pycom01g11040

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011864
Physical Location & Seq
Forward (+)
11849528 .. 11849899
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11040.1

Sequence Viewer

Length: 372 bp
ATGGGTAGCGGAGAGAGAAGTCTGAGAAATTTCCATCTTCACCTGCCGCATCTTCACCACCACCACCATCATCACGGTGGGAAGAAACAAGTGATTAGAGATGTTCCAAAAGGGTGTTTGGCAATCAAGGTGGGCCAGGGCAAAGAGCAACAGAGGTTTGTAATTCCTGTGATCTACTTCAATCACCCACTCTTCATACAGCTCTTGAAGGAAGCCGAGGAAGAGTATGGGTTTGATCAGAAGGGCACTATCACCATCCCTTGCCATGTGGAGGAGTTTAGGTCCGTCCAAGGCATGATCGATAGGGAGAAGTCCCTCCACCACCATCACCACCACCAGCACCACCACCATGTCGGGTGCTTTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

14.46

Weight (kDa)

8.89

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 29 - 99 4.2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 51
AciI CCGC 2 cut(s) 9, 47
AcsI RAATTY 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 2 cut(s) 181, 208
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 133, 282
AsuHPI GGTGA 5 cut(s) 32, 47, 176, 244, 320
AvaII GGWCC 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 248
BccI CCATC 4 cut(s) 42, 75, 263, 333
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 133, 282
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 136, 216, 289
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 136, 216, 289
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 248
BshFI GGCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 300
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 3 cut(s) 171, 235, 297
BspACI CCGC 2 cut(s) 9, 47
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 136, 216, 289
BssMI GATC 3 cut(s) 171, 235, 297
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 197, 216
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 3 cut(s) 174, 238, 300
BstMBI GATC 3 cut(s) 171, 235, 297
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 133, 282
ClaI ATCGAT 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 3 cut(s) 266, 295, 350
CviJI RGCY 3 cut(s) 135, 202, 215
CviKI_1 RGCY 3 cut(s) 135, 202, 215
DdeI CTNAG 1 cut(s) 23
DpnI GATC 3 cut(s) 173, 237, 299
DpnII GATC 3 cut(s) 171, 235, 297
Eam1104I CTCTTC 2 cut(s) 197, 216
EarI CTCTTC 2 cut(s) 197, 216
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 269, 298, 353
FaiI YATR 5 cut(s) 197, 228, 267, 296, 351
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 265, 294, 349
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 3 cut(s) 269, 298, 353
HphI GGTGA 5 cut(s) 32, 47, 176, 244, 320
Hpy188I TCNGA 2 cut(s) 24, 240
Hpy188III TCNNGA 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 202, 235
HpyCH4III ACNGT 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 269, 298, 353
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 171, 235, 297
LpnPI CCDG 5 cut(s) 56, 122, 149, 180, 350
LweI GCATC 1 cut(s) 58
MalI GATC 3 cut(s) 173, 237, 299
MboI GATC 3 cut(s) 171, 235, 297
MboII GAAGA 5 cut(s) 29, 44, 94, 184, 233
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 28, 162
MnlI CCTC 4 cut(s) 147, 211, 265, 326
MslI CAYNNNNRTG 2 cut(s) 75, 348
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NdeII GATC 3 cut(s) 171, 235, 297
NlaIII CATG 3 cut(s) 269, 298, 353
NmeAIII GCCGAG 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 282
RseI CAYNNNNRTG 2 cut(s) 75, 348
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 171, 235, 297
Sau96I GGNCC 2 cut(s) 133, 282
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 248
SetI ASST 5 cut(s) 45, 132, 158, 204, 284
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 75, 348
Sse9I AATT 2 cut(s) 28, 162
SsiI CCGC 2 cut(s) 9, 47
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 28, 162
TauI GCSGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.