AT4G02170

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016068
Physical Location & Seq
Forward (+)
958045 .. 958834
790 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02170.1

Sequence Viewer

Length: 516 bp
ATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCGATAACACATAAAGCATGGAGTCTCATGAAGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAAATGGCCATTGTTCGAACTACGTAGCTTGTTCTTCAAGCATCTCAAAGCCCTAGCTCATCATCATAGTAACGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAACGTCAAGAAGAAGATGCATTGTCCTACTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGCTCCTCCCGTAGATTTTGACTATGACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGTACAATCGTACGGTTACGATGAATCTTGTTCGGAAGAAGAGAAAGGGGTGGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTGTCTTATTTGAAATACAAACAACACAACGACGCCGTATTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

171

Amino Acids

20.22

Weight (kDa)

8.33

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 135 - 164 9.7e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 360, 368
AgsI TTSAA 4 cut(s) 106, 145, 329, 481
AluBI AGCT 3 cut(s) 135, 164, 208
AluI AGCT 3 cut(s) 135, 164, 208
Alw26I GTCTC 3 cut(s) 18, 65, 457
AoxI GGCC 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BalI TGGCCA 1 cut(s) 115
BccI CCATC 1 cut(s) 64
BceAI ACGGC 2 cut(s) 211, 488
BcoDI GTCTC 3 cut(s) 18, 65, 457
BfaI CTAG 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 2 cut(s) 157, 240
BoxI GACNNNNGTC 1 cut(s) 469
Bpu14I TTCGAA 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 429
BseGI GGATG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 29
BseRI GAGGAG 4 cut(s) 272, 275, 291, 437
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 115
BsiWI CGTACG 1 cut(s) 366
BsmAI GTCTC 3 cut(s) 18, 65, 457
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 429
BssMI GATC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 501
Bst4CI ACNGT 4 cut(s) 182, 188, 338, 371
Bst6I CTCTTC 2 cut(s) 81, 390
BstACI GRCGYC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 15, 435
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 3 cut(s) 18, 65, 457
BstMBI GATC 1 cut(s) 450
BstPAI GACNNNNGTC 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 182
BstSNI TACGTA 1 cut(s) 131
BstUI CGCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 206
CciI TCATGA 1 cut(s) 63
CseI GACGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 359, 367
CviAII CATG 2 cut(s) 54, 64
CviJI RGCY 6 cut(s) 74, 115, 135, 158, 164, 208
CviKI_1 RGCY 6 cut(s) 74, 115, 135, 158, 164, 208
CviQI GTAC 2 cut(s) 359, 367
DdeI CTNAG 2 cut(s) 15, 435
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 81, 390
EarI CTCTTC 2 cut(s) 81, 390
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 57, 67
FaiI YATR 9 cut(s) 48, 55, 65, 82, 174, 272, 321, 444, 514
FatI CATG 2 cut(s) 53, 63
FokI GGATG 1 cut(s) 422
FspBI CTAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 115
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 2 cut(s) 57, 67
HinfI GANTC 3 cut(s) 8, 58, 380
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 18, 29, 352, 391
Hpy188III TCNNGA 3 cut(s) 64, 241, 341
Hpy99I CGWCG 2 cut(s) 356, 503
HpyCH4III ACNGT 4 cut(s) 182, 188, 338, 371
HpyCH4IV ACGT 2 cut(s) 130, 237
HpyCH4V TGCA 2 cut(s) 253, 460
HpyF3I CTNAG 2 cut(s) 15, 435
HpySE526I ACGT 2 cut(s) 130, 237
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 2 cut(s) 57, 67
Kzo9I GATC 1 cut(s) 450
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 2 cut(s) 218, 304
LweI GCATC 2 cut(s) 157, 240
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 130, 237
MaeIII GTNAC 3 cut(s) 176, 182, 371
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 115
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 7 cut(s) 267, 290, 293, 296, 312, 349, 415
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 255
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 115
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 450
NlaIII CATG 2 cut(s) 57, 67
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 255
NspV TTCGAA 1 cut(s) 123
PagI TCATGA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 8, 380
Pfl23II CGTACG 1 cut(s) 366
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 131
PshAI GACNNNNGTC 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 182
PspLI CGTACG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 360, 368
RsaNI GTAC 2 cut(s) 359, 367
RseI CAYNNNNRTG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 450
SchI GAGTC 1 cut(s) 67
SetI ASST 8 cut(s) 97, 133, 137, 166, 210, 240, 278, 360
SfaNI GCATC 2 cut(s) 157, 240
SfuI TTCGAA 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 68
SnaBI TACGTA 1 cut(s) 131
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 4 cut(s) 182, 188, 338, 371
TaiI ACGT 2 cut(s) 133, 240
TaqI TCGA 1 cut(s) 123
TfiI GAWTC 2 cut(s) 8, 380
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 80, 234, 393, 418
TspGWI ACGGA 1 cut(s) 210
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.