FvH4_3g25450

Protein ROOT PRIMORDIUM DEFECTIVE

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
18355837 .. 18358586
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25450.t1

Sequence Viewer

Length: 1623 bp
ATGCTCTTGTCTTCGTCTTCGGTTGTGCCTTCACCCAACAAGGTCTCAATGGAACCATGGCTGTTGCTTTCTTCAACCACAGCTTTACCCGCCGCTACCTTACCCTTTTTCCTGTCTTACAAGTCCTCTTTTCTTTCACGACCCAGACAGTCTGTGAAAACCCATCTCTCAATCTCAATGATAGAGCCAGAAAAGTCAAATTTTTGGGGAAATAGATTGGTTTTACCTGATAGAGATGTTATTTTGGGTGATTTGAAACATGTCCCAGTTGGACCAATACGTGCTGCCGTGAAGAGAAGGAAAGAACTCCCTTTCGACAATGTGATCCAAAGGGATAAGAAGTTGAAGTTAGTTTTGAAGATTAGAAAAATTTTAGTGAGCCAACCTGATAGGATTATGTCACTTAGAGAACTAGGTAGGTATAGAAGAGAACTGGGTTTGCAGAAAAAGAGGCGATTTATTGCATTACTGAAGAAATTCCCGGCGGTGTTTGAGATTGTTGAGGAAGGTGTCTTTTCGTTGAAATTTAAATTGACGCCGGAAGCAGAAAGGCTTTACCTTGAAGAGTTGCAGGTTCGAAATGAGATGGAAGACTTGCTGGTTGTGAAGTTGAGGAAATTATTGATGATGTCATTGGATAAGCGGATTTTGTTGGAGAAGATTGCTCATTTGAAGACTGATTTAGGACTTCCTTTAGAATTTCGTGATACAATTTGTCATCGATACCCACAATACTTTAAAGTTGTTGCAACTGAGAGAGGTCCAGCATTAGAATTAACTCATTGGGATCCTGAGCTTGCTGTATCAGCTGCTGAGTTATCTGAAGAGGAAAATCGTGCTAGAGAACTGGAAGAGAAGGATTTAATTATAGATAGGCCTCTCAAGTTCAATAGACTAAAGTTACCAAGGGGTCTTAATCTTTCCAAGGGTGAGATGAGGAGAATATGTCTGTTTAGAGACATTCCTTACATTTCCCCTTACTCTGATTTCTCGGGGCTGAGGTCAGGTACAATTGAGAAAGAGAAACATGCTTGTGCAGTTGTCCATGAGATCTTGAGCCTTACTGTGGAGAAGAAAACTCTTGTAGATCACCTTACTCATTTCCGCGAGGAGTTTAGGTTCTCTCAGCAGGTCAGGGGAATGCTGATAAGGCACCCTGATATGTTTTATGTGTCGTTGAAAGGAGAAAGGGATTCAGTTTTCCTTAGGGAAGCATATCGTGATTCTCAATTGATAGACAAGGATCGTCTGCTGATTATAAAGGAGAAGCTACGATCTATTATTGCAGTTCCACGGTATCCTAGAAGGGGTGCTCCCAATAGAGAGGCAGATGGTACTGAAGAAACCAATGAGGCACAAGATGGAACTGTTGATGAGGGAGAGGAATGGTCTGAGACTGATAACTTTATGAGTGATGAAGATGATGAGTTTGATGATGATGATGATGACGATGATGATTGGAGTGATGAAGATGAAGATACACCCCCAGATTTCAATGAAGATGGGAAAACATTAAACAATGAAGAGAGCAAACCAATTAATCAAGAAGGCTATTCAACAGAGAATGATGAGAGGGTGCTAGTTCCAGTATTGCCAGATGGTCGGCCAAGAGAGCGCTGGTAA

Protein Analysis

541

Amino Acids

62.83

Weight (kDa)

5.53

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 101 - 428 5.9e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1259
Acc36I ACCTGC 2 cut(s) 562, 1120
AccB1I GGYRCC 1 cut(s) 1152
AccII CGCG 1 cut(s) 1107
AciI CCGC 5 cut(s) 90, 93, 485, 643, 1105
AclWI GGATC 4 cut(s) 319, 782, 795, 1251
AcoI YGGCCR 1 cut(s) 1604
AcsI RAATTY 5 cut(s) 199, 369, 476, 524, 698
AcuI CTGAAG 3 cut(s) 491, 843, 1359
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 1009, 1336
AfeI AGCGCT 1 cut(s) 1616
AfiI CCNNNNNNNGG 2 cut(s) 1066, 1307
AflIII ACRYGT 1 cut(s) 259
AloI GAACNNNNNNTCC 2 cut(s) 1103, 1135
AluBI AGCT 4 cut(s) 83, 796, 809, 1270
AluI AGCT 4 cut(s) 83, 796, 809, 1270
Alw21I GWGCWC 1 cut(s) 1315
Alw26I GTCTC 3 cut(s) 49, 951, 1388
AlwI GGATC 4 cut(s) 319, 782, 795, 1251
AlwNI CAGNNNCTG 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 991
Aor51HI AGCGCT 1 cut(s) 1616
AoxI GGCC 2 cut(s) 875, 1604
ApeKI GCWGC 2 cut(s) 284, 809
ApoI RAATTY 5 cut(s) 199, 369, 476, 524, 698
AseI ATTAAT 1 cut(s) 1539
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 1617
AspS9I GGNCC 2 cut(s) 272, 761
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 4 cut(s) 24, 260, 941, 1082
AsuII TTCGAA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 991
AvaII GGWCC 2 cut(s) 272, 761
AxyI CCTNAGG 1 cut(s) 1205
BamHI GGATCC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 1152
BbsI GAAGAC 4 cut(s) 3, 9, 597, 680
Bbv12I GWGCWC 1 cut(s) 1315
BbvCI CCTCAGC 1 cut(s) 998
BbvI GCAGC 2 cut(s) 271, 796
BccI CCATC 6 cut(s) 171, 580, 1325, 1355, 1496, 1592
BceAI ACGGC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 1308
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 3 cut(s) 49, 951, 1388
BfaI CTAG 4 cut(s) 413, 840, 1302, 1580
BfoI RGCGCY 1 cut(s) 1618
BfuAI ACCTGC 2 cut(s) 562, 1120
BfuI GTATCC 1 cut(s) 1308
BglII AGATCT 1 cut(s) 1050
BisI GCNGC 3 cut(s) 93, 285, 810
BlsI GCNGC 3 cut(s) 94, 286, 811
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 272, 761
BmeT110I CYCGRG 1 cut(s) 991
BmgT120I GGNCC 2 cut(s) 272, 761
BmiI GGNNCC 3 cut(s) 54, 789, 1154
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 2 cut(s) 260, 443
BmuI ACTGGG 2 cut(s) 260, 443
BpiI GAAGAC 4 cut(s) 3, 9, 597, 680
Bpu10I CCTNAGC 2 cut(s) 792, 998
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 2 cut(s) 866, 1075
BpuMI CCSGG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 721
BsaAI YACGTR 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 4 cut(s) 56, 905, 924, 1292
BsaXI ACNNNNNCTCC 4 cut(s) 931, 961, 1103, 1133
Bsc4I CCNNNNNNNGG 2 cut(s) 1066, 1307
Bse1I ACTGG 4 cut(s) 266, 438, 852, 1586
Bse21I CCTNAGG 1 cut(s) 1205
BseCI ATCGAT 1 cut(s) 721
BseDI CCNNGG 4 cut(s) 56, 905, 924, 1292
BseLI CCNNNNNNNGG 2 cut(s) 1066, 1307
BseMII CTCAG 6 cut(s) 744, 783, 804, 989, 1139, 1383
BseNI ACTGG 4 cut(s) 266, 438, 852, 1586
BseRI GAGGAG 2 cut(s) 952, 1124
BseXI GCAGC 2 cut(s) 271, 796
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 877, 1606
BshNI GGYRCC 1 cut(s) 1152
BshVI ATCGAT 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 1315
BsiHKCI CYCGRG 1 cut(s) 991
BsiSI CCGG 2 cut(s) 482, 539
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 1066, 1307
BsmAI GTCTC 3 cut(s) 49, 951, 1388
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 1146
BsnI GGCC 2 cut(s) 877, 1606
Bso31I GGTCTC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 991
Bsp119I TTCGAA 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 1315
Bsp143I GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 5 cut(s) 90, 93, 485, 643, 1105
BspANI GGCC 2 cut(s) 877, 1606
BspCNI CTCAG 6 cut(s) 745, 784, 805, 990, 1138, 1384
BspDI ATCGAT 1 cut(s) 721
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 3 cut(s) 54, 789, 1154
BspMI ACCTGC 2 cut(s) 562, 1120
BspPI GGATC 4 cut(s) 319, 782, 795, 1251
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 1152
BspTNI GGTCTC 1 cut(s) 49
BsrI ACTGG 4 cut(s) 266, 438, 852, 1586
BssECI CCNNGG 4 cut(s) 56, 905, 924, 1292
BssMI GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 3 cut(s) 56, 905, 924
Bst4CI ACNGT 4 cut(s) 150, 1066, 1296, 1369
Bst6I CTCTTC 6 cut(s) 287, 421, 558, 819, 846, 1518
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 8 cut(s) 404, 753, 792, 813, 998, 1125, 1205, 1392
BstDSI CCRYGG 2 cut(s) 56, 1292
BstFNI CGCG 1 cut(s) 1107
BstH2I RGCGCY 1 cut(s) 1618
BstHHI GCGC 1 cut(s) 1617
BstKTI GATC 6 cut(s) 327, 790, 1053, 1090, 1246, 1277
BstMAI GTCTC 3 cut(s) 49, 951, 1388
BstMBI GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
BstMWI GCNNNNNNNGC 4 cut(s) 89, 806, 1150, 1612
BstNSI RCATGY 2 cut(s) 263, 1031
BstSCI CCNGG 1 cut(s) 480
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 2 cut(s) 271, 796
BstV2I GAAGAC 4 cut(s) 3, 9, 597, 680
BstX2I RGATCY 2 cut(s) 787, 1050
BstYI RGATCY 2 cut(s) 787, 1050
Bsu15I ATCGAT 1 cut(s) 721
Bsu36I CCTNAGG 1 cut(s) 1205
BsuI GTATCC 1 cut(s) 1308
BsuRI GGCC 2 cut(s) 877, 1606
BsuTUI ATCGAT 1 cut(s) 721
BtgI CCRYGG 2 cut(s) 56, 1292
BveI ACCTGC 2 cut(s) 562, 1120
Cac8I GCNNGC 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 1 cut(s) 1617
Cfr13I GGNCC 2 cut(s) 272, 761
ClaI ATCGAT 1 cut(s) 721
CseI GACGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 1008, 1335
CviAII CATG 4 cut(s) 57, 260, 1028, 1046
CviQI GTAC 2 cut(s) 1008, 1335
DdeI CTNAG 8 cut(s) 404, 753, 792, 813, 998, 1125, 1205, 1392
DpnI GATC 6 cut(s) 326, 789, 1052, 1089, 1245, 1276
DpnII GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
DraI TTTAAA 2 cut(s) 529, 739
EaeI YGGCCR 1 cut(s) 1604
Eam1104I CTCTTC 6 cut(s) 287, 421, 558, 819, 846, 1518
EarI CTCTTC 6 cut(s) 287, 421, 558, 819, 846, 1518
Eco130I CCWWGG 3 cut(s) 56, 905, 924
Eco147I AGGCCT 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 272, 761
Eco47III AGCGCT 1 cut(s) 1616
Eco57I CTGAAG 3 cut(s) 491, 843, 1359
Eco81I CCTNAGG 1 cut(s) 1205
Eco88I CYCGRG 1 cut(s) 991
EcoT14I CCWWGG 3 cut(s) 56, 905, 924
ErhI CCWWGG 3 cut(s) 56, 905, 924
FaeI CATG 4 cut(s) 60, 263, 1031, 1049
FaqI GGGAC 1 cut(s) 248
FatI CATG 4 cut(s) 56, 259, 1027, 1045
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 93, 285, 810
Fsp4HI GCNGC 3 cut(s) 93, 285, 810
FspBI CTAG 4 cut(s) 413, 840, 1302, 1580
GlaI GCGC 1 cut(s) 1616
GluI GCNGC 3 cut(s) 93, 285, 810
HaeII RGCGCY 1 cut(s) 1618
HaeIII GGCC 2 cut(s) 877, 1606
HapII CCGG 2 cut(s) 482, 539
HgaI GACGC 1 cut(s) 544
HhaI GCGC 1 cut(s) 1617
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 4 cut(s) 60, 263, 1031, 1049
Hin6I GCGC 1 cut(s) 1615
HinP1I GCGC 1 cut(s) 1615
HinfI GANTC 2 cut(s) 1193, 1223
HpaII CCGG 2 cut(s) 482, 539
HphI GGTGA 4 cut(s) 24, 260, 941, 1082
Hpy188I TCNGA 3 cut(s) 823, 985, 1393
Hpy188III TCNNGA 6 cut(s) 138, 704, 791, 1054, 1220, 1544
HpyAV CCTTC 6 cut(s) 39, 291, 500, 850, 1299, 1541
HpyCH4III ACNGT 4 cut(s) 150, 1066, 1296, 1369
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 442, 464, 571, 749, 1037, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 806, 1150, 1612
HpyF3I CTNAG 8 cut(s) 404, 753, 792, 813, 998, 1125, 1205, 1392
HpySE526I ACGT 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 4 cut(s) 60, 263, 1031, 1049
HspAI GCGC 1 cut(s) 1615
Kzo9I GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
LmnI GCTCC 1 cut(s) 1318
Lsp1109I GCAGC 2 cut(s) 271, 796
MaeI CTAG 4 cut(s) 413, 840, 1302, 1580
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 399, 900
MalI GATC 6 cut(s) 326, 789, 1052, 1089, 1245, 1276
MboI GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
MfeI CAATTG 2 cut(s) 1011, 1229
MflI RGATCY 2 cut(s) 787, 1050
MhlI GDGCHC 1 cut(s) 1315
MmeI TCCRAC 2 cut(s) 250, 633
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 7 cut(s) 528, 738, 776, 863, 915, 1514, 1539
MslI CAYNNNNRTG 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 2 cut(s) 482, 539
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 2 cut(s) 1011, 1229
Mva1269I GAATGC 1 cut(s) 1146
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 4 cut(s) 89, 806, 1150, 1612
NciI CCSGG 1 cut(s) 482
NcoI CCATGG 1 cut(s) 56
NdeII GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
NlaIII CATG 4 cut(s) 60, 263, 1031, 1049
NlaIV GGNNCC 3 cut(s) 54, 789, 1154
NmuCI GTSAC 1 cut(s) 399
NspI RCATGY 2 cut(s) 263, 1031
NspV TTCGAA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 877
PciI ACATGT 1 cut(s) 259
PctI GAATGC 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 1193, 1223
PkrI GCNGC 3 cut(s) 94, 286, 811
Ppu21I YACGTR 1 cut(s) 281
PscI ACATGT 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 1539
PsiI TTATAA 1 cut(s) 1259
PspN4I GGNNCC 3 cut(s) 54, 789, 1154
PspPI GGNCC 2 cut(s) 272, 761
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 787, 1050
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 2 cut(s) 1009, 1336
RsaNI GTAC 2 cut(s) 1008, 1335
RseI CAYNNNNRTG 1 cut(s) 1032
SaqAI TTAA 7 cut(s) 528, 738, 776, 863, 915, 1514, 1539
SatI GCNGC 3 cut(s) 93, 285, 810
Sau3AI GATC 6 cut(s) 324, 787, 1050, 1087, 1243, 1274
Sau96I GGNCC 2 cut(s) 272, 761
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 1315
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 2 cut(s) 272, 761
SmiI ATTTAAAT 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 881, 1054
SmoI CTYRAG 2 cut(s) 881, 1054
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 5 cut(s) 90, 93, 485, 643, 1105
SspMI CTAG 4 cut(s) 413, 840, 1302, 1580
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 3 cut(s) 56, 905, 924
SwaI ATTTAAAT 1 cut(s) 529
TaaI ACNGT 4 cut(s) 150, 1066, 1296, 1369
TaiI ACGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 315, 577, 721
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 1193, 1223
Tru1I TTAA 7 cut(s) 528, 738, 776, 863, 915, 1514, 1539
Tru9I TTAA 7 cut(s) 528, 738, 776, 863, 915, 1514, 1539
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 2 cut(s) 284, 809
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 5 cut(s) 1431, 1482, 1488, 1512, 1536
VpaK11BI GGWCC 2 cut(s) 272, 761
VspI ATTAAT 1 cut(s) 1539
XapI RAATTY 5 cut(s) 199, 369, 476, 524, 698
XceI RCATGY 2 cut(s) 263, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 1614
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 4 cut(s) 413, 840, 1302, 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.