RLG00000000530

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016068
Physical Location & Seq
Forward (+)
1700531 .. 1701100
570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000530

Sequence Viewer

Length: 570 bp
ATGCTGGCAAAGAAAATTTGTGATGCTGATCGTGTTGGTCAGAGAGCGTGGAAGCTGCTGCGTATGGCCATTATATGGGCAAGAAAGGGCTGCGTCTTCAAACCCCGCCTCATGATGGAACTGAGGGTCGTCCCCAAGTTCCTTAAGACTCACCTCGGCACAAATGCATCAACAAAGTCAAGACCACAAATCCATTACTTTGAACGCGAGTTCTCCTTCGACAAGACCCCCCTTTTCAATCTCAAAATGCACCGTCCACCCTCCATGCGCTTCAACATTCCTTGCCTTAACCCCCCACTAGTACTGCACGACGATGACGACCATTTCTTTCATTCTGATCATTATGATGAAGGAAGGAAGAGCTTCCCTACAAATTCTGATCGTGATGATGATGGTGATGATCTTGACCAGGGGACAACATTGTCAGAAGACTATGGTACAGCTGCTTATTCATGTGATAATGATGAGGACGAAGCAGTTGACAGAAAGGCAGATGAGTTCATCGCCAAATTCTATCGGCAAATGAAGCTGCAAAGACAAATTTCATACACACAGTACAATGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

190

Amino Acids

22.25

Weight (kDa)

6.38

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 157 - 189 7.6e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 75
AccII CGCG 1 cut(s) 207
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 4 cut(s) 15, 373, 509, 540
AfaI GTAC 3 cut(s) 303, 439, 557
AfiI CCNNNNNNNGG 2 cut(s) 75, 115
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 4 cut(s) 100, 203, 238, 274
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 4 cut(s) 55, 363, 443, 529
AluI AGCT 4 cut(s) 55, 363, 443, 529
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 5 cut(s) 55, 58, 90, 443, 529
ApoI RAATTY 4 cut(s) 15, 373, 509, 540
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 143, 407
BalI TGGCCA 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 88, 435
BbvI GCAGC 5 cut(s) 42, 45, 77, 430, 516
BccI CCATC 2 cut(s) 109, 386
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 337
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 5 cut(s) 56, 59, 91, 444, 530
BlsI GCNGC 5 cut(s) 57, 60, 92, 445, 531
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 13, 176
BpiI GAAGAC 2 cut(s) 88, 435
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 154, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 115
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 154, 409
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 75, 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 5 cut(s) 42, 45, 77, 430, 516
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 2 cut(s) 116, 427
BslI CCNNNNNNNGG 2 cut(s) 75, 115
BsmFI GGGAC 2 cut(s) 116, 427
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 4 cut(s) 28, 337, 379, 400
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 353
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 409
BssMI GATC 4 cut(s) 28, 337, 379, 400
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 254, 555
Bst6I CTCTTC 1 cut(s) 353
BstAFI CTTAAG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 4 cut(s) 31, 340, 382, 403
BstMBI GATC 4 cut(s) 28, 337, 379, 400
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 42, 45, 77, 430, 516
BstV2I GAAGAC 2 cut(s) 88, 435
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 270
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 302, 438, 556
CviAII CATG 4 cut(s) 112, 265, 453, 565
CviJI RGCY 6 cut(s) 55, 68, 90, 363, 443, 529
CviKI_1 RGCY 6 cut(s) 55, 68, 90, 363, 443, 529
CviQI GTAC 3 cut(s) 302, 438, 556
DdeI CTNAG 1 cut(s) 122
DpnI GATC 4 cut(s) 30, 339, 381, 402
DpnII GATC 4 cut(s) 28, 337, 379, 400
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 4 cut(s) 115, 268, 456, 568
FaqI GGGAC 2 cut(s) 116, 427
FatI CATG 4 cut(s) 111, 264, 452, 564
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 5 cut(s) 56, 59, 91, 444, 530
Fsp4HI GCNGC 5 cut(s) 56, 59, 91, 444, 530
FspBI CTAG 1 cut(s) 299
GlaI GCGC 1 cut(s) 269
GluI GCNGC 5 cut(s) 56, 59, 91, 444, 530
HaeIII GGCC 1 cut(s) 68
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 115, 268, 456, 568
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 1 cut(s) 148
HphI GGTGA 2 cut(s) 143, 407
Hpy166II GTNNAC 2 cut(s) 257, 481
Hpy188I TCNGA 4 cut(s) 42, 337, 379, 427
Hpy188III TCNNGA 4 cut(s) 112, 180, 383, 404
Hpy8I GTNNAC 2 cut(s) 257, 481
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 226, 344, 348
HpyCH4III ACNGT 2 cut(s) 254, 555
HpyCH4V TGCA 4 cut(s) 167, 250, 307, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 4 cut(s) 115, 268, 456, 568
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 28, 337, 379, 400
LguI GCTCTTC 1 cut(s) 353
LpnPI CCDG 2 cut(s) 395, 422
Lsp1109I GCAGC 5 cut(s) 42, 45, 77, 430, 516
LweI GCATC 2 cut(s) 13, 176
MaeI CTAG 1 cut(s) 299
MalI GATC 4 cut(s) 30, 339, 381, 402
MboI GATC 4 cut(s) 28, 337, 379, 400
MboII GAAGA 3 cut(s) 88, 370, 440
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 4 cut(s) 15, 373, 509, 540
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 5 cut(s) 117, 119, 164, 271, 460
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 68
MseI TTAA 2 cut(s) 144, 288
MslI CAYNNNNRTG 2 cut(s) 312, 345
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 443
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 526
NdeII GATC 4 cut(s) 28, 337, 379, 400
NlaIII CATG 4 cut(s) 115, 268, 456, 568
NmeAIII GCCGAG 1 cut(s) 135
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 568
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 5 cut(s) 57, 60, 92, 445, 531
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 303, 439, 557
RsaNI GTAC 3 cut(s) 302, 438, 556
RseI CAYNNNNRTG 2 cut(s) 312, 345
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 144, 288
SatI GCNGC 5 cut(s) 56, 59, 91, 444, 530
Sau3AI GATC 4 cut(s) 28, 337, 379, 400
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 410
SetI ASST 5 cut(s) 57, 156, 365, 445, 531
SfaNI GCATC 2 cut(s) 13, 176
SmiMI CAYNNNNRTG 2 cut(s) 312, 345
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 4 cut(s) 15, 373, 509, 540
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 254, 555
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 15, 373, 509, 540
TatI WGTACW 2 cut(s) 301, 555
Tru1I TTAA 2 cut(s) 144, 288
Tru9I TTAA 2 cut(s) 144, 288
TseI GCWGC 5 cut(s) 55, 58, 90, 443, 529
TspDTI ATGAA 6 cut(s) 320, 363, 441, 490, 534, 539
Van91I CCANNNNNTGG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 4 cut(s) 15, 373, 509, 540
XceI RCATGY 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.