Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Reverse (-)

24061084 .. 24061440

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTTCTCTTGAGGAAGTTACTGCAAGCTTCCAAGCATCTCTTGCCCTAGCAGGAGATGATGTAGTTGATATCACTATGCTGTCACGTGGAAAAACTAGAAGAAATTCTCAAGCCTACTTGTTGGGAAGATCCCTATCTCCCAAGCCTGTGGAAATCAATGATCTTCGTCGTCACTTTCGTAGGATTTGGGTGGTGGAAAAAAGCTTCAAAATTCAAGAGAGATCAAACTCCCTTTTCCTCTTCTCTTTTGATCACCGTGGCGACCTGCGCAAGGTGATTAGGGGAGGGCCTTGGAATTATGCTCGAGCTCCAATGGTGTTGATGGAATATGATCGATGGTGTAACACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

118

Amino Acids

13.68

Weight (kDa)

9.99

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	39 - 115	1.4e-13	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	106, 213
AcvI	CACGTG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	211, 218
AluBI	AGCT	3 cut(s)	30, 207, 311
AluI	AGCT	3 cut(s)	30, 207, 311
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	106, 213
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	248, 289
AvaI	CYCGRG	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	2 cut(s)	319, 333
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	2 cut(s)	50, 99
BfuAI	ACCTGC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	290
BmsI	GCATC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	32, 96
Bsa29I	ATCGAT	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	259, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	259, 293
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	274
BsnI	GGCC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	131, 163, 224, 253, 334
BspANI	GGCC	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	259, 293
BssMI	GATC	5 cut(s)	131, 163, 224, 253, 334
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	134, 166, 227, 256, 337
BstMBI	GATC	5 cut(s)	131, 163, 224, 253, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 270
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	292
BsuTUI	ATCGAT	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	337
CviJI	RGCY	7 cut(s)	5, 30, 116, 148, 207, 292, 311
CviKI_1	RGCY	7 cut(s)	5, 30, 116, 148, 207, 292, 311
DpnI	GATC	5 cut(s)	133, 165, 226, 255, 336
DpnII	GATC	5 cut(s)	131, 163, 224, 253, 334
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	293
FaiI	YATR	3 cut(s)	80, 303, 333
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FbaI	TGATCA	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	313
FspBI	CTAG	2 cut(s)	50, 99
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	28, 205
HphI	GGTGA	2 cut(s)	248, 289
Hpy188III	TCNNGA	2 cut(s)	11, 218
Hpy99I	CGWCG	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 270
HpySE526I	ACGT	1 cut(s)	88
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	131, 163, 224, 253, 334
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	3 cut(s)	39, 162, 281
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	50, 99
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	4 cut(s)	19, 84, 173, 344
MalI	GATC	5 cut(s)	133, 165, 226, 255, 336
MboI	GATC	5 cut(s)	131, 163, 224, 253, 334
MboII	GAAGA	4 cut(s)	114, 141, 158, 235
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	106, 213, 298
MnlI	CCTC	3 cut(s)	7, 251, 281
MroXI	GAANNNNTTC	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	44, 270
NdeII	GATC	5 cut(s)	131, 163, 224, 253, 334
NmuCI	GTSAC	2 cut(s)	84, 173
NsbI	TGCGCA	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	106
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	313
PspCI	CACGTG	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	290
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	313
Sau3AI	GATC	5 cut(s)	131, 163, 224, 253, 334
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	6 cut(s)	32, 91, 209, 270, 279, 313
SfaNI	GCATC	1 cut(s)	47
Sfr274I	CTCGAG	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	3 cut(s)	11, 111, 306
SmoI	CTYRAG	3 cut(s)	11, 111, 306
Sse9I	AATT	3 cut(s)	106, 213, 298
SspMI	CTAG	2 cut(s)	50, 99
SstI	GAGCTC	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	307, 337
TasI	AATT	3 cut(s)	106, 213, 298
TseFI	GTSAC	2 cut(s)	84, 173
Tsp45I	GTSAC	2 cut(s)	84, 173
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	106, 213
XhoI	CTCGAG	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	2 cut(s)	50, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.