Rroxscaffold_3G00218490

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016068
Physical Location & Seq
Forward (+)
781903 .. 782441
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218490.1

Sequence Viewer

Length: 504 bp
ATGCTGGCAAAGAAAATTTGTGATGCTGATCGTGTTGGTCAGAGAGCATGGAAGCTGCTGCGTATGGCCATTATATGGGCAAGAAAGGGCTGCGTCTTCAAACCCCGCCTCATGATGGAACTGAGGGTCGTCCCCAAGTTCCTTAAGACTCACCTTGGCACAAATGCATCAACAAAGTCAAGACCACAAATCCATTACTTTGAACGCGAGTTCTCCTTCGACAAGACCCCGCGCTTCAACATTCCTTGCCTTAACCCCCCACTAGTACTGCACGACGATGACGACCATCTCTTTCATTCTGAACATTATGATGAAGGAAGGAAGAGCTTCCTTACAAATTCTGATCGTGATGATGATGGTGATGATCTTGACCAGGGGATAACATTGTCAGAAGACTATGAGGACGAAGCAGTTGACAGAAAGGCAGATGAGTTCATCGCCAAATTCTATCGGCAAATGAAGCTGCAAAGACAAATTTCATACACACAGTACAATGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

167

Amino Acids

19.81

Weight (kDa)

6.3

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 135 - 167 6.2e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 75
AccII CGCG 2 cut(s) 207, 232
AciI CCGC 2 cut(s) 106, 230
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 4 cut(s) 15, 337, 443, 474
AfaI GTAC 2 cut(s) 267, 491
AfiI CCNNNNNNNGG 2 cut(s) 75, 115
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 3 cut(s) 100, 203, 238
AhlI ACTAGT 1 cut(s) 262
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 55, 327, 463
AluI AGCT 3 cut(s) 55, 327, 463
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 55, 58, 90, 463
ApoI RAATTY 4 cut(s) 15, 337, 443, 474
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 143, 371
BalI TGGCCA 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 88, 399
BbvI GCAGC 4 cut(s) 42, 45, 77, 450
BccI CCATC 3 cut(s) 109, 294, 350
BciT130I CCWGG 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 4 cut(s) 56, 59, 91, 464
BlsI GCNGC 4 cut(s) 57, 60, 92, 465
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 13, 176
BpiI GAAGAC 2 cut(s) 88, 399
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 154, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 115
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 154, 373
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 75, 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 42, 45, 77, 450
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 2 cut(s) 207, 232
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 75, 115
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 28, 343, 364
BspACI CCGC 2 cut(s) 106, 230
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 2 cut(s) 207, 232
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 373
BssMI GATC 3 cut(s) 28, 343, 364
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 317
BstAFI CTTAAG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 2 cut(s) 207, 232
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 31, 346, 367
BstMBI GATC 3 cut(s) 28, 343, 364
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 372
BstUI CGCG 2 cut(s) 207, 232
BstV1I GCAGC 4 cut(s) 42, 45, 77, 450
BstV2I GAAGAC 2 cut(s) 88, 399
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 234
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 266, 490
CviAII CATG 3 cut(s) 48, 112, 499
CviJI RGCY 5 cut(s) 55, 68, 90, 327, 463
CviKI_1 RGCY 5 cut(s) 55, 68, 90, 327, 463
CviQI GTAC 2 cut(s) 266, 490
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 30, 345, 366
DpnII GATC 3 cut(s) 28, 343, 364
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 51, 115, 502
FaiI YATR 9 cut(s) 49, 65, 74, 76, 113, 309, 399, 481, 500
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 47, 111, 498
FauI CCCGC 2 cut(s) 113, 237
Fnu4HI GCNGC 4 cut(s) 56, 59, 91, 464
Fsp4HI GCNGC 4 cut(s) 56, 59, 91, 464
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 233
GluI GCNGC 4 cut(s) 56, 59, 91, 464
HaeIII GGCC 1 cut(s) 68
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 51, 115, 502
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 148
HphI GGTGA 2 cut(s) 143, 371
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 4 cut(s) 42, 301, 343, 391
Hpy188III TCNNGA 4 cut(s) 112, 180, 347, 368
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 226, 308, 312
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 167, 271, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 3 cut(s) 51, 115, 502
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 3 cut(s) 28, 343, 364
LguI GCTCTTC 1 cut(s) 317
LpnPI CCDG 2 cut(s) 359, 386
Lsp1109I GCAGC 4 cut(s) 42, 45, 77, 450
LweI GCATC 2 cut(s) 13, 176
MaeI CTAG 1 cut(s) 263
MalI GATC 3 cut(s) 30, 345, 366
MboI GATC 3 cut(s) 28, 343, 364
MboII GAAGA 3 cut(s) 88, 334, 404
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 4 cut(s) 15, 337, 443, 474
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 3 cut(s) 117, 119, 394
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 68
MseI TTAA 2 cut(s) 144, 252
MslI CAYNNNNRTG 2 cut(s) 276, 309
Msp20I TGGCCA 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 2 cut(s) 207, 232
MwoI GCNNNNNNNGC 1 cut(s) 460
NdeII GATC 3 cut(s) 28, 343, 364
NlaIII CATG 3 cut(s) 51, 115, 502
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 4 cut(s) 57, 60, 92, 465
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
RsaI GTAC 2 cut(s) 267, 491
RsaNI GTAC 2 cut(s) 266, 490
RseI CAYNNNNRTG 2 cut(s) 276, 309
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 144, 252
SatI GCNGC 4 cut(s) 56, 59, 91, 464
Sau3AI GATC 3 cut(s) 28, 343, 364
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 374
SetI ASST 4 cut(s) 57, 156, 329, 465
SfaNI GCATC 2 cut(s) 13, 176
SmiMI CAYNNNNRTG 2 cut(s) 276, 309
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 4 cut(s) 15, 337, 443, 474
SsiI CCGC 2 cut(s) 106, 230
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 15, 337, 443, 474
TatI WGTACW 2 cut(s) 265, 489
Tru1I TTAA 2 cut(s) 144, 252
Tru9I TTAA 2 cut(s) 144, 252
TseI GCWGC 4 cut(s) 55, 58, 90, 463
TspDTI ATGAA 5 cut(s) 284, 327, 424, 468, 473
Van91I CCANNNNNTGG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 4 cut(s) 15, 337, 443, 474
XceI RCATGY 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.