Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003696.1

Orthogroup ID

OG0011864

Physical Location & Seq

Genomic Coordinates Forward (+)

71973 .. 72317

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003696.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggggttcatcggcggcggcggtgacaaggtgcaccaccaccaccacagccaccagaatcatctgagttttctgaagaaggaagcgatggacatcccaaaagggtgcatggcggtgatagtgggccagggcgaggagcagcagaggtttgtgattccggtggttcacatcaaccacccgctcttcattcagctgctggaggaagccgagaaggagtacggtttcgaccacgacggtccgatcactatcccgtgccacgtggaggagttcctcgccgttgagggcttgattgataaggagaagtcagcagcaccaccatcatcatcaccatgtgtggtgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

5.68

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00880
fragaria_vesca	FvH4_7g32600
malus_domestica	MD00G1036600.v1.1 MD01G1227100.v1.1 MD07G1156400.v1.1 MD07G1297400.v1.1
prunus_persica	Prupe.2G194600_v2.0.a1 Prupe.2G317100_v2.0.a1
pyrus_communis	pycom01g11040 pycom01g23520 pycom07g15310 pycom07g26980
rosa_chinensis	RchiOBHm_Chr1g0382491
rosa_laevigata	RLG00000026176
rosa_multiflora	Rmu_sc0000110.1_g000052 Rmu_sc0003696.1_g000003 Rmu_sc0003696.1_g000017
rosa_roxburghii	Rroxscaffold_4G00278010
rosa_wichuraiana	Rw1G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	5 cut(s)	15, 18, 21, 113, 179
AcuI	CTGAAG	1 cut(s)	95
AcvI	CACGTG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	133, 262
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	139, 193, 308
AspS9I	GGNCC	2 cut(s)	124, 236
AsuHPI	GGTGA	3 cut(s)	35, 127, 318
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	151, 180, 320
BccI	CCATC	2 cut(s)	82, 325
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	128
BisI	GCNGC	5 cut(s)	16, 19, 140, 194, 309
BlsI	GCNGC	5 cut(s)	17, 20, 141, 195, 310
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	124, 236
BmrFI	CCNGG	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	92, 245
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 262
Bse8I	GATNNNNATC	2 cut(s)	92, 245
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	93
BseJI	GATNNNNATC	2 cut(s)	92, 245
BseLI	CCNNNNNNNGG	2 cut(s)	133, 262
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	149, 278
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	151, 180, 320
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	133, 262
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	5 cut(s)	15, 18, 21, 113, 179
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	221, 236
Bst6I	CTCTTC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	151, 180, 320
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	124, 236
CpoI	CGGWCCG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	217
CspI	CGGWCCG	1 cut(s)	236
CviAII	CATG	2 cut(s)	109, 330
CviJI	RGCY	5 cut(s)	51, 126, 193, 206, 285
CviKI_1	RGCY	5 cut(s)	51, 126, 193, 206, 285
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DraIII	CACNNNGTG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	112, 333
FaiI	YATR	2 cut(s)	110, 331
FatI	CATG	2 cut(s)	108, 329
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	16, 19, 140, 194, 309
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	5 cut(s)	16, 19, 140, 194, 309
GluI	GCNGC	5 cut(s)	16, 19, 140, 194, 309
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	112, 333
HinfI	GANTC	2 cut(s)	58, 154
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	35, 127, 318
Hpy166II	GTNNAC	2 cut(s)	34, 166
Hpy188I	TCNGA	3 cut(s)	66, 75, 240
Hpy8I	GTNNAC	2 cut(s)	34, 166
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	73, 205
HpyCH4III	ACNGT	2 cut(s)	221, 236
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	34, 108
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	112, 333
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	68, 113, 140, 171, 182
Lsp1109I	GCAGC	3 cut(s)	151, 180, 320
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	242
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	88, 175
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	127, 138, 193, 256, 274, 281
MslI	CAYNNNNRTG	2 cut(s)	113, 328
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	2 cut(s)	112, 333
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	58, 154
PkrI	GCNGC	5 cut(s)	17, 20, 141, 195, 310
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	124, 236
PstNI	CAGNNNCTG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	113, 328
Rsr2I	CGGWCCG	1 cut(s)	236
RsrII	CGGWCCG	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	188
SatI	GCNGC	5 cut(s)	16, 19, 140, 194, 309
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	124, 236
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	4 cut(s)	33, 149, 195, 261
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	113, 328
SsiI	CCGC	5 cut(s)	15, 18, 21, 113, 179
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	221, 236
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	225
TauI	GCSGC	2 cut(s)	18, 21
TfiI	GAWTC	2 cut(s)	58, 154
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	3 cut(s)	139, 193, 308
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.