AT4G01037

Protein ROOT PRIMORDIUM DEFECTIVE 1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
451194 .. 453243
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01037.1

Sequence Viewer

Length: 1587 bp
ATGGAGCCCAAGCTTCTGCTTTCTGCACATAAACCTTTGTTTGTCTCTTGTAACTCTCCATTCAATGAAAAAACCAAGCTTTCGGTCAAATCCGGTTTGCCCATGTCCACAATTCGAGCTGCGAGGTCTCAGTTTATGGGGGAAGGTTTGATTTTGGGGAACAAGTATGGGTTTTGGAGTACTTCTAGGAAAACTCGTGTTGTTGTTGAGCCTGTGAGAGCTGCTGTGAAGAGAAGGAAAGAGCTTACTTTCGATAGCGTTGTTCAAAGGGATAAGAAACTTAAGTTAGTGTTGAACATTAGGAAGATTCTTGTGAGTCAACCTGATAGGATGATGTCTCTTAGGGGTTTGGGTAAGTACAGGAGAGATTTGGGTTTGAAGAAACGTCGTCGGTTTATAGCTCTGCTTAGGAAATATCCTGGTGTGTTTGAGATAGTTGAAGAAGGAGCTTATTCTTTGAGATTTAAGATGACATCAGAGGCTGAAAGGTTGTACCTTGACGAAATGAGGATTAGGAATGAGCTTGAAGATGTACTGGTTGTTAAGCTGAGGAAACTGGTGATGATGTCTATTGATAAGCGGATATTGTTGGAGAAGATTTCCCATTTGAAGACTGATTTAGGGCTTCCGTTAGAGTTCCGCGACACGATTTGTCAGCGTTACCCGCAATATTTCCGTGTGGTTCCTACGCCTAGAGGTCCGGCTTTAGAGTTGACTCACTGGGATCCTGAGCTTGCAGTGTCAGCTGCTGAGTTATCTGAGGATGATAATAGGACTAGAGAGTCAGAAGAAAGGAATTTGATTATTGATAGACCACCTAAGTTCAACAGGGTTAAGCTTCCAAGGGGTCTCAATCTTTCAAAGAGTGAGACGAGGAAGATATCTCAGTTCCGTGACATGCAGTATATATCTCCTTACAAGGATTTCTCCCACTTGAGGTCGGGAACACTCGAGAAAGAAAAGCATGCTTGTGGGGTTATTCATGAGCTTTTGAGCTTAACGACTGAGAAAAGAACGCTGGTGGATCACTTGACTCATTTCCGTGAGGAATTCAGATTCTCACAACAACTGAGGGGAATGCTTATTAGGCACCCTGATCTCTTCTACGTGTCTTTGAAAGGTGAAAGAGACTCGGTGTTCTTAAGAGAAGCTTACAGGAACTCTGAATTGATAGATAAAGATCCTTTAACTCTTGTGAAAGAGAAGATGCGTGCACTTGTTTCTGTACCAAGGTTCCCAAGGAGAGGAGGACCCAGGAAAGACGAAGAAGGAAGAGAGGTAGAGATCGATGGAAGCGATGCAGATGGTGAGGAGGAAGAAGAAGAAAGTGATGCTGAAGAATGGTCTGATGTTGATGGTTACTTGGAAGGTGAAGATGGTGGCAATGATGATGATGGCGATTGGACAGATGACGAAGGAGAGGAAGATGTGCCTCCTAACTTTGATGATGATGATGAAGACGAAGAAGAAGATAGCGTGAAGATTGGATTAAGTCCTTCAAGTAGAAAATCAAGTAGTCCTAGAAAGAAAGAAGAGAAAGTACTTACTCCTGTGTTCCCTGATGGTACTCCAAGGGAAAAATGGTAA

Protein Analysis

528

Amino Acids

61.23

Weight (kDa)

6.27

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 80 - 408 1e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 1089
AccII CGCG 1 cut(s) 642
AciI CCGC 3 cut(s) 580, 640, 665
AclWI GGATC 4 cut(s) 719, 732, 1032, 1175
AcsI RAATTY 2 cut(s) 796, 1049
AcuI CTGAAG 1 cut(s) 1356
AfaI GTAC 7 cut(s) 181, 359, 494, 534, 1227, 1542, 1567
AfiI CCNNNNNNNGG 2 cut(s) 936, 1244
AflII CTTAAG 2 cut(s) 281, 1141
AflIII ACRYGT 1 cut(s) 1107
AjnI CCWGG 2 cut(s) 418, 1253
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 6 cut(s) 49, 132, 342, 854, 863, 1122
Alw44I GTGCAC 1 cut(s) 1212
AlwI GGATC 4 cut(s) 719, 732, 1032, 1175
AlwNI CAGNNNCTG 2 cut(s) 482, 749
Ama87I CYCGRG 1 cut(s) 950
ApaLI GTGCAC 1 cut(s) 1212
ApeKI GCWGC 3 cut(s) 119, 221, 746
ApoI RAATTY 2 cut(s) 796, 1049
AspS9I GGNCC 2 cut(s) 698, 1250
AsuHPI GGTGA 4 cut(s) 571, 1133, 1319, 1382
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 2 cut(s) 698, 1250
BaeGI GKGCMC 1 cut(s) 1216
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 1089
BanII GRGCYC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 1524, 1556
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 617, 1464
Bbv12I GWGCWC 1 cut(s) 1216
BbvCI CCTCAGC 1 cut(s) 548
BbvI GCAGC 3 cut(s) 106, 208, 733
BccI CCATC 6 cut(s) 1283, 1298, 1349, 1370, 1388, 1556
BciT130I CCWGG 2 cut(s) 420, 1255
BcoDI GTCTC 6 cut(s) 49, 132, 342, 854, 863, 1122
BfaI CTAG 4 cut(s) 186, 693, 777, 1521
BfrI CTTAAG 2 cut(s) 281, 1141
BisI GCNGC 3 cut(s) 120, 222, 747
BlsI GCNGC 3 cut(s) 121, 223, 748
BmcAI AGTACT 2 cut(s) 181, 1542
Bme1390I CCNGG 2 cut(s) 420, 1255
Bme18I GGWCC 2 cut(s) 698, 1250
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 698, 1250
BmiI GGNNCC 6 cut(s) 6, 684, 726, 1091, 1235, 1252
BmrFI CCNGG 2 cut(s) 420, 1255
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 3 cut(s) 1197, 1288, 1321
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 2 cut(s) 617, 1464
Bpu10I CCTNAGC 3 cut(s) 407, 548, 729
BpuEI CTTGAG 1 cut(s) 955
Bsa29I ATCGAT 1 cut(s) 1287
BsaAI YACGTR 1 cut(s) 1108
BsaBI GATNNNNATC 1 cut(s) 1179
BsaI GGTCTC 2 cut(s) 132, 854
BsaJI CCNNGG 5 cut(s) 842, 1229, 1238, 1253, 1571
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 936, 1244
Bse1I ACTGG 3 cut(s) 540, 561, 725
Bse3DI GCAATG 1 cut(s) 1390
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 2 cut(s) 420, 1255
BseCI ATCGAT 1 cut(s) 1287
BseDI CCNNGG 5 cut(s) 842, 1229, 1238, 1253, 1571
BseGI GGATG 2 cut(s) 336, 769
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 2 cut(s) 936, 1244
BseMI GCAATG 1 cut(s) 1390
BseMII CTCAG 8 cut(s) 143, 539, 720, 741, 750, 899, 996, 1061
BseNI ACTGG 3 cut(s) 540, 561, 725
BseRI GAGGAG 2 cut(s) 1260, 1325
BseSI GKGCMC 1 cut(s) 1216
BseXI GCAGC 3 cut(s) 106, 208, 733
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 642
BshNI GGYRCC 1 cut(s) 1089
BshVI ATCGAT 1 cut(s) 1287
BsiHKAI GWGCWC 1 cut(s) 1216
BsiHKCI CYCGRG 1 cut(s) 950
BsiSI CCGG 2 cut(s) 93, 701
BslI CCNNNNNNNGG 2 cut(s) 936, 1244
BsmAI GTCTC 6 cut(s) 49, 132, 342, 854, 863, 1122
BsmBI CGTCTC 1 cut(s) 863
BsmI GAATGC 1 cut(s) 1083
Bso31I GGTCTC 2 cut(s) 132, 854
BsoBI CYCGRG 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 9, 1216
Bsp143I GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
BspACI CCGC 3 cut(s) 580, 640, 665
BspCNI CTCAG 8 cut(s) 142, 540, 721, 742, 751, 898, 997, 1062
BspDI ATCGAT 1 cut(s) 1287
BspFNI CGCG 1 cut(s) 642
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 6 cut(s) 6, 684, 726, 1091, 1235, 1252
BspPI GGATC 4 cut(s) 719, 732, 1032, 1175
BspT107I GGYRCC 1 cut(s) 1089
BspTI CTTAAG 2 cut(s) 281, 1141
BspTNI GGTCTC 2 cut(s) 132, 854
BsrDI GCAATG 1 cut(s) 1390
BsrI ACTGG 3 cut(s) 540, 561, 725
BssECI CCNNGG 5 cut(s) 842, 1229, 1238, 1253, 1571
BssMI GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 4 cut(s) 842, 1229, 1238, 1571
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 420, 1255
Bst6I CTCTTC 4 cut(s) 224, 1106, 1267, 1527
BstAFI CTTAAG 2 cut(s) 281, 1141
BstBAI YACGTR 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 735, 966, 1212
BstF5I GGATG 2 cut(s) 336, 769
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 5 cut(s) 727, 1027, 1099, 1183, 1287
BstMAI GTCTC 6 cut(s) 49, 132, 342, 854, 863, 1122
BstMBI GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
BstMWI GCNNNNNNNGC 3 cut(s) 664, 743, 1087
BstNI CCWGG 2 cut(s) 420, 1255
BstNSI RCATGY 2 cut(s) 901, 968
BstSCI CCNGG 2 cut(s) 418, 1253
BstSLI GKGCMC 1 cut(s) 1216
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 3 cut(s) 106, 208, 733
BstV2I GAAGAC 2 cut(s) 617, 1464
BstX2I RGATCY 2 cut(s) 724, 1180
BstYI RGATCY 2 cut(s) 724, 1180
Bsu15I ATCGAT 1 cut(s) 1287
BsuTUI ATCGAT 1 cut(s) 1287
BtgZI GCGATG 1 cut(s) 1311
BtsCI GGATG 2 cut(s) 336, 769
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 2 cut(s) 718, 744
Cac8I GCNNGC 3 cut(s) 735, 966, 1212
CaiI CAGNNNCTG 2 cut(s) 482, 749
CciI TCATGA 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 698, 1250
ClaI ATCGAT 1 cut(s) 1287
Csp6I GTAC 7 cut(s) 180, 358, 493, 533, 1226, 1541, 1566
CviAII CATG 4 cut(s) 103, 898, 965, 983
CviQI GTAC 7 cut(s) 180, 358, 493, 533, 1226, 1541, 1566
DpnI GATC 5 cut(s) 726, 1026, 1098, 1182, 1286
DpnII GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
DrdI GACNNNNNNGTC 1 cut(s) 781
DseDI GACNNNNNNGTC 1 cut(s) 781
Eam1104I CTCTTC 4 cut(s) 224, 1106, 1267, 1527
EarI CTCTTC 4 cut(s) 224, 1106, 1267, 1527
Eco130I CCWWGG 4 cut(s) 842, 1229, 1238, 1571
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 132, 854
Eco32I GATATC 1 cut(s) 882
Eco47I GGWCC 2 cut(s) 698, 1250
Eco57I CTGAAG 1 cut(s) 1356
Eco88I CYCGRG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 1250
EcoRI GAATTC 1 cut(s) 1049
EcoRII CCWGG 2 cut(s) 418, 1253
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 4 cut(s) 842, 1229, 1238, 1571
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 4 cut(s) 842, 1229, 1238, 1571
Esp3I CGTCTC 1 cut(s) 863
FaeI CATG 4 cut(s) 106, 901, 968, 986
FalI AAGNNNNNCTT 2 cut(s) 1135, 1167
FatI CATG 4 cut(s) 102, 897, 964, 982
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 3 cut(s) 120, 222, 747
FokI GGATG 2 cut(s) 343, 776
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 120, 222, 747
FspBI CTAG 4 cut(s) 186, 693, 777, 1521
GluI GCNGC 3 cut(s) 120, 222, 747
HapII CCGG 2 cut(s) 93, 701
Hin1II CATG 4 cut(s) 106, 901, 968, 986
HincII GTYRAC 2 cut(s) 320, 714
HindII GTYRAC 2 cut(s) 320, 714
HindIII AAGCTT 4 cut(s) 11, 77, 836, 1149
HinfI GANTC 7 cut(s) 307, 316, 715, 782, 1033, 1056, 1130
HpaII CCGG 2 cut(s) 93, 701
HphI GGTGA 4 cut(s) 571, 1133, 1319, 1382
Hpy166II GTNNAC 4 cut(s) 108, 320, 714, 1214
Hpy188I TCNGA 6 cut(s) 478, 760, 787, 1055, 1165, 1348
Hpy188III TCNNGA 4 cut(s) 728, 942, 952, 983
Hpy8I GTNNAC 4 cut(s) 108, 320, 714, 1214
Hpy99I CGWCG 2 cut(s) 390, 393
HpyAV CCTTC 7 cut(s) 137, 228, 437, 1262, 1361, 1409, 1506
HpyCH4IV ACGT 2 cut(s) 385, 1107
HpyCH4V TGCA 5 cut(s) 26, 737, 901, 1214, 1301
HpyF10VI GCNNNNNNNGC 3 cut(s) 664, 743, 1087
HpySE526I ACGT 2 cut(s) 385, 1107
Hsp92II CATG 4 cut(s) 106, 901, 968, 986
Kzo9I GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
LmnI GCTCC 2 cut(s) 4, 446
Lsp1109I GCAGC 3 cut(s) 106, 208, 733
LweI GCATC 3 cut(s) 1197, 1288, 1321
MaeI CTAG 4 cut(s) 186, 693, 777, 1521
MaeII ACGT 2 cut(s) 385, 1107
MaeIII GTNAC 4 cut(s) 50, 659, 893, 1358
MalI GATC 5 cut(s) 726, 1026, 1098, 1182, 1286
MboI GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
MflI RGATCY 2 cut(s) 724, 1180
MhlI GDGCHC 2 cut(s) 9, 1216
MluCI AATT 4 cut(s) 111, 796, 1049, 1166
MlyI GAGTC 5 cut(s) 325, 709, 791, 1027, 1124
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 8 cut(s) 282, 465, 543, 834, 998, 1142, 1187, 1490
MslI CAYNNNNRTG 2 cut(s) 969, 1041
MspA1I CMGCKG 1 cut(s) 746
MspCI CTTAAG 2 cut(s) 281, 1141
MspI CCGG 2 cut(s) 93, 701
MspR9I CCNGG 2 cut(s) 420, 1255
Mva1269I GAATGC 1 cut(s) 1083
MvaI CCWGG 2 cut(s) 420, 1255
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 3 cut(s) 664, 743, 1087
NdeII GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
NlaIII CATG 4 cut(s) 106, 901, 968, 986
NlaIV GGNNCC 6 cut(s) 6, 684, 726, 1091, 1235, 1252
NmuCI GTSAC 1 cut(s) 893
NspI RCATGY 2 cut(s) 901, 968
PaeI GCATGC 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 950
PagI TCATGA 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 1293
PctI GAATGC 1 cut(s) 1083
PfeI GAWTC 2 cut(s) 307, 1056
PkrI GCNGC 3 cut(s) 121, 223, 748
PleI GAGTC 5 cut(s) 324, 709, 790, 1027, 1124
PpsI GAGTC 5 cut(s) 324, 709, 790, 1027, 1124
Ppu21I YACGTR 1 cut(s) 1108
PpuMI RGGWCCY 1 cut(s) 1250
Psp5II RGGWCCY 1 cut(s) 1250
Psp6I CCWGG 2 cut(s) 418, 1253
PspGI CCWGG 2 cut(s) 418, 1253
PspN4I GGNNCC 6 cut(s) 6, 684, 726, 1091, 1235, 1252
PspPI GGNCC 2 cut(s) 698, 1250
PspPPI RGGWCCY 1 cut(s) 1250
PstNI CAGNNNCTG 2 cut(s) 482, 749
PsuI RGATCY 2 cut(s) 724, 1180
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 7 cut(s) 181, 359, 494, 534, 1227, 1542, 1567
RsaNI GTAC 7 cut(s) 180, 358, 493, 533, 1226, 1541, 1566
RseI CAYNNNNRTG 2 cut(s) 969, 1041
SaqAI TTAA 8 cut(s) 282, 465, 543, 834, 998, 1142, 1187, 1490
SatI GCNGC 3 cut(s) 120, 222, 747
Sau3AI GATC 5 cut(s) 724, 1024, 1096, 1180, 1284
Sau96I GGNCC 2 cut(s) 698, 1250
ScaI AGTACT 2 cut(s) 181, 1542
SchI GAGTC 5 cut(s) 325, 709, 791, 1027, 1124
ScrFI CCNGG 2 cut(s) 420, 1255
SduI GDGCHC 2 cut(s) 9, 1216
SfaNI GCATC 3 cut(s) 1197, 1288, 1321
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 2 cut(s) 698, 1250
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 969, 1041
SmlI CTYRAG 4 cut(s) 281, 934, 950, 1141
SmoI CTYRAG 4 cut(s) 281, 934, 950, 1141
SphI GCATGC 1 cut(s) 968
Sse9I AATT 4 cut(s) 111, 796, 1049, 1166
SsiI CCGC 3 cut(s) 580, 640, 665
SspI AATATT 1 cut(s) 671
SspMI CTAG 4 cut(s) 186, 693, 777, 1521
StyD4I CCNGG 2 cut(s) 418, 1253
StyI CCWWGG 4 cut(s) 842, 1229, 1238, 1571
TaiI ACGT 2 cut(s) 388, 1110
TaqI TCGA 4 cut(s) 115, 252, 951, 1287
TaqII GACCGA 1 cut(s) 73
TasI AATT 4 cut(s) 111, 796, 1049, 1166
TatI WGTACW 4 cut(s) 179, 357, 532, 1540
TfiI GAWTC 2 cut(s) 307, 1056
Tru1I TTAA 8 cut(s) 282, 465, 543, 834, 998, 1142, 1187, 1490
Tru9I TTAA 8 cut(s) 282, 465, 543, 834, 998, 1142, 1187, 1490
TscAI CASTG 2 cut(s) 725, 744
TseFI GTSAC 1 cut(s) 893
TseI GCWGC 3 cut(s) 119, 221, 746
Tsp45I GTSAC 1 cut(s) 893
TspDTI ATGAA 3 cut(s) 81, 971, 1470
TspGWI ACGGA 4 cut(s) 618, 665, 881, 1031
TspRI CASTG 2 cut(s) 725, 744
Vha464I CTTAAG 2 cut(s) 281, 1141
VneI GTGCAC 1 cut(s) 1212
VpaK11BI GGWCC 2 cut(s) 698, 1250
XapI RAATTY 2 cut(s) 796, 1049
XceI RCATGY 2 cut(s) 901, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 1578
XhoI CTCGAG 1 cut(s) 950
XspI CTAG 4 cut(s) 186, 693, 777, 1521
ZrmI AGTACT 2 cut(s) 181, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.