pycom07g15310

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011864
Physical Location & Seq
Forward (+)
17589072 .. 17589443
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15310.1

Sequence Viewer

Length: 372 bp
ATGGGTAGCGGAGAGAGAAGTCTGAGAAATTTCCATCTTCACCTGCCGCATCTTCACCACCACCATCATCACGGTGGGAAGAAACAAGTGATTAGAGATGTTCCAAAAGGGTGTTTGGCAATCAAGGTGGGCCAGGGAGAAGAGCAACAGAGGTTTGTGGTGCCTGTGATTTACTTCAATCACCCACTCTTCATACGGCTCTTGAAGGAAGCGGAGGAAGAGTATGGGTTTGATCAGAAGGGCACCATCACCATCCCTTGCCATGTGGAGGAGTTCAGGTCCGTTCAAGGCATGATTGATAGGGAGAACTCCCTCCACCACCATCACCACCACCAGCACCACCACCTCCATGTCGGGTGCTTTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

14.44

Weight (kDa)

7.96

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 28 - 98 7.7e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 51
AccB1I GGYRCC 2 cut(s) 160, 242
AciI CCGC 3 cut(s) 9, 47, 212
AcsI RAATTY 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 3 cut(s) 178, 205, 287
AjnI CCWGG 1 cut(s) 132
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 130, 279
AsuHPI GGTGA 5 cut(s) 32, 47, 173, 241, 317
AvaII GGWCC 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 2 cut(s) 160, 242
BccI CCATC 5 cut(s) 42, 72, 254, 260, 330
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 134
BclI TGATCA 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 130, 279
BmiI GGNNCC 2 cut(s) 162, 244
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 245
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 2 cut(s) 160, 242
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 3 cut(s) 9, 47, 212
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 162, 244
BspMI ACCTGC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 2 cut(s) 160, 242
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 3 cut(s) 135, 194, 213
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 130, 279
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 3 cut(s) 263, 292, 350
CviJI RGCY 2 cut(s) 132, 199
CviKI_1 RGCY 2 cut(s) 132, 199
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 135, 194, 213
EarI CTCTTC 3 cut(s) 135, 194, 213
Eco47I GGWCC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 266, 295, 353
FaiI YATR 5 cut(s) 194, 225, 264, 293, 351
FatI CATG 3 cut(s) 262, 291, 349
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 132
Hin1II CATG 3 cut(s) 266, 295, 353
HphI GGTGA 5 cut(s) 32, 47, 173, 241, 317
Hpy188I TCNGA 2 cut(s) 24, 237
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 199, 232
HpyCH4III ACNGT 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 266, 295, 353
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 56, 119, 146, 177, 262, 347
LweI GCATC 1 cut(s) 58
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 6 cut(s) 29, 44, 91, 152, 181, 230
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 28
MnlI CCTC 5 cut(s) 144, 208, 262, 323, 356
MslI CAYNNNNRTG 2 cut(s) 72, 348
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
NdeII GATC 1 cut(s) 232
NlaIII CATG 3 cut(s) 266, 295, 353
NlaIV GGNNCC 2 cut(s) 162, 244
PaqCI CACCTGC 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 162, 244
PspPI GGNCC 2 cut(s) 130, 279
RseI CAYNNNNRTG 2 cut(s) 72, 348
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 130, 279
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 245
SetI ASST 5 cut(s) 45, 129, 155, 281, 348
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 72, 348
Sse9I AATT 1 cut(s) 28
SsiI CCGC 3 cut(s) 9, 47, 212
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 74
TasI AATT 1 cut(s) 28
TauI GCSGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.