Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Forward (+)

27734 .. 28268

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgaggagaatatgtctgtatagagacatcccttacgtattcccttactatgatttctcagggctgaggtcaggtacaactgagcaagagaaacatgcttttgcagttgtccatgagatattgagccttgctgcggagaagaaaactcatgtagaacaccttactcatttccgcgaggagttcagggattcagtttttcttagggaagcataccgtgattctcaattgatagacaaggatcgtctgctgattataaaagagaagcttcgatctattattgcagttccacggtatcctagaaggggtgctcccaatagagaggcagacggtgctgaaggagccaatgaggcacaagatggaactgttgatgagggtgaggaatggtctgatactgataactttatgagtgatgaagatgaagagtttgatgatgatgatgtagatgattggagtacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

152

Amino Acids

17.78

Weight (kDa)

4.57

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	134, 172
AclWI	GGATC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	76, 454
AfiI	CCNNNNNNNGG	2 cut(s)	133, 302
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	65
BsaAI	YACGTR	2 cut(s)	37, 456
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 302
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	133, 302
BseMII	CTCAG	3 cut(s)	56, 72, 72
BseRI	GAGGAG	2 cut(s)	19, 191
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	133, 302
BsmAI	GTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	238, 269
BspACI	CCGC	2 cut(s)	134, 172
BspCNI	CTCAG	3 cut(s)	57, 71, 73
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	238, 269
Bst4CI	ACNGT	4 cut(s)	215, 291, 329, 364
Bst6I	CTCTTC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	2 cut(s)	37, 456
BstDEI	CTNAG	4 cut(s)	58, 65, 81, 200
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	241, 272
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	238, 269
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
BstNSI	RCATGY	1 cut(s)	98
BstSNI	TACGTA	1 cut(s)	37
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	75, 453
CviAII	CATG	3 cut(s)	95, 113, 149
CviJI	RGCY	4 cut(s)	64, 126, 265, 341
CviKI_1	RGCY	4 cut(s)	64, 126, 265, 341
CviQI	GTAC	2 cut(s)	75, 453
DdeI	CTNAG	4 cut(s)	58, 65, 81, 200
DpnI	GATC	2 cut(s)	240, 271
DpnII	GATC	2 cut(s)	238, 269
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco105I	TACGTA	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	354
FaeI	CATG	3 cut(s)	98, 116, 152
FaiI	YATR	9 cut(s)	13, 21, 51, 96, 114, 150, 211, 254, 404
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	3 cut(s)	94, 112, 148
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	98, 116, 152
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	188, 218
HphI	GGTGA	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	294, 329
HpyCH4III	ACNGT	4 cut(s)	215, 291, 329, 364
HpyCH4IV	ACGT	2 cut(s)	36, 455
HpyCH4V	TGCA	2 cut(s)	104, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
HpyF3I	CTNAG	4 cut(s)	58, 65, 81, 200
HpySE526I	ACGT	2 cut(s)	36, 455
Hsp92II	CATG	3 cut(s)	98, 116, 152
Kzo9I	GATC	2 cut(s)	238, 269
LmnI	GCTCC	2 cut(s)	313, 338
LpnPI	CCDG	3 cut(s)	45, 57, 169
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	36, 455
MalI	GATC	2 cut(s)	240, 271
MboI	GATC	2 cut(s)	238, 269
MboII	GAAGA	3 cut(s)	151, 425, 431
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	224
MnlI	CCTC	6 cut(s)	60, 169, 313, 340, 364, 370
MunI	CAATTG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
NdeII	GATC	2 cut(s)	238, 269
NlaIII	CATG	3 cut(s)	98, 116, 152
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	188, 218
PkrI	GCNGC	1 cut(s)	133
Ppu21I	YACGTR	2 cut(s)	37, 456
PsiI	TTATAA	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	340
RsaI	GTAC	2 cut(s)	76, 454
RsaNI	GTAC	2 cut(s)	75, 453
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	238, 269
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	6 cut(s)	39, 71, 76, 162, 267, 458
SnaBI	TACGTA	1 cut(s)	37
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	134, 172
SspMI	CTAG	1 cut(s)	297
TaaI	ACNGT	4 cut(s)	215, 291, 329, 364
TaiI	ACGT	2 cut(s)	39, 458
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	188, 218
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	426, 432
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.