Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8035118.1

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 372

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8035118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

atgaggagaatatgtctgtttagagacatcccttatatatccccttactctgatttctcggggctgaggtcaggtacaattgagaaagagaaacatgcttgtgcagttgtccatgagatattgagccttactgtggagaagaaaactcttgtagatcaccttactcatttccgcgaggagtttaggttctctcaacaggtcaggggaatgctgataaggcaccctgatatgttttatgtctcgttgaaaggagatagggattcagttttccttagagaagcatatcgtgactctcaattgatagacaaggatcgtctgctgattataaaagagaagcttcgatctattattgcagttccacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

121

Amino Acids

14.34

Weight (kDa)

9.42

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	18, 244
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	18, 244
BmeT110I	CYCGRG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	65
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	19, 191
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	18, 244
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	154, 310, 341
BspACI	CCGC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	219
BssMI	GATC	3 cut(s)	154, 310, 341
Bst4CI	ACNGT	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	65, 272
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	3 cut(s)	157, 313, 344
BstMAI	GTCTC	2 cut(s)	18, 244
BstMBI	GATC	3 cut(s)	154, 310, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	98
BstUI	CGCG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	2 cut(s)	95, 113
CviJI	RGCY	3 cut(s)	64, 126, 337
CviKI_1	RGCY	3 cut(s)	64, 126, 337
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	65, 272
DpnI	GATC	3 cut(s)	156, 312, 343
DpnII	GATC	3 cut(s)	154, 310, 341
Eco88I	CYCGRG	1 cut(s)	58
FaeI	CATG	2 cut(s)	98, 116
FaiI	YATR	9 cut(s)	13, 36, 38, 96, 114, 230, 237, 283, 326
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	94, 112
FokI	GGATG	1 cut(s)	14
Hin1II	CATG	2 cut(s)	98, 116
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	260, 290
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	104, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	65, 272
Hsp92II	CATG	2 cut(s)	98, 116
Kzo9I	GATC	3 cut(s)	154, 310, 341
LpnPI	CCDG	4 cut(s)	57, 182, 187, 237
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	156, 312, 343
MboI	GATC	3 cut(s)	154, 310, 341
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	2 cut(s)	78, 296
MluCI	AATT	2 cut(s)	78, 296
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	60, 169
MslI	CAYNNNNRTG	1 cut(s)	99
MunI	CAATTG	2 cut(s)	78, 296
Mva1269I	GAATGC	1 cut(s)	213
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	154, 310, 341
NlaIII	CATG	2 cut(s)	98, 116
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	98
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	154, 310, 341
SchI	GAGTC	1 cut(s)	284
SetI	ASST	6 cut(s)	71, 76, 162, 188, 201, 339
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	78, 296
SsiI	CCGC	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	78, 296
TfiI	GAWTC	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.