MD07G1297400.v1.1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011864
Physical Location & Seq
Forward (+)
35727069 .. 35727473
405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1297400.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGGGTTTATCGCCGCCGACAGGGACAGCAAGCACCACCACAACCACCTGAACTTCCACCTCCACCTCCATTTCCCCCACCTTCTCCATCACCACCACGACAAGAACAGCAAGGAGCTGAAAGACATCCCGAAAGGGTGTATGGCGGTGATGGTTGGCCAGGGGGAGAATCAGCAGAGGTTTGTGATTCCAGTGATCTACATCAACCACCCTCTCTTCATGCAGCTGCTGGAGGAGGCCGAGAAAGAGTACGGATTCGATCACAAAGGTCCGATCACTATTCCTTGCCACGTGGAGGAGTTTCGCACCGTTCAAGGCATGGTGGACAGGGAGACTTCATTCCACGGTCATCATCACCATCACAACCACCACCATCAGCACCATGCCTGGTGTTTTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

15.93

Weight (kDa)

6.81

Isoelectric Point (pI)

20.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 33 - 105 2.7e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 146
AcoI YGGCCR 1 cut(s) 157
AcvI CACGTG 1 cut(s) 292
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 21, 295
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 2 cut(s) 159, 386
AluBI AGCT 2 cut(s) 118, 226
AluI AGCT 2 cut(s) 118, 226
Alw26I GTCTC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 2 cut(s) 157, 237
ApeKI GCWGC 2 cut(s) 223, 226
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 3 cut(s) 83, 160, 347
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 292
BbvI GCAGC 2 cut(s) 213, 235
BccI CCATC 4 cut(s) 96, 145, 366, 381
BciT130I CCWGG 2 cut(s) 161, 388
BcoDI GTCTC 1 cut(s) 326
BisI GCNGC 3 cut(s) 15, 224, 227
BlsI GCNGC 3 cut(s) 16, 225, 228
Bme1390I CCNGG 2 cut(s) 161, 388
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 161, 388
BpmI CTGGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 160, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 295
Bse1I ACTGG 1 cut(s) 191
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 2 cut(s) 161, 388
BseDI CCNNGG 2 cut(s) 160, 343
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 21, 295
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 2 cut(s) 248, 311
BseXI GCAGC 2 cut(s) 213, 235
BshFI GGCC 2 cut(s) 159, 239
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 21, 295
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 159, 239
Bsp143I GATC 3 cut(s) 195, 259, 273
BspACI CCGC 2 cut(s) 15, 146
BspANI GGCC 2 cut(s) 159, 239
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 160, 343
BssMI GATC 3 cut(s) 195, 259, 273
Bst2UI CCWGG 2 cut(s) 161, 388
Bst4CI ACNGT 2 cut(s) 310, 347
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 3 cut(s) 198, 262, 276
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 3 cut(s) 195, 259, 273
BstNI CCWGG 2 cut(s) 161, 388
BstSCI CCNGG 2 cut(s) 159, 386
BstV1I GCAGC 2 cut(s) 213, 235
BsuRI GGCC 2 cut(s) 159, 239
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 220, 319, 383
CviJI RGCY 4 cut(s) 118, 159, 226, 239
CviKI_1 RGCY 4 cut(s) 118, 159, 226, 239
CviQI GTAC 1 cut(s) 250
DpnI GATC 3 cut(s) 197, 261, 275
DpnII GATC 3 cut(s) 195, 259, 273
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 159, 386
FaeI CATG 3 cut(s) 223, 322, 386
FaiI YATR 4 cut(s) 143, 221, 320, 384
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 219, 318, 382
Fnu4HI GCNGC 3 cut(s) 15, 224, 227
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 15, 224, 227
GluI GCNGC 3 cut(s) 15, 224, 227
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 2 cut(s) 159, 239
Hin1II CATG 3 cut(s) 223, 322, 386
HinfI GANTC 3 cut(s) 169, 187, 255
HphI GGTGA 3 cut(s) 83, 160, 347
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 310, 347
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 223, 322, 386
Kzo9I GATC 3 cut(s) 195, 259, 273
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 7, 62, 146, 173, 204, 215, 313, 373, 400
Lsp1109I GCAGC 2 cut(s) 213, 235
MaeII ACGT 1 cut(s) 291
MalI GATC 3 cut(s) 197, 261, 275
MboI GATC 3 cut(s) 195, 259, 273
MboII GAAGA 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 159
MluNI TGGCCA 1 cut(s) 159
MnlI CCTC 7 cut(s) 71, 77, 171, 222, 226, 229, 289
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 2 cut(s) 161, 388
MvaI CCWGG 2 cut(s) 161, 388
NdeII GATC 3 cut(s) 195, 259, 273
NlaIII CATG 3 cut(s) 223, 322, 386
NmeAIII GCCGAG 1 cut(s) 265
PfeI GAWTC 3 cut(s) 169, 187, 255
PkrI GCNGC 3 cut(s) 16, 225, 228
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 159, 386
PspCI CACGTG 1 cut(s) 292
PspGI CCWGG 2 cut(s) 159, 386
PspPI GGNCC 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SatI GCNGC 3 cut(s) 15, 224, 227
Sau3AI GATC 3 cut(s) 195, 259, 273
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 161, 388
SetI ASST 9 cut(s) 51, 63, 69, 84, 120, 182, 228, 271, 294
SinI GGWCC 1 cut(s) 269
SsiI CCGC 2 cut(s) 15, 146
StyD4I CCNGG 2 cut(s) 159, 386
TaaI ACNGT 2 cut(s) 310, 347
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 258
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 3 cut(s) 169, 187, 255
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 223, 226
TspDTI ATGAA 2 cut(s) 208, 327
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.