Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Forward (+)

26400 .. 27230

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggtctatttgttggagaagattgctcatttgaggaccgatttagcgcttcctttagaatttcgtgacgcaatttgtcatcgatacccacagtactttaaagttgttgcaactgcgagagggctgaggtcaggtacaactgagcaagagaaacatgcttttgcagttgtccatgagatattgagccttgctgcggagaagaaaactcatgtagaacaccttactcatttccgcgaggagttcagggattcagtttttcttagggaagcataccgtgattctcaattgatagacaaggatcgtctgctgattataaaagagaagcttcgatctattattgcagttccacggtatcctagaaggggtgctcccaatagagaggcagacggtgctgaaggagccaatgaggcacaagatggaactgttgatgagggtgaggaatggtctgatactgataactttatgagtgatgaagatgaagagtttgatgatgatgatgtagatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

169

Amino Acids

19.55

Weight (kDa)

4.8

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	194, 232
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	95, 136
AfeI	AGCGCT	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	193, 362
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmcAI	AGTACT	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 362
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	193, 362
BseMII	CTCAG	2 cut(s)	116, 132
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	193, 362
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	298, 329
BspACI	CCGC	2 cut(s)	194, 232
BspCNI	CTCAG	2 cut(s)	117, 133
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	298, 329
Bst4CI	ACNGT	5 cut(s)	93, 275, 351, 389, 424
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	125, 141, 260
BstDSI	CCRYGG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	301, 332
BstMBI	GATC	2 cut(s)	298, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 398, 407
BstNSI	RCATGY	1 cut(s)	158
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	363
BsuTUI	ATCGAT	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	82
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	94, 135
CviAII	CATG	3 cut(s)	155, 173, 209
CviJI	RGCY	4 cut(s)	124, 186, 325, 401
CviKI_1	RGCY	4 cut(s)	124, 186, 325, 401
CviQI	GTAC	2 cut(s)	94, 135
DdeI	CTNAG	3 cut(s)	125, 141, 260
DpnI	GATC	2 cut(s)	300, 331
DpnII	GATC	2 cut(s)	298, 329
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	36
Eco47III	AGCGCT	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	414
FaeI	CATG	3 cut(s)	158, 176, 212
FaiI	YATR	6 cut(s)	156, 174, 210, 271, 314, 464
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	3 cut(s)	154, 172, 208
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	50
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	158, 176, 212
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	248, 278
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	354, 389
HpyCH4III	ACNGT	5 cut(s)	93, 275, 351, 389, 424
HpyCH4V	TGCA	3 cut(s)	110, 164, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 398, 407
HpyF3I	CTNAG	3 cut(s)	125, 141, 260
Hsp92II	CATG	3 cut(s)	158, 176, 212
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	298, 329
LmnI	GCTCC	2 cut(s)	373, 398
LpnPI	CCDG	2 cut(s)	117, 229
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	300, 331
MboI	GATC	2 cut(s)	298, 329
MboII	GAAGA	4 cut(s)	31, 211, 485, 491
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	3 cut(s)	59, 72, 284
MnlI	CCTC	8 cut(s)	27, 113, 120, 229, 373, 400, 424, 430
MseI	TTAA	1 cut(s)	99
MunI	CAATTG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	389, 398, 407
NdeII	GATC	2 cut(s)	298, 329
NlaIII	CATG	3 cut(s)	158, 176, 212
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	248, 278
PkrI	GCNGC	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	2 cut(s)	95, 136
RsaNI	GTAC	2 cut(s)	94, 135
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	298, 329
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	4 cut(s)	131, 136, 222, 327
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	59, 72, 284
SsiI	CCGC	2 cut(s)	194, 232
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	5 cut(s)	93, 275, 351, 389, 424
TaqI	TCGA	2 cut(s)	82, 328
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	59, 72, 284
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	248, 278
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	486, 492
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.