Protein ROOT PRIMORDIUM DEFECTIVE
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01037 |
| fragaria_vesca | FvH4_3g25450 |
| malus_domestica | MD00G1016400.v1.1 MD09G1291100.v1.1 |
| prunus_persica | Prupe.3G002000_v2.0.a1 |
| pyrus_communis | pycom09g19880 pycom17g28260 |
| rosa_chinensis | RchiOBHm_Chr5g0046651 |
| rosa_laevigata | RLG00000034426 |
| rosa_multiflora | Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00034710 |
| rosa_rugosa | Rorug05G0230100 Rorug05G0230600 Rorug05G0230700 |
| rosa_samantha | Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700 |
| rosa_wichuraiana | Rw5G028970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1078 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 557 |
| Acc36I | ACCTGC | 1 cut(s) | 1078 |
| Acc65I | GGTACC | 1 cut(s) | 681 |
| AccB1I | GGYRCC | 2 cut(s) | 681, 1110 |
| AciI | CCGC | 1 cut(s) | 601 |
| AclWI | GGATC | 4 cut(s) | 740, 753, 1053, 1209 |
| AcoI | YGGCCR | 1 cut(s) | 1559 |
| AcsI | RAATTY | 1 cut(s) | 327 |
| AcyI | GRCGYC | 1 cut(s) | 494 |
| AfaI | GTAC | 4 cut(s) | 380, 683, 967, 1533 |
| AfeI | AGCGCT | 1 cut(s) | 1571 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 630, 913, 1265 |
| AflIII | ACRYGT | 1 cut(s) | 1128 |
| AgeI | ACCGGT | 1 cut(s) | 678 |
| AgsI | TTSAA | 9 cut(s) | 27, 287, 304, 316, 461, 487, 529, 847, 1138 |
| AluBI | AGCT | 6 cut(s) | 13, 265, 307, 754, 770, 1228 |
| AluI | AGCT | 6 cut(s) | 13, 265, 307, 754, 770, 1228 |
| Alw21I | GWGCWC | 1 cut(s) | 1273 |
| Alw26I | GTCTC | 4 cut(s) | 130, 381, 1137, 1507 |
| AlwI | GGATC | 4 cut(s) | 740, 753, 1053, 1209 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| Ama87I | CYCGRG | 1 cut(s) | 949 |
| Aor51HI | AGCGCT | 1 cut(s) | 1571 |
| AoxI | GGCC | 4 cut(s) | 230, 833, 952, 1559 |
| ApeKI | GCWGC | 2 cut(s) | 242, 767 |
| ApoI | RAATTY | 1 cut(s) | 327 |
| AsiGI | ACCGGT | 1 cut(s) | 678 |
| Asp718I | GGTACC | 1 cut(s) | 681 |
| AspLEI | GCGC | 1 cut(s) | 1572 |
| AspS9I | GGNCC | 3 cut(s) | 230, 719, 952 |
| AsuC2I | CCSGG | 1 cut(s) | 794 |
| AsuHPI | GGTGA | 6 cut(s) | 30, 668, 899, 1040, 1102, 1349 |
| AvaI | CYCGRG | 1 cut(s) | 949 |
| AvaII | GGWCC | 1 cut(s) | 719 |
| AxyI | CCTNAGG | 2 cut(s) | 956, 1163 |
| BamHI | GGATCC | 1 cut(s) | 745 |
| BanI | GGYRCC | 2 cut(s) | 681, 1110 |
| BbsI | GAAGAC | 1 cut(s) | 555 |
| Bbv12I | GWGCWC | 1 cut(s) | 1273 |
| BbvI | GCAGC | 2 cut(s) | 229, 779 |
| BccI | CCATC | 5 cut(s) | 538, 1283, 1451, 1517, 1547 |
| BclI | TGATCA | 1 cut(s) | 1212 |
| BcnI | CCSGG | 1 cut(s) | 794 |
| BcoDI | GTCTC | 4 cut(s) | 130, 381, 1137, 1507 |
| BfaI | CTAG | 1 cut(s) | 557 |
| BfmI | CTRYAG | 2 cut(s) | 398, 441 |
| BfoI | RGCGCY | 1 cut(s) | 1573 |
| BfuAI | ACCTGC | 1 cut(s) | 1078 |
| BisI | GCNGC | 2 cut(s) | 243, 768 |
| BlsI | GCNGC | 2 cut(s) | 244, 769 |
| Bme1390I | CCNGG | 1 cut(s) | 794 |
| Bme18I | GGWCC | 1 cut(s) | 719 |
| BmeT110I | CYCGRG | 1 cut(s) | 949 |
| BmgT120I | GGNCC | 3 cut(s) | 230, 719, 952 |
| BmiI | GGNNCC | 4 cut(s) | 6, 683, 747, 1112 |
| BmrFI | CCNGG | 1 cut(s) | 794 |
| BmsI | GCATC | 1 cut(s) | 1342 |
| BoxI | GACNNNNGTC | 1 cut(s) | 393 |
| BpiI | GAAGAC | 1 cut(s) | 555 |
| Bpu10I | CCTNAGC | 1 cut(s) | 750 |
| BpuEI | CTTGAG | 2 cut(s) | 824, 1349 |
| BpuMI | CCSGG | 1 cut(s) | 794 |
| BsaAI | YACGTR | 1 cut(s) | 1129 |
| BsaHI | GRCGYC | 1 cut(s) | 494 |
| BsaJI | CCNNGG | 2 cut(s) | 882, 1250 |
| BsaWI | WCCGGW | 1 cut(s) | 678 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 630, 913, 1265 |
| Bse118I | RCCGGY | 1 cut(s) | 678 |
| Bse1I | ACTGG | 2 cut(s) | 1490, 1541 |
| Bse21I | CCTNAGG | 2 cut(s) | 956, 1163 |
| BseDI | CCNNGG | 2 cut(s) | 882, 1250 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 630, 913, 1265 |
| BseMII | CTCAG | 6 cut(s) | 701, 741, 762, 947, 1097, 1347 |
| BseNI | ACTGG | 2 cut(s) | 1490, 1541 |
| BseRI | GAGGAG | 2 cut(s) | 536, 1346 |
| BseXI | GCAGC | 2 cut(s) | 229, 779 |
| BsgI | GTGCAG | 2 cut(s) | 1014, 1314 |
| BshFI | GGCC | 4 cut(s) | 232, 835, 954, 1561 |
| BshNI | GGYRCC | 2 cut(s) | 681, 1110 |
| BshTI | ACCGGT | 1 cut(s) | 678 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 949 |
| BsiSI | CCGG | 4 cut(s) | 497, 679, 722, 793 |
| BslFI | GGGAC | 4 cut(s) | 28, 174, 206, 929 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 630, 913, 1265 |
| BsmAI | GTCTC | 4 cut(s) | 130, 381, 1137, 1507 |
| BsmFI | GGGAC | 4 cut(s) | 28, 174, 206, 929 |
| BsnI | GGCC | 4 cut(s) | 232, 835, 954, 1561 |
| BsoBI | CYCGRG | 1 cut(s) | 949 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1273 |
| Bsp143I | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| BspACI | CCGC | 1 cut(s) | 601 |
| BspANI | GGCC | 4 cut(s) | 232, 835, 954, 1561 |
| BspCNI | CTCAG | 6 cut(s) | 700, 742, 763, 948, 1096, 1348 |
| BspHI | TCATGA | 1 cut(s) | 1003 |
| BspLI | GGNNCC | 4 cut(s) | 6, 683, 747, 1112 |
| BspMAI | CTGCAG | 2 cut(s) | 402, 445 |
| BspMI | ACCTGC | 1 cut(s) | 1078 |
| BspPI | GGATC | 4 cut(s) | 740, 753, 1053, 1209 |
| BspT107I | GGYRCC | 2 cut(s) | 681, 1110 |
| BsrFI | RCCGGY | 1 cut(s) | 678 |
| BsrI | ACTGG | 2 cut(s) | 1490, 1541 |
| BssAI | RCCGGY | 1 cut(s) | 678 |
| BssECI | CCNNGG | 2 cut(s) | 882, 1250 |
| BssMI | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| BssNI | GRCGYC | 1 cut(s) | 494 |
| BssT1I | CCWWGG | 1 cut(s) | 882 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 1024 |
| Bst6I | CTCTTC | 6 cut(s) | 245, 379, 777, 804, 1025, 1062 |
| BstACI | GRCGYC | 1 cut(s) | 494 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1292 |
| BstBAI | YACGTR | 1 cut(s) | 1129 |
| BstC8I | GCNNGC | 1 cut(s) | 756 |
| BstDEI | CTNAG | 8 cut(s) | 362, 687, 750, 771, 956, 1083, 1163, 1356 |
| BstH2I | RGCGCY | 1 cut(s) | 1573 |
| BstHHI | GCGC | 1 cut(s) | 1572 |
| BstKTI | GATC | 5 cut(s) | 748, 1048, 1204, 1215, 1235 |
| BstMAI | GTCTC | 4 cut(s) | 130, 381, 1137, 1507 |
| BstMBI | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 406, 764, 1108, 1292, 1567 |
| BstNSI | RCATGY | 1 cut(s) | 989 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 393 |
| BstSCI | CCNGG | 1 cut(s) | 792 |
| BstSFI | CTRYAG | 2 cut(s) | 398, 441 |
| BstV1I | GCAGC | 2 cut(s) | 229, 779 |
| BstV2I | GAAGAC | 1 cut(s) | 555 |
| BstX2I | RGATCY | 1 cut(s) | 745 |
| BstYI | RGATCY | 1 cut(s) | 745 |
| Bsu36I | CCTNAGG | 2 cut(s) | 956, 1163 |
| BsuRI | GGCC | 4 cut(s) | 232, 835, 954, 1561 |
| BtsI | GCAGTG | 1 cut(s) | 450 |
| BtsIMutI | CAGTG | 3 cut(s) | 450, 1466, 1548 |
| BveI | ACCTGC | 1 cut(s) | 1078 |
| Cac8I | GCNNGC | 1 cut(s) | 756 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CciI | TCATGA | 1 cut(s) | 1003 |
| CfoI | GCGC | 1 cut(s) | 1572 |
| Cfr10I | RCCGGY | 1 cut(s) | 678 |
| Cfr13I | GGNCC | 3 cut(s) | 230, 719, 952 |
| CseI | GACGC | 2 cut(s) | 398, 502 |
| Csp6I | GTAC | 4 cut(s) | 379, 682, 966, 1532 |
| CspAI | ACCGGT | 1 cut(s) | 678 |
| CviAII | CATG | 4 cut(s) | 179, 218, 986, 1004 |
| CviQI | GTAC | 4 cut(s) | 379, 682, 966, 1532 |
| DdeI | CTNAG | 8 cut(s) | 362, 687, 750, 771, 956, 1083, 1163, 1356 |
| DpnI | GATC | 5 cut(s) | 747, 1047, 1203, 1214, 1234 |
| DpnII | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| DraI | TTTAAA | 1 cut(s) | 697 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 557 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 557 |
| EaeI | YGGCCR | 1 cut(s) | 1559 |
| Eam1104I | CTCTTC | 6 cut(s) | 245, 379, 777, 804, 1025, 1062 |
| EarI | CTCTTC | 6 cut(s) | 245, 379, 777, 804, 1025, 1062 |
| Eco130I | CCWWGG | 1 cut(s) | 882 |
| Eco147I | AGGCCT | 1 cut(s) | 835 |
| Eco47I | GGWCC | 1 cut(s) | 719 |
| Eco47III | AGCGCT | 1 cut(s) | 1571 |
| Eco81I | CCTNAGG | 2 cut(s) | 956, 1163 |
| Eco88I | CYCGRG | 1 cut(s) | 949 |
| EcoT14I | CCWWGG | 1 cut(s) | 882 |
| ErhI | CCWWGG | 1 cut(s) | 882 |
| FaeI | CATG | 4 cut(s) | 182, 221, 989, 1007 |
| FaqI | GGGAC | 4 cut(s) | 28, 174, 206, 929 |
| FatI | CATG | 4 cut(s) | 178, 217, 985, 1003 |
| FbaI | TGATCA | 1 cut(s) | 1212 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 768 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 768 |
| FspBI | CTAG | 1 cut(s) | 557 |
| GlaI | GCGC | 1 cut(s) | 1571 |
| GluI | GCNGC | 2 cut(s) | 243, 768 |
| HaeII | RGCGCY | 1 cut(s) | 1573 |
| HaeIII | GGCC | 4 cut(s) | 232, 835, 954, 1561 |
| HapII | CCGG | 4 cut(s) | 497, 679, 722, 793 |
| HgaI | GACGC | 2 cut(s) | 398, 502 |
| HhaI | GCGC | 1 cut(s) | 1572 |
| Hin1I | GRCGYC | 1 cut(s) | 494 |
| Hin1II | CATG | 4 cut(s) | 182, 221, 989, 1007 |
| Hin6I | GCGC | 1 cut(s) | 1570 |
| HinP1I | GCGC | 1 cut(s) | 1570 |
| HindIII | AAGCTT | 1 cut(s) | 1226 |
| HinfI | GANTC | 5 cut(s) | 1015, 1036, 1077, 1151, 1181 |
| HpaII | CCGG | 4 cut(s) | 497, 679, 722, 793 |
| HphI | GGTGA | 6 cut(s) | 30, 668, 899, 1040, 1102, 1349 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 3 cut(s) | 781, 943, 1351 |
| Hpy188III | TCNNGA | 9 cut(s) | 535, 562, 662, 749, 1004, 1064, 1178, 1328, 1512 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| Hpy99I | CGWCG | 2 cut(s) | 414, 1454 |
| HpyAV | CCTTC | 7 cut(s) | 57, 249, 458, 523, 891, 1257, 1292 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 1024 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 1128 |
| HpyCH4V | TGCA | 8 cut(s) | 400, 443, 481, 707, 713, 758, 995, 1295 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 406, 764, 1108, 1292, 1567 |
| HpyF3I | CTNAG | 8 cut(s) | 362, 687, 750, 771, 956, 1083, 1163, 1356 |
| HpySE526I | ACGT | 2 cut(s) | 279, 1128 |
| Hsp92I | GRCGYC | 1 cut(s) | 494 |
| Hsp92II | CATG | 4 cut(s) | 182, 221, 989, 1007 |
| HspAI | GCGC | 1 cut(s) | 1570 |
| KpnI | GGTACC | 1 cut(s) | 685 |
| Ksp22I | TGATCA | 1 cut(s) | 1212 |
| Kzo9I | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| LmnI | GCTCC | 1 cut(s) | 1276 |
| Lsp1109I | GCAGC | 2 cut(s) | 229, 779 |
| LweI | GCATC | 1 cut(s) | 1342 |
| MaeI | CTAG | 1 cut(s) | 557 |
| MaeII | ACGT | 2 cut(s) | 279, 1128 |
| MaeIII | GTNAC | 1 cut(s) | 674 |
| MalI | GATC | 5 cut(s) | 747, 1047, 1203, 1214, 1234 |
| MboI | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| MfeI | CAATTG | 2 cut(s) | 969, 1187 |
| MflI | RGATCY | 1 cut(s) | 745 |
| MhlI | GDGCHC | 1 cut(s) | 1273 |
| MlyI | GAGTC | 2 cut(s) | 1024, 1030 |
| MseI | TTAA | 5 cut(s) | 428, 696, 734, 821, 873 |
| MslI | CAYNNNNRTG | 1 cut(s) | 990 |
| MspA1I | CMGCKG | 1 cut(s) | 770 |
| MspI | CCGG | 4 cut(s) | 497, 679, 722, 793 |
| MspR9I | CCNGG | 1 cut(s) | 794 |
| MunI | CAATTG | 2 cut(s) | 969, 1187 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 406, 764, 1108, 1292, 1567 |
| NciI | CCSGG | 1 cut(s) | 794 |
| NdeII | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| NlaIII | CATG | 4 cut(s) | 182, 221, 989, 1007 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 683, 747, 1112 |
| NmuCI | GTSAC | 1 cut(s) | 674 |
| NspI | RCATGY | 1 cut(s) | 989 |
| PagI | TCATGA | 1 cut(s) | 1003 |
| PaqCI | CACCTGC | 1 cut(s) | 1078 |
| PceI | AGGCCT | 1 cut(s) | 835 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1258 |
| PfeI | GAWTC | 3 cut(s) | 1077, 1151, 1181 |
| PinAI | ACCGGT | 1 cut(s) | 678 |
| PkrI | GCNGC | 2 cut(s) | 244, 769 |
| PleI | GAGTC | 2 cut(s) | 1023, 1030 |
| PpsI | GAGTC | 2 cut(s) | 1023, 1030 |
| Ppu21I | YACGTR | 1 cut(s) | 1129 |
| PshAI | GACNNNNGTC | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 683, 747, 1112 |
| PspPI | GGNCC | 3 cut(s) | 230, 719, 952 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 674, 706 |
| PstI | CTGCAG | 2 cut(s) | 402, 445 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsuI | RGATCY | 1 cut(s) | 745 |
| PvuII | CAGCTG | 1 cut(s) | 770 |
| RsaI | GTAC | 4 cut(s) | 380, 683, 967, 1533 |
| RsaNI | GTAC | 4 cut(s) | 379, 682, 966, 1532 |
| RseI | CAYNNNNRTG | 1 cut(s) | 990 |
| SaqAI | TTAA | 5 cut(s) | 428, 696, 734, 821, 873 |
| SatI | GCNGC | 2 cut(s) | 243, 768 |
| Sau3AI | GATC | 5 cut(s) | 745, 1045, 1201, 1212, 1232 |
| Sau96I | GGNCC | 3 cut(s) | 230, 719, 952 |
| SchI | GAGTC | 2 cut(s) | 1024, 1030 |
| ScrFI | CCNGG | 1 cut(s) | 794 |
| SduI | GDGCHC | 1 cut(s) | 1273 |
| SfaNI | GCATC | 1 cut(s) | 1342 |
| SfcI | CTRYAG | 2 cut(s) | 398, 441 |
| SinI | GGWCC | 1 cut(s) | 719 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 990 |
| SmlI | CTYRAG | 2 cut(s) | 839, 1328 |
| SmoI | CTYRAG | 2 cut(s) | 839, 1328 |
| SseBI | AGGCCT | 1 cut(s) | 835 |
| SsiI | CCGC | 1 cut(s) | 601 |
| SspI | AATATT | 1 cut(s) | 1474 |
| SspMI | CTAG | 1 cut(s) | 557 |
| StuI | AGGCCT | 1 cut(s) | 835 |
| StyD4I | CCNGG | 1 cut(s) | 792 |
| StyI | CCWWGG | 1 cut(s) | 882 |
| TaaI | ACNGT | 2 cut(s) | 42, 1024 |
| TaiI | ACGT | 2 cut(s) | 282, 1131 |
| TaqI | TCGA | 5 cut(s) | 1063, 1231, 1261, 1449, 1511 |
| TfiI | GAWTC | 3 cut(s) | 1077, 1151, 1181 |
| Tru1I | TTAA | 5 cut(s) | 428, 696, 734, 821, 873 |
| Tru9I | TTAA | 5 cut(s) | 428, 696, 734, 821, 873 |
| TscAI | CASTG | 3 cut(s) | 450, 1473, 1548 |
| TseFI | GTSAC | 1 cut(s) | 674 |
| TseI | GCWGC | 2 cut(s) | 242, 767 |
| Tsp45I | GTSAC | 1 cut(s) | 674 |
| TspDTI | ATGAA | 4 cut(s) | 992, 1419, 1437, 1515 |
| TspRI | CASTG | 3 cut(s) | 450, 1473, 1548 |
| VpaK11BI | GGWCC | 1 cut(s) | 719 |
| XapI | RAATTY | 1 cut(s) | 327 |
| XceI | RCATGY | 1 cut(s) | 989 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 224, 1569 |
| XspI | CTAG | 1 cut(s) | 557 |