Prupe.3G002000_v2.0.a1

Protein ROOT PRIMORDIUM DEFECTIVE

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
145227 .. 147777
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G002000.1

Sequence Viewer

Length: 1578 bp
ATGGAACCGAAGCTCTTGTTTTCTTCAACCAAAGCCTCACCGTCCCCTTCTTTACCCTTTTTTCTCTCATACAAATCTCCTTTTCTTCTACAACCCAAACAATCTACGAAAACCCATTTGTCAGTCTCAAAGATACTGCCAGAAAAATCGCTATTCTGGGGACAGAGTTTGGTTTTACATGGGAGAGATGTTCCTTTGGGAAACCTGACAAAAAACCATGTCCCGTTTGGGCCAATAAGTGCTGCTGTGAAGAGAAGGAAAGAGCTTCCCTTTGACAACGTAATTCAAAAGGATAAAAAGTTGAAGCTGGTTTTGAAGATACGAAAAATTTTAGTGAGCCAACCTGATAGAGTTATGTCGCTTAGAGAGTTAGGTAGGTACAGAAGAGACTTGGGTCTGCAGAAAAAGCGTCGTTTTATTGCCTTGTTAAAGAAGTTCCCTGCAGTGTTTGAGATTGTTGAAGAAGGGGTTTACTCTTTGCAATTCAAATTGACGCCGGAAGCAGAAAGGCTTTATTTTGAGGAGTTGAAGGTCAGGAATGAGATGGAAGACTTGCTAGTCGTGAAGTTGAGGAAATTGTTGATGATGTCATTGGATAAGCGGATTTTATTGGAGAAGATTGCCCATTTGAGGAATGATTTGGGGCTTCCTTTAGAGTTTCGTGATACAATTTGTCACCGGTACCCTCAGTTCTTTAAAGTTGTTGCAACTGCAAGAGGTCCGGCTTTAGAATTAACTCATTGGGATCCTGAGCTTGCAGTTTCAGCAGCTGAGTTATCCGAAGAGGAAAACCGGGTTAGAGAAATAGAAGAGAAAGATTTAATTATAGATAGGCCTCTCAAGTTCAATAGACTAAAACTGCCAAAGGGTCTTAATCTTTCCAAGGGTGAGATGAGAAGGATATGCCTGTTCAGGGACATACCTTACATATCCCCTTACTCTGATTTCTCGGGCCTGAGGTCAGGTACAATTGAGAAAGAGAAACATGCTTGTGCAGTTGTTCATGAGATGTTGAGTCTTACTGTGGAGAAGAGGACTCTTGTGGATCACCTTACTCATTTTCGAGAAGAGTTTAGATTCTCTCAGCAGGTGAGGGGTATGCTGATAAGGCACCCTGATATGTTTTACGTGTCCTTGAAAGGAGACAGGGATTCAGTTTTCCTTAGGGAAGCATATCGTGATTCCCAATTGATAGACAAGGATCGTTTGTTGATCATAAAGGAGAAGCTTCGATCTATTATATCTGTTCCTCGGTTTCCTCGAAGGGGTGCTCCCAGAAGTGAGGCAGATGGTGCAGAAGGAAATGATGAGGCAAAAGGTGGAACTCTTGAGGAGGGTGAGGAATGGTCTGATGCTGAGAACTTTATGAGTGATGATGAGTTTGACAATGACGAAGATGATGATGAAGATGATTGGAGTGATGAAGATGATGATACACCCCCAGATTTCGACGAAGATGGGAAAACACTGAATATTGGAGTGAGCAAACCAGTCAAAGATGAAGATAATTCGAGACAGAATGATGGAAAGGTACTTGTTCCAGTGTTGCCAGATGGTCGGCCAAGAGAGCGCTGGTAA

Protein Analysis

526

Amino Acids

60.82

Weight (kDa)

6.48

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1078
AasI GACNNNNNNGTC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 1078
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 2 cut(s) 681, 1110
AciI CCGC 1 cut(s) 601
AclWI GGATC 4 cut(s) 740, 753, 1053, 1209
AcoI YGGCCR 1 cut(s) 1559
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 4 cut(s) 380, 683, 967, 1533
AfeI AGCGCT 1 cut(s) 1571
AfiI CCNNNNNNNGG 3 cut(s) 630, 913, 1265
AflIII ACRYGT 1 cut(s) 1128
AgeI ACCGGT 1 cut(s) 678
AgsI TTSAA 9 cut(s) 27, 287, 304, 316, 461, 487, 529, 847, 1138
AluBI AGCT 6 cut(s) 13, 265, 307, 754, 770, 1228
AluI AGCT 6 cut(s) 13, 265, 307, 754, 770, 1228
Alw21I GWGCWC 1 cut(s) 1273
Alw26I GTCTC 4 cut(s) 130, 381, 1137, 1507
AlwI GGATC 4 cut(s) 740, 753, 1053, 1209
AlwNI CAGNNNCTG 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 949
Aor51HI AGCGCT 1 cut(s) 1571
AoxI GGCC 4 cut(s) 230, 833, 952, 1559
ApeKI GCWGC 2 cut(s) 242, 767
ApoI RAATTY 1 cut(s) 327
AsiGI ACCGGT 1 cut(s) 678
Asp718I GGTACC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 1572
AspS9I GGNCC 3 cut(s) 230, 719, 952
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 6 cut(s) 30, 668, 899, 1040, 1102, 1349
AvaI CYCGRG 1 cut(s) 949
AvaII GGWCC 1 cut(s) 719
AxyI CCTNAGG 2 cut(s) 956, 1163
BamHI GGATCC 1 cut(s) 745
BanI GGYRCC 2 cut(s) 681, 1110
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 1273
BbvI GCAGC 2 cut(s) 229, 779
BccI CCATC 5 cut(s) 538, 1283, 1451, 1517, 1547
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 4 cut(s) 130, 381, 1137, 1507
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 2 cut(s) 398, 441
BfoI RGCGCY 1 cut(s) 1573
BfuAI ACCTGC 1 cut(s) 1078
BisI GCNGC 2 cut(s) 243, 768
BlsI GCNGC 2 cut(s) 244, 769
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 1 cut(s) 719
BmeT110I CYCGRG 1 cut(s) 949
BmgT120I GGNCC 3 cut(s) 230, 719, 952
BmiI GGNNCC 4 cut(s) 6, 683, 747, 1112
BmrFI CCNGG 1 cut(s) 794
BmsI GCATC 1 cut(s) 1342
BoxI GACNNNNGTC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 2 cut(s) 824, 1349
BpuMI CCSGG 1 cut(s) 794
BsaAI YACGTR 1 cut(s) 1129
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 882, 1250
BsaWI WCCGGW 1 cut(s) 678
Bsc4I CCNNNNNNNGG 3 cut(s) 630, 913, 1265
Bse118I RCCGGY 1 cut(s) 678
Bse1I ACTGG 2 cut(s) 1490, 1541
Bse21I CCTNAGG 2 cut(s) 956, 1163
BseDI CCNNGG 2 cut(s) 882, 1250
BseLI CCNNNNNNNGG 3 cut(s) 630, 913, 1265
BseMII CTCAG 6 cut(s) 701, 741, 762, 947, 1097, 1347
BseNI ACTGG 2 cut(s) 1490, 1541
BseRI GAGGAG 2 cut(s) 536, 1346
BseXI GCAGC 2 cut(s) 229, 779
BsgI GTGCAG 2 cut(s) 1014, 1314
BshFI GGCC 4 cut(s) 232, 835, 954, 1561
BshNI GGYRCC 2 cut(s) 681, 1110
BshTI ACCGGT 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 1273
BsiHKCI CYCGRG 1 cut(s) 949
BsiSI CCGG 4 cut(s) 497, 679, 722, 793
BslFI GGGAC 4 cut(s) 28, 174, 206, 929
BslI CCNNNNNNNGG 3 cut(s) 630, 913, 1265
BsmAI GTCTC 4 cut(s) 130, 381, 1137, 1507
BsmFI GGGAC 4 cut(s) 28, 174, 206, 929
BsnI GGCC 4 cut(s) 232, 835, 954, 1561
BsoBI CYCGRG 1 cut(s) 949
Bsp1286I GDGCHC 1 cut(s) 1273
Bsp143I GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
BspACI CCGC 1 cut(s) 601
BspANI GGCC 4 cut(s) 232, 835, 954, 1561
BspCNI CTCAG 6 cut(s) 700, 742, 763, 948, 1096, 1348
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 4 cut(s) 6, 683, 747, 1112
BspMAI CTGCAG 2 cut(s) 402, 445
BspMI ACCTGC 1 cut(s) 1078
BspPI GGATC 4 cut(s) 740, 753, 1053, 1209
BspT107I GGYRCC 2 cut(s) 681, 1110
BsrFI RCCGGY 1 cut(s) 678
BsrI ACTGG 2 cut(s) 1490, 1541
BssAI RCCGGY 1 cut(s) 678
BssECI CCNNGG 2 cut(s) 882, 1250
BssMI GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 882
Bst4CI ACNGT 2 cut(s) 42, 1024
Bst6I CTCTTC 6 cut(s) 245, 379, 777, 804, 1025, 1062
BstACI GRCGYC 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 1129
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 8 cut(s) 362, 687, 750, 771, 956, 1083, 1163, 1356
BstH2I RGCGCY 1 cut(s) 1573
BstHHI GCGC 1 cut(s) 1572
BstKTI GATC 5 cut(s) 748, 1048, 1204, 1215, 1235
BstMAI GTCTC 4 cut(s) 130, 381, 1137, 1507
BstMBI GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
BstMWI GCNNNNNNNGC 5 cut(s) 406, 764, 1108, 1292, 1567
BstNSI RCATGY 1 cut(s) 989
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 2 cut(s) 398, 441
BstV1I GCAGC 2 cut(s) 229, 779
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
Bsu36I CCTNAGG 2 cut(s) 956, 1163
BsuRI GGCC 4 cut(s) 232, 835, 954, 1561
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 3 cut(s) 450, 1466, 1548
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 1 cut(s) 756
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 1 cut(s) 1572
Cfr10I RCCGGY 1 cut(s) 678
Cfr13I GGNCC 3 cut(s) 230, 719, 952
CseI GACGC 2 cut(s) 398, 502
Csp6I GTAC 4 cut(s) 379, 682, 966, 1532
CspAI ACCGGT 1 cut(s) 678
CviAII CATG 4 cut(s) 179, 218, 986, 1004
CviQI GTAC 4 cut(s) 379, 682, 966, 1532
DdeI CTNAG 8 cut(s) 362, 687, 750, 771, 956, 1083, 1163, 1356
DpnI GATC 5 cut(s) 747, 1047, 1203, 1214, 1234
DpnII GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
DraI TTTAAA 1 cut(s) 697
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 1559
Eam1104I CTCTTC 6 cut(s) 245, 379, 777, 804, 1025, 1062
EarI CTCTTC 6 cut(s) 245, 379, 777, 804, 1025, 1062
Eco130I CCWWGG 1 cut(s) 882
Eco147I AGGCCT 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 719
Eco47III AGCGCT 1 cut(s) 1571
Eco81I CCTNAGG 2 cut(s) 956, 1163
Eco88I CYCGRG 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 4 cut(s) 182, 221, 989, 1007
FaqI GGGAC 4 cut(s) 28, 174, 206, 929
FatI CATG 4 cut(s) 178, 217, 985, 1003
FbaI TGATCA 1 cut(s) 1212
Fnu4HI GCNGC 2 cut(s) 243, 768
Fsp4HI GCNGC 2 cut(s) 243, 768
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 1571
GluI GCNGC 2 cut(s) 243, 768
HaeII RGCGCY 1 cut(s) 1573
HaeIII GGCC 4 cut(s) 232, 835, 954, 1561
HapII CCGG 4 cut(s) 497, 679, 722, 793
HgaI GACGC 2 cut(s) 398, 502
HhaI GCGC 1 cut(s) 1572
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 4 cut(s) 182, 221, 989, 1007
Hin6I GCGC 1 cut(s) 1570
HinP1I GCGC 1 cut(s) 1570
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 5 cut(s) 1015, 1036, 1077, 1151, 1181
HpaII CCGG 4 cut(s) 497, 679, 722, 793
HphI GGTGA 6 cut(s) 30, 668, 899, 1040, 1102, 1349
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 3 cut(s) 781, 943, 1351
Hpy188III TCNNGA 9 cut(s) 535, 562, 662, 749, 1004, 1064, 1178, 1328, 1512
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 2 cut(s) 414, 1454
HpyAV CCTTC 7 cut(s) 57, 249, 458, 523, 891, 1257, 1292
HpyCH4III ACNGT 2 cut(s) 42, 1024
HpyCH4IV ACGT 2 cut(s) 279, 1128
HpyCH4V TGCA 8 cut(s) 400, 443, 481, 707, 713, 758, 995, 1295
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 764, 1108, 1292, 1567
HpyF3I CTNAG 8 cut(s) 362, 687, 750, 771, 956, 1083, 1163, 1356
HpySE526I ACGT 2 cut(s) 279, 1128
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 4 cut(s) 182, 221, 989, 1007
HspAI GCGC 1 cut(s) 1570
KpnI GGTACC 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 1212
Kzo9I GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
LmnI GCTCC 1 cut(s) 1276
Lsp1109I GCAGC 2 cut(s) 229, 779
LweI GCATC 1 cut(s) 1342
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 279, 1128
MaeIII GTNAC 1 cut(s) 674
MalI GATC 5 cut(s) 747, 1047, 1203, 1214, 1234
MboI GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
MfeI CAATTG 2 cut(s) 969, 1187
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 1273
MlyI GAGTC 2 cut(s) 1024, 1030
MseI TTAA 5 cut(s) 428, 696, 734, 821, 873
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 4 cut(s) 497, 679, 722, 793
MspR9I CCNGG 1 cut(s) 794
MunI CAATTG 2 cut(s) 969, 1187
MwoI GCNNNNNNNGC 5 cut(s) 406, 764, 1108, 1292, 1567
NciI CCSGG 1 cut(s) 794
NdeII GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
NlaIII CATG 4 cut(s) 182, 221, 989, 1007
NlaIV GGNNCC 4 cut(s) 6, 683, 747, 1112
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 1 cut(s) 989
PagI TCATGA 1 cut(s) 1003
PaqCI CACCTGC 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 835
PcsI WCGNNNNNNNCGW 1 cut(s) 1258
PfeI GAWTC 3 cut(s) 1077, 1151, 1181
PinAI ACCGGT 1 cut(s) 678
PkrI GCNGC 2 cut(s) 244, 769
PleI GAGTC 2 cut(s) 1023, 1030
PpsI GAGTC 2 cut(s) 1023, 1030
Ppu21I YACGTR 1 cut(s) 1129
PshAI GACNNNNGTC 1 cut(s) 393
PspN4I GGNNCC 4 cut(s) 6, 683, 747, 1112
PspPI GGNCC 3 cut(s) 230, 719, 952
PsrI GAACNNNNNNTAC 2 cut(s) 674, 706
PstI CTGCAG 2 cut(s) 402, 445
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 4 cut(s) 380, 683, 967, 1533
RsaNI GTAC 4 cut(s) 379, 682, 966, 1532
RseI CAYNNNNRTG 1 cut(s) 990
SaqAI TTAA 5 cut(s) 428, 696, 734, 821, 873
SatI GCNGC 2 cut(s) 243, 768
Sau3AI GATC 5 cut(s) 745, 1045, 1201, 1212, 1232
Sau96I GGNCC 3 cut(s) 230, 719, 952
SchI GAGTC 2 cut(s) 1024, 1030
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 1 cut(s) 1273
SfaNI GCATC 1 cut(s) 1342
SfcI CTRYAG 2 cut(s) 398, 441
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 2 cut(s) 839, 1328
SmoI CTYRAG 2 cut(s) 839, 1328
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 1 cut(s) 601
SspI AATATT 1 cut(s) 1474
SspMI CTAG 1 cut(s) 557
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 2 cut(s) 42, 1024
TaiI ACGT 2 cut(s) 282, 1131
TaqI TCGA 5 cut(s) 1063, 1231, 1261, 1449, 1511
TfiI GAWTC 3 cut(s) 1077, 1151, 1181
Tru1I TTAA 5 cut(s) 428, 696, 734, 821, 873
Tru9I TTAA 5 cut(s) 428, 696, 734, 821, 873
TscAI CASTG 3 cut(s) 450, 1473, 1548
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 2 cut(s) 242, 767
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 4 cut(s) 992, 1419, 1437, 1515
TspRI CASTG 3 cut(s) 450, 1473, 1548
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 989
XcmI CCANNNNNNNNNTGG 2 cut(s) 224, 1569
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.