Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Reverse (-)

42605053 .. 42628351

Gene Structure 23299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGCAGCTCTCAATGGAACCAAAGCTGTTGCTTTCTTCAACCACAGCCTTACCAGCCACTTCCTTACCCTGTTTTCTTTCATACAAGTCTCCTTTTCATTTAAGATCGAAACAGTCTGTGAAAACCCATCTCCCAATCTCAAGGATACAGCCGGAAAAATCAAACTTTTGGGGAAATAGTTTGGTTTTACCTGAGAGAGATGTTATTTTGGGTGATTTGAGACATGTCCCAGTTGGACCGATACGTGCTGCTGTGAAGAGAAGGAAAGAACTTCCTTTCGACAATGTGATCCAAAGGGATAAGAAGTTGAAGTTAGTTTTGAAGATTAGAAAAATTTTAGTGGGCCAACCTGATAGAATTATGTCACTTAGGGAATTAGGTAGGTATAGAAGAGAACTGGGTCTGCAGAAAAAGAGGCGGTTTATTGCATTACTGAAGAAGTTCCCTGCTGTGTTTGAGATTGTTGAAGAAGGTGTATTTTCGTTGAAATTTAAATTAACGCCCGAAGCAGAAAGGCTTTATCTTGAAGAGTTGCAGGTTCGAAATGAGATGGAAGACTTGCTGGTCGTGAAGTTGAGGAAATTATTGATGATGTCATTAGATAAACGGATTTTGTTGGAGAAGATTGCTCATTTGAGGACCGATTTAGCGCTTCCTTTAGAATTTCGTGATACAATTTGTCATCGATACCCACAGTATTTTAAAGTTGTTGCAACTGCGAGAGGTCCGGCATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

247

Amino Acids

28.79

Weight (kDa)

10.17

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	90 - 245	2.1e-43	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	529
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	3 cut(s)	336, 491, 665
AcuI	CTGAAG	1 cut(s)	458
AfeI	AGCGCT	1 cut(s)	654
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	6 cut(s)	42, 313, 325, 470, 490, 530
AluBI	AGCT	2 cut(s)	10, 28
AluI	AGCT	2 cut(s)	10, 28
Alw26I	GTCTC	2 cut(s)	96, 217
AlwI	GGATC	1 cut(s)	286
Aor51HI	AGCGCT	1 cut(s)	654
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	7, 251
ApoI	RAATTY	3 cut(s)	336, 491, 665
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	4 cut(s)	239, 346, 642, 728
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	3 cut(s)	239, 642, 728
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	19, 238
BccI	CCATC	2 cut(s)	138, 547
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	96, 217
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	8, 252
BlsI	GCNGC	2 cut(s)	9, 253
Bme18I	GGWCC	3 cut(s)	239, 642, 728
BmgT120I	GGNCC	4 cut(s)	239, 346, 642, 728
BmiI	GGNNCC	1 cut(s)	21
BmrI	ACTGGG	2 cut(s)	227, 410
BmuI	ACTGGG	2 cut(s)	227, 410
BpiI	GAAGAC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	688
BsaAI	YACGTR	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	233, 405
BseCI	ATCGAT	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	233, 405
BseXI	GCAGC	2 cut(s)	19, 238
BshFI	GGCC	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	688
BsiSI	CCGG	2 cut(s)	155, 731
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	96, 217
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	107, 291
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	233, 405
BssMI	GATC	2 cut(s)	107, 291
Bst4CI	ACNGT	2 cut(s)	117, 699
Bst6I	CTCTTC	3 cut(s)	254, 388, 525
BstBAI	YACGTR	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	195, 371
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	110, 294
BstMAI	GTCTC	2 cut(s)	96, 217
BstMBI	GATC	2 cut(s)	107, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	19, 238
BstV2I	GAAGAC	1 cut(s)	564
Bsu15I	ATCGAT	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	688
BveI	ACCTGC	1 cut(s)	529
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	4 cut(s)	239, 346, 642, 728
ClaI	ATCGAT	1 cut(s)	688
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	7 cut(s)	10, 28, 50, 59, 154, 348, 520
CviKI_1	RGCY	7 cut(s)	10, 28, 50, 59, 154, 348, 520
DdeI	CTNAG	2 cut(s)	195, 371
DpnI	GATC	2 cut(s)	109, 293
DpnII	GATC	2 cut(s)	107, 291
DraI	TTTAAA	2 cut(s)	496, 706
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
Eam1104I	CTCTTC	3 cut(s)	254, 388, 525
EarI	CTCTTC	3 cut(s)	254, 388, 525
Eco47I	GGWCC	3 cut(s)	239, 642, 728
Eco47III	AGCGCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	458
FaeI	CATG	1 cut(s)	230
FaiI	YATR	4 cut(s)	85, 228, 365, 390
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	8, 252
Fsp4HI	GCNGC	2 cut(s)	8, 252
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	2 cut(s)	8, 252
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	2 cut(s)	155, 731
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HpaII	CCGG	2 cut(s)	155, 731
HphI	GGTGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	527, 571, 671
HpyAV	CCTTC	2 cut(s)	258, 467
HpyCH4III	ACNGT	2 cut(s)	117, 699
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	7, 409, 431, 538, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	195, 371
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	2 cut(s)	107, 291
Lsp1109I	GCAGC	2 cut(s)	19, 238
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	2 cut(s)	109, 293
MboI	GATC	2 cut(s)	107, 291
MboII	GAAGA	9 cut(s)	30, 271, 337, 405, 451, 482, 542, 569, 637
MluCI	AATT	8 cut(s)	336, 360, 377, 491, 497, 584, 665, 678
MmeI	TCCRAC	2 cut(s)	217, 600
MnlI	CCTC	4 cut(s)	411, 573, 633, 719
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	4 cut(s)	104, 495, 500, 705
MspI	CCGG	2 cut(s)	155, 731
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	2 cut(s)	107, 291
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	366
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	544
PciI	ACATGT	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	9, 253
Ppu21I	YACGTR	1 cut(s)	248
PscI	ACATGT	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	4 cut(s)	239, 346, 642, 728
PstI	CTGCAG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	104, 495, 500, 705
SatI	GCNGC	2 cut(s)	8, 252
Sau3AI	GATC	2 cut(s)	107, 291
Sau96I	GGNCC	4 cut(s)	239, 346, 642, 728
SfcI	CTRYAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	3 cut(s)	239, 642, 728
SmiI	ATTTAAAT	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	8 cut(s)	336, 360, 377, 491, 497, 584, 665, 678
SsiI	CCGC	1 cut(s)	421
SwaI	ATTTAAAT	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	117, 699
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	4 cut(s)	110, 282, 544, 688
TaqII	GACCGA	2 cut(s)	256, 659
TasI	AATT	8 cut(s)	336, 360, 377, 491, 497, 584, 665, 678
Tru1I	TTAA	4 cut(s)	104, 495, 500, 705
Tru9I	TTAA	4 cut(s)	104, 495, 500, 705
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	7, 251
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	2 cut(s)	72, 89
TspGWI	ACGGA	1 cut(s)	625
VpaK11BI	GGWCC	3 cut(s)	239, 642, 728
XapI	RAATTY	3 cut(s)	336, 491, 665
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.