RLG00000026176

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011864
Physical Location & Seq
Reverse (-)
989947 .. 990321
375 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026176

Sequence Viewer

Length: 375 bp
ATGGGGTTCATCGGCGGCGGAGGTGACAAGGTGCACCACCACAGCCACCAGAATCATCTGAGTTTTCACTTTCTGAAGAAGGAAGCGATAGACATCCCAAAAGGGTGTATGGCGGTGATGGTAGGCCAGGGTGAGGAGCAGCAGAGGTTTGTGATTCCGGTGGTTCACATCAACCACCCGCTCTTCATTCAGCTGCTGGAGGAAGCCGAGAATGAGTACGGTTTTGAGCACGACGGTCCGATCACTATCCCGTGTCACGTGGAGGAGTTCCTCGCCGTTGAGGGCATGATTAATAAGGAGAAGTCGGCGGTCAACGCTGAGCAGCACACCACCATCATCATCACCATGTTTGGTGTTTTAGGGCTTGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

5.42

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 93 7.3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 5 cut(s) 15, 18, 113, 179, 308
AcuI CTGAAG 1 cut(s) 95
AcvI CACGTG 1 cut(s) 259
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 2 cut(s) 36, 231
Alw44I GTGCAC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 1 cut(s) 124
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 139, 193, 322
AseI ATTAAT 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 35, 127, 143, 334
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 36
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 36, 231
BbvI GCAGC 3 cut(s) 151, 180, 334
BccI CCATC 2 cut(s) 112, 341
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 128
BisI GCNGC 4 cut(s) 16, 140, 194, 323
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 4 cut(s) 17, 141, 195, 324
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 2 cut(s) 92, 245
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse8I GATNNNNATC 2 cut(s) 92, 245
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 2 cut(s) 92, 245
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 50, 309
BseRI GAGGAG 2 cut(s) 149, 278
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 3 cut(s) 151, 180, 334
BshFI GGCC 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 36, 231
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 36, 231
Bsp143I GATC 1 cut(s) 240
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 5 cut(s) 15, 18, 113, 179, 308
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 51, 310
BspQI GCTCTTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 221, 236
Bst6I CTCTTC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 59, 318
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 151, 180, 334
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 236
CpoI CGGWCCG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 217
CspI CGGWCCG 1 cut(s) 236
CviAII CATG 2 cut(s) 286, 346
CviJI RGCY 5 cut(s) 45, 126, 193, 206, 364
CviKI_1 RGCY 5 cut(s) 45, 126, 193, 206, 364
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 59, 318
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 289, 349
FaiI YATR 4 cut(s) 110, 287, 347, 371
FatI CATG 2 cut(s) 285, 345
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 16, 140, 194, 323
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 16, 140, 194, 323
GluI GCNGC 4 cut(s) 16, 140, 194, 323
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 289, 349
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 52, 154
HpaII CCGG 1 cut(s) 158
HphI GGTGA 4 cut(s) 35, 127, 143, 334
Hpy166II GTNNAC 3 cut(s) 34, 166, 313
Hpy188I TCNGA 3 cut(s) 60, 75, 240
Hpy8I GTNNAC 3 cut(s) 34, 166, 313
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 221, 236
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 59, 318
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 289, 349
Kzo9I GATC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 62, 113, 140, 171, 182
Lsp1109I GCAGC 3 cut(s) 151, 180, 334
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 23, 254
MalI GATC 1 cut(s) 242
MbiI CCGCTC 1 cut(s) 181
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 88, 175
MhlI GDGCHC 2 cut(s) 36, 231
MnlI CCTC 7 cut(s) 14, 127, 138, 193, 256, 274, 281
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 240
NlaIII CATG 2 cut(s) 289, 349
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 23, 254
PciSI GCTCTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 52, 154
PkrI GCNGC 4 cut(s) 17, 141, 195, 324
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 126
PspCI CACGTG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 344
Rsr2I CGGWCCG 1 cut(s) 236
RsrII CGGWCCG 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 16, 140, 194, 323
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 2 cut(s) 36, 231
SetI ASST 5 cut(s) 25, 33, 149, 195, 261
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 344
SsiI CCGC 5 cut(s) 15, 18, 113, 179, 308
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 221, 236
TaiI ACGT 1 cut(s) 261
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 52, 154
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 2 cut(s) 23, 254
TseI GCWGC 3 cut(s) 139, 193, 322
Tsp45I GTSAC 2 cut(s) 23, 254
TspDTI ATGAA 1 cut(s) 175
VneI GTGCAC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.