Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Reverse (-)

44073331 .. 44075470

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGATGCAGCTCTCAATGGAACCAAAGCTGTTGCTTTCTTCAACCACAGCATTACCAGCCACTTCCTTACCCTTTTTCCTTTCATACAAGTCTCCTTTTCATTTAAGATCCAAACAGTCTGTGAAAACCCATCTCTCAATCTCAAGGATACAGCCGGAAAAATCAAACTTTTGGGGAAATAGTTTGGTTTTACCTGAGAGAGATGTTATTTTGGGTGATTTGAGACATGTCCCAGTTGGACTGATACATGCTGCTGTGAAGAGGAGGAAAGAACTTCCTTTCGACAATGTGATCCAAAGGGATAAGAAGTTGAAGTTAGTTTTGAAGATTAGAAAAATTTTAGTGAGCCAACCTGATAGAATTATGTCACTTAGGGAATTAGGTAGGTATAGAAGAGAACTGGGTCTGCAGAAAAAGAGGCGGTTTATTGCATTACTGAAAAAGTTCCCTGCTGTGTTTGAGATTGTTGAAGAAGGTGTATTTTCGTTGAAATTTAAATTAACGCCCGAAGCAGAAAGGCTTTATCTTGAAGAGTTGCAGGTTCGAAATGAGATGGAAGACTTGCTGGTCGTGAAGTTGAGGAAATTATTGATGATGTCATTGGATAAACGGATTTTGTTGGAGAAGATTGCTCATTTGAGGACCGATTTAGCGCTTCCTTTAGAATTTCGTGATACAATTTGTCATCGATACCCACAGTATTTTAAAGTTGTTGCAACTGCGAGAGGTCCAGCATTAGAATTAACTCATTGGGATCCTGAGCTTGCTGTATCAGCTGCTGAGTTATCTGAAGAGGAAAATCGTGCTAGGGAATTAGAAGAGAAGGATTTGATTATAGATCGGCCTCTCAAGTTCAACAGACTAAAGTTACCAAGGGGTCTTAATCTTTCTAAGGGTGAGATGAGGAGAATATGTCTGTTTAGAGACATCCCTTATATATCCCCTTACTCTGATTTCTCGGGGCTGAGGTCAGGTACAATTGAGAAAGAGAAACATGCTTGTGCAGTTGTCCATGAGATATTGAGCCTTACTGTGGAGAAGAAAACTCTTGTAGATCACCTTACTCATTTCCGCGAGGAGTTTAGGTTCTCTCAACAGGTCAGGGGAATGCTGATAAGGCACCCTGATATGTTTTATGTCTCGTTGAAAGGAGATAGGGATTCAGTTTTCCTTAGAGAAGCATATCGTGACTCTCAATTGATAGACAAGGATCGTCTGCTGATTATAAAAGAGAAGCTTCGATCTATTATTGCAGTTCCACGGTATCCTAGAAGGGGTGCTCCCAATAGAGAGGCAGACGGTGCTGAAGGAGCCAATGAGGCACAAGATGGAACTGTTGATGAGGGAGAGGAATGGTCTGATACTGATAACTTTATGAGTGATGAAGATGATGATGATGATGATGATGATGTAGATGATTGGAGTGATGAAGATGAAGATACGCCCCCAGATTTCAACGAAGATGGGAAAACATTAAACAATGAACTGAGCAAACCAATTAATCAAGAAGGCTATTTAACAGAGAATGATGAGAGGGTGCTTGTTCCAGTCTTGCCAGATGGTCGGCCAAGAGAGCGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

527

Amino Acids

61.32

Weight (kDa)

5.97

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	90 - 417	1.1e-106	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1226
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	1119
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	2 cut(s)	421, 1072
AclWI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
AcoI	YGGCCR	1 cut(s)	1565
AcsI	RAATTY	3 cut(s)	336, 491, 665
AcuI	CTGAAG	2 cut(s)	810, 1326
AfaI	GTAC	1 cut(s)	976
AfeI	AGCGCT	2 cut(s)	654, 1577
AfiI	CCNNNNNNNGG	2 cut(s)	1033, 1274
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	9 cut(s)	42, 313, 325, 470, 490, 530, 856, 1147, 1456
AloI	GAACNNNNNNTCC	2 cut(s)	1070, 1102
AluBI	AGCT	5 cut(s)	10, 28, 763, 776, 1237
AluI	AGCT	5 cut(s)	10, 28, 763, 776, 1237
Alw21I	GWGCWC	1 cut(s)	1282
Alw26I	GTCTC	4 cut(s)	96, 217, 918, 1144
AlwI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	958
Aor51HI	AGCGCT	2 cut(s)	654, 1577
AoxI	GGCC	2 cut(s)	842, 1565
ApeKI	GCWGC	3 cut(s)	7, 251, 776
ApoI	RAATTY	3 cut(s)	336, 491, 665
AseI	ATTAAT	1 cut(s)	1500
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	655, 1578
AspS9I	GGNCC	2 cut(s)	642, 728
AsuHPI	GGTGA	3 cut(s)	227, 908, 1049
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	2 cut(s)	642, 728
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	1119
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	1282
BbvCI	CCTCAGC	1 cut(s)	965
BbvI	GCAGC	3 cut(s)	19, 238, 763
BccI	CCATC	5 cut(s)	138, 547, 1322, 1457, 1553
BciVI	GTATCC	2 cut(s)	141, 1275
BcoDI	GTCTC	4 cut(s)	96, 217, 918, 1144
BfaI	CTAG	2 cut(s)	807, 1269
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	2 cut(s)	656, 1579
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	2 cut(s)	141, 1275
BglI	GCCNNNNNGGC	1 cut(s)	1319
BisI	GCNGC	3 cut(s)	8, 252, 777
BlsI	GCNGC	3 cut(s)	9, 253, 778
Bme18I	GGWCC	2 cut(s)	642, 728
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	642, 728
BmiI	GGNNCC	4 cut(s)	21, 756, 1121, 1312
BmrI	ACTGGG	2 cut(s)	227, 410
BmuI	ACTGGG	2 cut(s)	227, 410
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	2 cut(s)	759, 965
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	127, 833
Bsa29I	ATCGAT	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	872, 1259
BsaXI	ACNNNNNCTCC	4 cut(s)	898, 928, 1070, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	1033, 1274
Bse1I	ACTGG	3 cut(s)	233, 405, 1547
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	872, 1259
BseGI	GGATG	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	1033, 1274
BseMII	CTCAG	5 cut(s)	186, 750, 771, 956, 1478
BseNI	ACTGG	3 cut(s)	233, 405, 1547
BseRI	GAGGAG	3 cut(s)	277, 919, 1091
BseXI	GCAGC	3 cut(s)	19, 238, 763
BsgI	GTGCAG	1 cut(s)	1023
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	2 cut(s)	844, 1567
BshNI	GGYRCC	1 cut(s)	1119
BshVI	ATCGAT	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	1282
BsiHKCI	CYCGRG	1 cut(s)	958
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	1033, 1274
BsmAI	GTCTC	4 cut(s)	96, 217, 918, 1144
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	2 cut(s)	844, 1567
BsoBI	CYCGRG	1 cut(s)	958
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	1282
Bsp143I	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
BspACI	CCGC	2 cut(s)	421, 1072
BspANI	GGCC	2 cut(s)	844, 1567
BspCNI	CTCAG	5 cut(s)	187, 751, 772, 957, 1479
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	4 cut(s)	21, 756, 1121, 1312
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	5 cut(s)	102, 286, 749, 762, 1218
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	1119
BsrI	ACTGG	3 cut(s)	233, 405, 1547
BssECI	CCNNGG	2 cut(s)	872, 1259
BssMI	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
BssT1I	CCWWGG	1 cut(s)	872
Bst4CI	ACNGT	6 cut(s)	117, 699, 1033, 1263, 1301, 1336
Bst6I	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
BstAPI	GCANNNNNTGC	1 cut(s)	1301
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	8 cut(s)	195, 371, 759, 780, 891, 965, 1172, 1487
BstDSI	CCRYGG	1 cut(s)	1259
BstF5I	GGATG	1 cut(s)	927
BstFNI	CGCG	1 cut(s)	1074
BstH2I	RGCGCY	2 cut(s)	656, 1579
BstHHI	GCGC	2 cut(s)	655, 1578
BstKTI	GATC	7 cut(s)	110, 294, 757, 841, 1057, 1213, 1244
BstMAI	GTCTC	4 cut(s)	96, 217, 918, 1144
BstMBI	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 773, 1117, 1301, 1310, 1319, 1573
BstNSI	RCATGY	3 cut(s)	230, 251, 998
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	3 cut(s)	19, 238, 763
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	107, 754
BstYI	RGATCY	2 cut(s)	107, 754
Bsu15I	ATCGAT	1 cut(s)	688
BsuI	GTATCC	2 cut(s)	141, 1275
BsuRI	GGCC	2 cut(s)	844, 1567
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	1259
BtsCI	GGATG	1 cut(s)	927
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	765
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	2 cut(s)	655, 1578
Cfr13I	GGNCC	2 cut(s)	642, 728
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	975
CviAII	CATG	4 cut(s)	227, 248, 995, 1013
CviQI	GTAC	1 cut(s)	975
DdeI	CTNAG	8 cut(s)	195, 371, 759, 780, 891, 965, 1172, 1487
DpnI	GATC	7 cut(s)	109, 293, 756, 840, 1056, 1212, 1243
DpnII	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
DraI	TTTAAA	2 cut(s)	496, 706
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	1565
Eam1104I	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
EarI	CTCTTC	5 cut(s)	254, 388, 525, 786, 813
Eco130I	CCWWGG	1 cut(s)	872
Eco47I	GGWCC	2 cut(s)	642, 728
Eco47III	AGCGCT	2 cut(s)	654, 1577
Eco57I	CTGAAG	2 cut(s)	810, 1326
Eco88I	CYCGRG	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	4 cut(s)	230, 251, 998, 1016
FalI	AAGNNNNNCTT	2 cut(s)	1221, 1253
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	226, 247, 994, 1012
Fnu4HI	GCNGC	3 cut(s)	8, 252, 777
FokI	GGATG	1 cut(s)	914
Fsp4HI	GCNGC	3 cut(s)	8, 252, 777
FspBI	CTAG	2 cut(s)	807, 1269
GlaI	GCGC	2 cut(s)	654, 1577
GluI	GCNGC	3 cut(s)	8, 252, 777
HaeII	RGCGCY	2 cut(s)	656, 1579
HaeIII	GGCC	2 cut(s)	844, 1567
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	2 cut(s)	655, 1578
Hin1II	CATG	4 cut(s)	230, 251, 998, 1016
Hin6I	GCGC	2 cut(s)	653, 1576
HinP1I	GCGC	2 cut(s)	653, 1576
HindIII	AAGCTT	1 cut(s)	1235
HinfI	GANTC	2 cut(s)	1160, 1190
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	3 cut(s)	227, 908, 1049
Hpy188I	TCNGA	3 cut(s)	790, 952, 1360
Hpy188III	TCNNGA	6 cut(s)	527, 571, 671, 758, 1187, 1505
HpyAV	CCTTC	5 cut(s)	467, 817, 1266, 1301, 1502
HpyCH4III	ACNGT	6 cut(s)	117, 699, 1033, 1263, 1301, 1336
HpyCH4V	TGCA	7 cut(s)	7, 409, 431, 538, 716, 1004, 1253
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 773, 1117, 1301, 1310, 1319, 1573
HpyF3I	CTNAG	8 cut(s)	195, 371, 759, 780, 891, 965, 1172, 1487
Hsp92II	CATG	4 cut(s)	230, 251, 998, 1016
HspAI	GCGC	2 cut(s)	653, 1576
Kzo9I	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
LmnI	GCTCC	2 cut(s)	1285, 1310
Lsp1109I	GCAGC	3 cut(s)	19, 238, 763
MaeI	CTAG	2 cut(s)	807, 1269
MaeIII	GTNAC	3 cut(s)	366, 867, 1187
MalI	GATC	7 cut(s)	109, 293, 756, 840, 1056, 1212, 1243
MboI	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
MfeI	CAATTG	2 cut(s)	978, 1196
MflI	RGATCY	2 cut(s)	107, 754
MhlI	GDGCHC	1 cut(s)	1282
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	217, 600
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	9 cut(s)	104, 495, 500, 705, 743, 882, 1475, 1500, 1517
MslI	CAYNNNNRTG	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	2 cut(s)	978, 1196
Mva1269I	GAATGC	1 cut(s)	1113
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	7 cut(s)	56, 773, 1117, 1301, 1310, 1319, 1573
NdeII	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
NlaIII	CATG	4 cut(s)	230, 251, 998, 1016
NlaIV	GGNNCC	4 cut(s)	21, 756, 1121, 1312
NmuCI	GTSAC	2 cut(s)	366, 1187
NspI	RCATGY	3 cut(s)	230, 251, 998
NspV	TTCGAA	1 cut(s)	544
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	1113
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	1160
PkrI	GCNGC	3 cut(s)	9, 253, 778
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
PscI	ACATGT	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	1500
PsiI	TTATAA	1 cut(s)	1226
PspN4I	GGNNCC	4 cut(s)	21, 756, 1121, 1312
PspPI	GGNCC	2 cut(s)	642, 728
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	107, 754
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	976
RsaNI	GTAC	1 cut(s)	975
RseI	CAYNNNNRTG	1 cut(s)	999
SaqAI	TTAA	9 cut(s)	104, 495, 500, 705, 743, 882, 1475, 1500, 1517
SatI	GCNGC	3 cut(s)	8, 252, 777
Sau3AI	GATC	7 cut(s)	107, 291, 754, 838, 1054, 1210, 1241
Sau96I	GGNCC	2 cut(s)	642, 728
SchI	GAGTC	1 cut(s)	1184
SduI	GDGCHC	1 cut(s)	1282
SfcI	CTRYAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	2 cut(s)	642, 728
SmiI	ATTTAAAT	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	2 cut(s)	142, 848
SmoI	CTYRAG	2 cut(s)	142, 848
SsiI	CCGC	2 cut(s)	421, 1072
SspMI	CTAG	2 cut(s)	807, 1269
StyI	CCWWGG	1 cut(s)	872
SwaI	ATTTAAAT	1 cut(s)	496
TaaI	ACNGT	6 cut(s)	117, 699, 1033, 1263, 1301, 1336
TaqI	TCGA	4 cut(s)	282, 544, 688, 1240
TaqII	GACCGA	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	1160
Tru1I	TTAA	9 cut(s)	104, 495, 500, 705, 743, 882, 1475, 1500, 1517
Tru9I	TTAA	9 cut(s)	104, 495, 500, 705, 743, 882, 1475, 1500, 1517
TseFI	GTSAC	2 cut(s)	366, 1187
TseI	GCWGC	3 cut(s)	7, 251, 776
Tsp45I	GTSAC	2 cut(s)	366, 1187
TspDTI	ATGAA	6 cut(s)	72, 89, 1398, 1443, 1449, 1497
TspGWI	ACGGA	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	642, 728
VspI	ATTAAT	1 cut(s)	1500
XapI	RAATTY	3 cut(s)	336, 491, 665
XceI	RCATGY	3 cut(s)	230, 251, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1575
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	807, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.