut(s) 93, 353
HpyCH4III ACNGT 2 cut(s) 572, 609
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 2 cut(s) 4, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 3 cut(s) 485, 584, 636
Kzo9I GATC 5 cut(s) 126, 430, 457, 521, 535
LmnI GCTCC 2 cut(s) 32, 376
Lsp1109I GCAGC 3 cut(s) 48, 475, 497
MaeI CTAG 2 cut(s) 24, 204
MaeII ACGT 1 cut(s) 553
MalI GATC 5 cut(s) 128, 432, 459, 523, 537
MboI GATC 5 cut(s) 126, 430, 457, 521, 535
MboII GAAGA 3 cut(s) 58, 141, 470
MlsI TGGCCA 2 cut(s) 135, 420
MluCI AATT 3 cut(s) 6, 13, 163
MluNI TGGCCA 2 cut(s) 135, 420
Mox20I TGGCCA 2 cut(s) 135, 420
MscI TGGCCA 2 cut(s) 135, 420
Msp20I TGGCCA 2 cut(s) 135, 420
MspA1I CMGCKG 1 cut(s) 488
MspR9I CCNGG 3 cut(s) 215, 422, 638
MvaI CCWGG 3 cut(s) 215, 422, 638
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 5 cut(s) 126, 430, 457, 521, 535
NlaIII CATG 3 cut(s) 485, 584, 636
NmeAIII GCCGAG 1 cut(s) 527
NspV TTCGAA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 3 cut(s) 252, 449, 517
PkrI GCNGC 4 cut(s) 38, 277, 487, 490
PmaCI CACGTG 1 cut(s) 554
PmlI CACGTG 1 cut(s) 554
Ppu21I YACGTR 1 cut(s) 554
Psp6I CCWGG 3 cut(s) 213, 420, 636
PspCI CACGTG 1 cut(s) 554
PspGI CCWGG 3 cut(s) 213, 420, 636
PspPI GGNCC 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
SatI GCNGC 4 cut(s) 37, 276, 486, 489
Sau3AI GATC 5 cut(s) 126, 430, 457, 521, 535
Sau96I GGNCC 1 cut(s) 531
ScrFI CCNGG 3 cut(s) 215, 422, 638
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 531
Sse9I AATT 3 cut(s) 6, 13, 163
SsiI CCGC 2 cut(s) 119, 276
SspI AATATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 24, 204
StyD4I CCNGG 3 cut(s) 213, 420, 636
TaaI ACNGT 2 cut(s) 572, 609
TaiI ACGT 1 cut(s) 556
TaqI TCGA 4 cut(s) 232, 255, 433, 520
TasI AATT 3 cut(s) 6, 13, 163
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 252, 449, 517
TscAI CASTG 4 cut(s) 193, 414, 460, 575
TseI GCWGC 3 cut(s) 36, 485, 488
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 2 cut(s) 119, 529
TspRI CASTG 4 cut(s) 193, 414, 460, 575
VpaK11BI GGWCC 1 cut(s) 531
XspI CTAG 2 cut(s) 24, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.