Protein ROOT PRIMORDIUM DEFECTIVE
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01037 |
| fragaria_vesca | FvH4_3g25450 |
| malus_domestica | MD00G1016400.v1.1 MD09G1291100.v1.1 |
| prunus_persica | Prupe.3G002000_v2.0.a1 |
| pyrus_communis | pycom09g19880 pycom17g28260 |
| rosa_chinensis | RchiOBHm_Chr5g0046651 |
| rosa_laevigata | RLG00000034426 |
| rosa_multiflora | Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00034710 |
| rosa_rugosa | Rorug05G0230100 Rorug05G0230600 Rorug05G0230700 |
| rosa_samantha | Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700 |
| rosa_wichuraiana | Rw5G028970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 184 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AflII | CTTAAG | 1 cut(s) | 125 |
| AgsI | TTSAA | 3 cut(s) | 185, 198, 272 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 1 cut(s) | 163 |
| AluI | AGCT | 1 cut(s) | 163 |
| Alw26I | GTCTC | 2 cut(s) | 229, 242 |
| AlwI | GGATC | 1 cut(s) | 184 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 240 |
| AseI | ATTAAT | 1 cut(s) | 83 |
| BccI | CCATC | 1 cut(s) | 44 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 2 cut(s) | 229, 242 |
| BfrI | CTTAAG | 1 cut(s) | 125 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 202, 234 |
| BpuEI | CTTGAG | 3 cut(s) | 179, 204, 229 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 100 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 100 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsmAI | GTCTC | 2 cut(s) | 229, 242 |
| Bsp143I | GATC | 2 cut(s) | 88, 176 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspPI | GGATC | 1 cut(s) | 184 |
| BspTI | CTTAAG | 1 cut(s) | 125 |
| BssECI | CCNNGG | 1 cut(s) | 100 |
| BssMI | GATC | 2 cut(s) | 88, 176 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| BstAFI | CTTAAG | 1 cut(s) | 125 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstKTI | GATC | 2 cut(s) | 91, 179 |
| BstMAI | GTCTC | 2 cut(s) | 229, 242 |
| BstMBI | GATC | 2 cut(s) | 88, 176 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| BtsI | GCAGTG | 1 cut(s) | 52 |
| BtsIMutI | CAGTG | 1 cut(s) | 52 |
| CaiI | CAGNNNCTG | 1 cut(s) | 240 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviJI | RGCY | 3 cut(s) | 99, 163, 268 |
| CviKI_1 | RGCY | 3 cut(s) | 99, 163, 268 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DpnI | GATC | 2 cut(s) | 90, 178 |
| DpnII | GATC | 2 cut(s) | 88, 176 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaiI | YATR | 3 cut(s) | 111, 143, 283 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 165, 197, 191, 223 |
| FokI | GGATG | 1 cut(s) | 146 |
| HinfI | GANTC | 2 cut(s) | 54, 215 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 1 cut(s) | 208 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| HpyCH4V | TGCA | 1 cut(s) | 45 |
| Kzo9I | GATC | 2 cut(s) | 88, 176 |
| LpnPI | CCDG | 3 cut(s) | 86, 113, 116 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MalI | GATC | 2 cut(s) | 90, 178 |
| MboI | GATC | 2 cut(s) | 88, 176 |
| MnlI | CCTC | 2 cut(s) | 67, 204 |
| MseI | TTAA | 2 cut(s) | 83, 126 |
| MspCI | CTTAAG | 1 cut(s) | 125 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| NdeII | GATC | 2 cut(s) | 88, 176 |
| PfeI | GAWTC | 2 cut(s) | 54, 215 |
| PshBI | ATTAAT | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PstNI | CAGNNNCTG | 1 cut(s) | 240 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| SaqAI | TTAA | 2 cut(s) | 83, 126 |
| Sau3AI | GATC | 2 cut(s) | 88, 176 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SetI | ASST | 2 cut(s) | 78, 165 |
| SmlI | CTYRAG | 4 cut(s) | 125, 158, 208, 219 |
| SmoI | CTYRAG | 4 cut(s) | 125, 158, 208, 219 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 87 |
| TfiI | GAWTC | 2 cut(s) | 54, 215 |
| Tru1I | TTAA | 2 cut(s) | 83, 126 |
| Tru9I | TTAA | 2 cut(s) | 83, 126 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TspDTI | ATGAA | 1 cut(s) | 69 |
| TspRI | CASTG | 1 cut(s) | 52 |
| Vha464I | CTTAAG | 1 cut(s) | 125 |
| VspI | ATTAAT | 1 cut(s) | 83 |