Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Forward (+)

20722203 .. 20724472

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATCGGATTGGTTATTTCAACAGATATGGTGGACTGCTTAATGTCGAGAGCTCAACAAATGATGGAACTTAAGCTGTTTCCTTCTTCCACCAAGTCCCTTTCTTTGCCCTTGTTTCTCTCCTCCTCCTCTTGCACCAAATCTCCTTTTCTTCTCAAACCCAAGCAATCTCTCAAAACCCCCCATTTCTCGCTCTCCCAAAAATCCCAGTTCTGGGGAAATGGTTTAGTTTTACACGAGAGAGATGCTGCTTGGGGTAACCTCGCCAAAACCACCCATGTCCCATTTGGCCCAATATGTGCTGCTGCTGTCAAGAGAAGGAAAGAGCTTCCCTTTGACAACGTCATTCAAAAGGATAAGAAGCTGAAGCTGGTTCTCAAGATACGCAAGATTTTAGTCAGCCAACCTGATAGAGTTATGTCGCTTAGAGAGTTAGGTAGGTACAGGAGAGAATTGGGTCTGCAGAAAAAGCGCCGTTTCATTGCCCTTTTAAAGAAATTCCCAGCCGTGTTTGAGATTGTTGAAGAAGGGGTTTATTCCTTGCAATTTAAACTGACTCCCGAAGCCGAAAGGCTTTATTTTGAGGAGTTGAAGGTTAGGAATGAGATGGAAGACCTGCTGGTGGTCAGGTTGAGGAAATTGTTGATGATGTCGTTGGATAAGCGGATTCTGTTGGAAAAGATTGCCCATTTGAGAAATGATTTAGGGCTTCCCCAGGAGTTTCGTGACACTATTTGTCACCGGTACCCACAGTTCTTTAAAGTAGTTGCAACTGCGAGAGGTCCGGCATTAGAATTAACTCATTGGGACCCTGAACTTGCAGTCTCAGCAGCTGAGTTGTCTGAAGAGGAAAACCGGGTTAGAGAGATAGAAGAGAAGGATTTGATTATAGATAGGCCTATCAAGTTCAATAGACTAAAGCTGCCAAAGGGCCTCAATCTTTCAAAGGGTGAGATGAGGAGGATATGCCTGTTTAGAGACATACCTTATATATCCCCATACTCTGATTTCTCGGGACTGAGATCAGGTACTATTGAGAAAGAGAAACATGCTTGTGCGGTTGTTCATGAGATTTTGAGTCTTACTGTGGAGAAGAGAACTCTTGTGGATCACCTTACTCATTTTCGAGAAGAGTTTAAGTTCTCTCAACAGGTGAGGGGGAAGCATATCGTGATTCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

395

Amino Acids

45.69

Weight (kDa)

9.69

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	624
Acc65I	GGTACC	1 cut(s)	744
AccB1I	GGYRCC	1 cut(s)	744
AciI	CCGC	2 cut(s)	664, 1058
AclWI	GGATC	1 cut(s)	1116
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	386, 864
AfaI	GTAC	3 cut(s)	443, 746, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	213, 214, 622
AflII	CTTAAG	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	741
AgsI	TTSAA	6 cut(s)	21, 350, 524, 592, 910, 945
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	7 cut(s)	53, 76, 328, 364, 370, 833, 922
AluI	AGCT	7 cut(s)	53, 76, 328, 364, 370, 833, 922
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	2 cut(s)	829, 972
AlwI	GGATC	1 cut(s)	1116
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	1012
AoxI	GGCC	3 cut(s)	289, 896, 931
ApeKI	GCWGC	5 cut(s)	248, 302, 305, 830, 922
ApoI	RAATTY	1 cut(s)	497
AsiGI	ACCGGT	1 cut(s)	741
Asp718I	GGTACC	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	4 cut(s)	290, 782, 808, 931
AsuC2I	CCSGG	1 cut(s)	857
AsuHPI	GGTGA	4 cut(s)	731, 962, 1103, 1165
AvaI	CYCGRG	1 cut(s)	1012
AvaII	GGWCC	2 cut(s)	782, 808
BanI	GGYRCC	1 cut(s)	744
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	5 cut(s)	235, 289, 292, 842, 909
BccI	CCATC	2 cut(s)	58, 601
BceAI	ACGGC	2 cut(s)	459, 491
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	716
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	2 cut(s)	829, 972
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	475
BfrI	CTTAAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	5 cut(s)	249, 303, 306, 831, 923
BlsI	GCNGC	5 cut(s)	250, 304, 307, 832, 924
Bme1390I	CCNGG	2 cut(s)	716, 857
Bme18I	GGWCC	2 cut(s)	782, 808
BmeT110I	CYCGRG	1 cut(s)	1012
BmgT120I	GGNCC	4 cut(s)	290, 782, 808, 931
BmiI	GGNNCC	3 cut(s)	746, 809, 810
BmrFI	CCNGG	2 cut(s)	716, 857
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	714
BsaWI	WCCGGW	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 214, 622
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	714
BseLI	CCNNNNNNNGG	3 cut(s)	213, 214, 622
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	825, 840, 1010
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	5 cut(s)	112, 115, 118, 599, 973
BseXI	GCAGC	5 cut(s)	235, 289, 292, 842, 909
BseYI	CCCAGC	1 cut(s)	502
BshFI	GGCC	3 cut(s)	291, 898, 933
BshNI	GGYRCC	1 cut(s)	744
BshTI	ACCGGT	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	1012
BsiSI	CCGG	3 cut(s)	742, 785, 856
BslFI	GGGAC	4 cut(s)	82, 266, 821, 1029
BslI	CCNNNNNNNGG	3 cut(s)	213, 214, 622
BsmAI	GTCTC	2 cut(s)	829, 972
BsmFI	GGGAC	4 cut(s)	82, 266, 821, 1029
BsnI	GGCC	3 cut(s)	291, 898, 933
BsoBI	CYCGRG	1 cut(s)	1012
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	3, 1022, 1108
BspACI	CCGC	2 cut(s)	664, 1058
BspANI	GGCC	3 cut(s)	291, 898, 933
BspCNI	CTCAG	3 cut(s)	826, 839, 1011
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	3 cut(s)	746, 809, 810
BspMAI	CTGCAG	1 cut(s)	465
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	1116
BspT107I	GGYRCC	1 cut(s)	744
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	3 cut(s)	3, 1022, 1108
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	753, 1087
Bst6I	CTCTTC	4 cut(s)	840, 867, 1088, 1125
BstAFI	CTTAAG	1 cut(s)	71
BstDEI	CTNAG	4 cut(s)	425, 826, 834, 1019
BstEII	GGTNACC	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	3 cut(s)	6, 1025, 1111
BstMAI	GTCTC	2 cut(s)	829, 972
BstMBI	GATC	3 cut(s)	3, 1022, 1108
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 827
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	1052
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	714, 855
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	5 cut(s)	235, 289, 292, 842, 909
BstV2I	GAAGAC	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	291, 898, 933
BveI	ACCTGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	4 cut(s)	290, 782, 808, 931
Csp6I	GTAC	3 cut(s)	442, 745, 1029
CspAI	ACCGGT	1 cut(s)	741
CviAII	CATG	3 cut(s)	278, 1049, 1067
CviQI	GTAC	3 cut(s)	442, 745, 1029
DdeI	CTNAG	4 cut(s)	425, 826, 834, 1019
DpnI	GATC	3 cut(s)	5, 1024, 1110
DpnII	GATC	3 cut(s)	3, 1022, 1108
DraI	TTTAAA	3 cut(s)	492, 550, 760
Eam1104I	CTCTTC	4 cut(s)	840, 867, 1088, 1125
EarI	CTCTTC	4 cut(s)	840, 867, 1088, 1125
Ecl136II	GAGCTC	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	782, 808
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	386, 864
Eco88I	CYCGRG	1 cut(s)	1012
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	53
EcoO109I	RGGNCCY	2 cut(s)	808, 931
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	3 cut(s)	281, 1052, 1070
FaqI	GGGAC	4 cut(s)	82, 266, 821, 1029
FatI	CATG	3 cut(s)	277, 1048, 1066
Fnu4HI	GCNGC	5 cut(s)	249, 303, 306, 831, 923
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	249, 303, 306, 831, 923
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	5 cut(s)	249, 303, 306, 831, 923
GsaI	CCCAGC	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	3 cut(s)	291, 898, 933
HapII	CCGG	3 cut(s)	742, 785, 856
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	281, 1052, 1070
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	556, 667, 1078, 1174
HpaII	CCGG	3 cut(s)	742, 785, 856
HphI	GGTGA	4 cut(s)	731, 962, 1103, 1165
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	8, 844, 1006
Hpy188III	TCNNGA	9 cut(s)	48, 313, 379, 560, 725, 1014, 1067, 1127, 1171
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	93, 312, 521, 586, 871
HpyCH4III	ACNGT	2 cut(s)	753, 1087
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	5 cut(s)	135, 463, 544, 770, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 827
HpyF3I	CTNAG	4 cut(s)	425, 826, 834, 1019
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	281, 1052, 1070
HspAI	GCGC	1 cut(s)	472
KflI	GGGWCCC	1 cut(s)	808
KpnI	GGTACC	1 cut(s)	748
Kzo9I	GATC	3 cut(s)	3, 1022, 1108
Lsp1109I	GCAGC	5 cut(s)	235, 289, 292, 842, 909
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	257, 725, 737
MalI	GATC	3 cut(s)	5, 1024, 1110
MboI	GATC	3 cut(s)	3, 1022, 1108
MboII	GAAGA	8 cut(s)	78, 143, 536, 623, 857, 884, 1105, 1142
MfeI	CAATTG	1 cut(s)	1180
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	6 cut(s)	452, 497, 545, 638, 794, 1180
MlyI	GAGTC	2 cut(s)	550, 1087
MmeI	TCCRAC	2 cut(s)	636, 654
MseI	TTAA	7 cut(s)	41, 72, 491, 549, 759, 797, 1137
MslI	CAYNNNNRTG	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	3 cut(s)	742, 785, 856
MspR9I	CCNGG	2 cut(s)	716, 857
MunI	CAATTG	1 cut(s)	1180
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	469, 827
NciI	CCSGG	1 cut(s)	857
NdeII	GATC	3 cut(s)	3, 1022, 1108
NlaIII	CATG	3 cut(s)	281, 1052, 1070
NlaIV	GGNNCC	3 cut(s)	746, 809, 810
NmuCI	GTSAC	2 cut(s)	725, 737
NspI	RCATGY	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	667, 1174
PflFI	GACNNNGTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	741
PkrI	GCNGC	5 cut(s)	250, 304, 307, 832, 924
PleI	GAGTC	2 cut(s)	550, 1086
PpsI	GAGTC	2 cut(s)	550, 1086
PpuMI	RGGWCCY	1 cut(s)	808
Psp124BI	GAGCTC	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	1 cut(s)	714
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	746, 809, 810
PspPI	GGNCC	4 cut(s)	290, 782, 808, 931
PspPPI	RGGWCCY	1 cut(s)	808
PsrI	GAACNNNNNNTAC	2 cut(s)	737, 769
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	833
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	443, 746, 1030
RsaNI	GTAC	3 cut(s)	442, 745, 1029
RseI	CAYNNNNRTG	1 cut(s)	1053
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	7 cut(s)	41, 72, 491, 549, 759, 797, 1137
SatI	GCNGC	5 cut(s)	249, 303, 306, 831, 923
Sau3AI	GATC	3 cut(s)	3, 1022, 1108
Sau96I	GGNCC	4 cut(s)	290, 782, 808, 931
SchI	GAGTC	2 cut(s)	550, 1087
ScrFI	CCNGG	2 cut(s)	716, 857
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	461
SinI	GGWCC	2 cut(s)	782, 808
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	2 cut(s)	71, 377
SmoI	CTYRAG	2 cut(s)	71, 377
Sse9I	AATT	6 cut(s)	452, 497, 545, 638, 794, 1180
SseBI	AGGCCT	1 cut(s)	898
SsiI	CCGC	2 cut(s)	664, 1058
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	2 cut(s)	714, 855
TaaI	ACNGT	2 cut(s)	753, 1087
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	47, 1126
TasI	AATT	6 cut(s)	452, 497, 545, 638, 794, 1180
TfiI	GAWTC	2 cut(s)	667, 1174
Tru1I	TTAA	7 cut(s)	41, 72, 491, 549, 759, 797, 1137
Tru9I	TTAA	7 cut(s)	41, 72, 491, 549, 759, 797, 1137
TseFI	GTSAC	2 cut(s)	725, 737
TseI	GCWGC	5 cut(s)	248, 302, 305, 830, 922
Tsp45I	GTSAC	2 cut(s)	725, 737
TspDTI	ATGAA	2 cut(s)	469, 1055
Tth111I	GACNNNGTC	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	782, 808
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	1052
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.