Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003696.1

Orthogroup ID

OG0011864

Physical Location & Seq

Genomic Coordinates Reverse (-)

7233 .. 7583

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003696.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggggttcatcggcggcggcattgacaaggtgcaccaccaccaccacagccaccagaatcatctgagttttcactttctgaagaaggaagcgatggacatcccaaaagggtgcatggcggtgatagtgggccagggcgaggagcagcagaggcttgtgattccggtggttcacatcaaccacccgctcttcattcagctgctggaggaagccgagaaggagtacggtttcgaccacgacggtccgatcactatcctgtgccacgtggaggagttcctcgccgttgagggcttgattgataaggagaagtcagcagcaccaccatcatcatcaccatgtgtggtgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

5.77

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00880
fragaria_vesca	FvH4_7g32600
malus_domestica	MD00G1036600.v1.1 MD01G1227100.v1.1 MD07G1156400.v1.1 MD07G1297400.v1.1
prunus_persica	Prupe.2G194600_v2.0.a1 Prupe.2G317100_v2.0.a1
pyrus_communis	pycom01g11040 pycom01g23520 pycom07g15310 pycom07g26980
rosa_chinensis	RchiOBHm_Chr1g0382491
rosa_laevigata	RLG00000026176
rosa_multiflora	Rmu_sc0000110.1_g000052 Rmu_sc0003696.1_g000003 Rmu_sc0003696.1_g000017
rosa_roxburghii	Rroxscaffold_4G00278010
rosa_wichuraiana	Rw1G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AciI	CCGC	4 cut(s)	15, 18, 119, 185
AcuI	CTGAAG	1 cut(s)	101
AcvI	CACGTG	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	139, 268
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	145, 199, 314
AspS9I	GGNCC	2 cut(s)	130, 242
AsuHPI	GGTGA	2 cut(s)	133, 324
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	157, 186, 326
BccI	CCATC	2 cut(s)	88, 331
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	134
BisI	GCNGC	5 cut(s)	16, 19, 146, 200, 315
BlsI	GCNGC	5 cut(s)	17, 20, 147, 201, 316
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	130, 242
BmrFI	CCNGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	265
BsaBI	GATNNNNATC	2 cut(s)	98, 251
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 268
Bse8I	GATNNNNATC	2 cut(s)	98, 251
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	2 cut(s)	98, 251
BseLI	CCNNNNNNNGG	2 cut(s)	139, 268
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	155, 284
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	157, 186, 326
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	139, 268
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	15, 18, 119, 185
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	227, 242
Bst6I	CTCTTC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	157, 186, 326
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	130, 242
CpoI	CGGWCCG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	223
CspI	CGGWCCG	1 cut(s)	242
CviAII	CATG	2 cut(s)	115, 336
CviJI	RGCY	6 cut(s)	51, 132, 154, 199, 212, 291
CviKI_1	RGCY	6 cut(s)	51, 132, 154, 199, 212, 291
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	118, 339
FaiI	YATR	2 cut(s)	116, 337
FatI	CATG	2 cut(s)	114, 335
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	16, 19, 146, 200, 315
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	5 cut(s)	16, 19, 146, 200, 315
GluI	GCNGC	5 cut(s)	16, 19, 146, 200, 315
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	118, 339
HinfI	GANTC	2 cut(s)	58, 160
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	133, 324
Hpy166II	GTNNAC	2 cut(s)	34, 172
Hpy188I	TCNGA	3 cut(s)	66, 81, 246
Hpy8I	GTNNAC	2 cut(s)	34, 172
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	79, 211
HpyCH4III	ACNGT	2 cut(s)	227, 242
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	34, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	118, 339
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	68, 119, 146, 177, 188, 269
Lsp1109I	GCAGC	3 cut(s)	157, 186, 326
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	94, 181
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	133, 144, 199, 262, 280, 287
MslI	CAYNNNNRTG	2 cut(s)	119, 334
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	118, 339
NmeAIII	GCCGAG	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	58, 160
PkrI	GCNGC	5 cut(s)	17, 20, 147, 201, 316
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	130, 242
PstNI	CAGNNNCTG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	2 cut(s)	119, 334
Rsr2I	CGGWCCG	1 cut(s)	242
RsrII	CGGWCCG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	16, 19, 146, 200, 315
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	130, 242
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	3 cut(s)	33, 201, 267
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	119, 334
SsiI	CCGC	4 cut(s)	15, 18, 119, 185
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	227, 242
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	2 cut(s)	18, 21
TfiI	GAWTC	2 cut(s)	58, 160
TseI	GCWGC	3 cut(s)	145, 199, 314
TspDTI	ATGAA	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.